Wall clock time and date at job start Wed Apr 1 2020 05:29:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52990 * 1
3 3 O 1.45202 * 109.47483 * 2 1
4 4 C 1.34225 * 117.00084 * 180.02562 * 3 2 1
5 5 O 1.20827 * 120.00174 * 0.02562 * 4 3 2
6 6 C 1.50704 * 119.99822 * 179.97438 * 4 3 2
7 7 H 1.09005 * 109.46638 * 60.00596 * 6 4 3
8 8 C 1.52995 * 109.47631 * 300.00458 * 6 4 3
9 9 C 1.52994 * 109.47363 * 174.99626 * 8 6 4
10 10 C 1.50705 * 109.47184 * 179.97438 * 9 8 6
11 11 C 1.38236 * 119.99903 * 269.72851 * 10 9 8
12 12 C 1.38235 * 119.99829 * 179.76956 * 11 10 9
13 13 C 1.38237 * 119.99769 * 0.50335 * 12 11 10
14 14 C 1.38235 * 119.99963 * 359.74905 * 13 12 11
15 15 C 1.38227 * 120.00020 * 0.02562 * 14 13 12
16 16 N 1.46897 * 109.46857 * 179.97438 * 6 4 3
17 17 C 1.47844 * 111.00019 * 55.85292 * 16 6 4
18 18 C 1.54902 * 104.79712 * 213.63303 * 17 16 6
19 19 C 1.55145 * 101.65321 * 37.06652 * 18 17 16
20 20 O 1.42896 * 110.85793 * 82.80012 * 19 18 17
21 21 C 1.50702 * 110.70519 * 205.96650 * 19 18 17
22 22 H 1.07998 * 119.99943 * 116.10964 * 21 19 18
23 23 C 1.37877 * 120.00006 * 296.10651 * 21 19 18
24 24 N 1.31509 * 120.00119 * 5.74182 * 23 21 19
25 25 Si 1.86802 * 119.99803 * 185.74306 * 23 21 19
26 26 H 1.48501 * 109.47171 * 84.99573 * 25 23 21
27 27 H 1.48499 * 109.46930 * 204.99265 * 25 23 21
28 28 H 1.48496 * 109.47184 * 324.99350 * 25 23 21
29 29 C 1.47443 * 111.00446 * 295.00382 * 16 6 4
30 30 H 1.08997 * 109.47299 * 180.02562 * 1 2 3
31 31 H 1.09005 * 109.47485 * 300.00172 * 1 2 3
32 32 H 1.08999 * 109.47348 * 60.00297 * 1 2 3
33 33 H 1.09005 * 109.47485 * 239.99828 * 2 1 3
34 34 H 1.09006 * 109.47389 * 120.00387 * 2 1 3
35 35 H 1.09008 * 109.47058 * 54.99357 * 8 6 4
36 36 H 1.08999 * 109.46920 * 295.00303 * 8 6 4
37 37 H 1.09007 * 109.46872 * 60.00230 * 9 8 6
38 38 H 1.08999 * 109.47655 * 300.00227 * 9 8 6
39 39 H 1.08002 * 119.99764 * 359.97438 * 11 10 9
40 40 H 1.07991 * 119.99921 * 180.23184 * 12 11 10
41 41 H 1.07999 * 119.99914 * 179.72902 * 13 12 11
42 42 H 1.08006 * 119.99467 * 179.97438 * 14 13 12
43 43 H 1.08012 * 120.00076 * 179.97438 * 15 14 13
44 44 H 1.09004 * 110.37001 * 332.45892 * 17 16 6
45 45 H 1.08998 * 110.37615 * 94.79844 * 17 16 6
46 46 H 1.09004 * 110.98935 * 278.97678 * 18 17 16
47 47 H 1.08996 * 111.02806 * 155.17420 * 18 17 16
48 48 H 0.96706 * 113.99533 * 60.69753 * 20 19 18
49 49 H 0.96994 * 120.00224 * 179.97438 * 24 23 21
50 50 H 1.08998 * 109.88970 * 242.66179 * 29 16 6
51 51 H 1.08996 * 109.88691 * 3.69022 * 29 16 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 8 2.0140 1.3689 0.0000
4 6 3.3447 1.5447 -0.0005
5 8 4.0807 0.5865 -0.0015
6 6 3.9207 2.9374 -0.0012
7 1 3.5851 3.4697 0.8889
8 6 3.4487 3.6841 -1.2503
9 6 3.9301 5.1350 -1.1895
10 6 3.4656 5.8704 -2.4203
11 6 4.2633 5.9016 -3.5489
12 6 3.8351 6.5721 -4.6794
13 6 2.6140 7.2201 -4.6778
14 6 1.8188 7.1932 -3.5474
15 6 2.2449 6.5188 -2.4185
16 7 5.3877 2.8604 -0.0010
17 6 5.8762 2.0584 -1.1429
18 6 7.1466 1.3481 -0.6128
19 6 6.7405 1.0307 0.8506
20 8 5.9679 -0.1697 0.9152
21 6 7.9592 0.9257 1.7309
22 1 8.1065 1.6310 2.5354
23 6 8.8860 -0.0707 1.5092
24 7 8.7667 -0.8589 0.4633
25 14 10.3111 -0.3012 2.6947
26 1 9.8772 -1.1536 3.8307
27 1 11.4416 -0.9557 1.9884
28 1 10.7475 1.0223 3.2075
29 6 5.8849 2.2523 1.2467
30 1 -0.3634 -1.0276 0.0005
31 1 -0.3634 0.5139 0.8900
32 1 -0.3634 0.5138 -0.8900
33 1 1.8933 -0.5139 -0.8900
34 1 1.8933 -0.5139 0.8900
35 1 2.3598 3.6641 -1.2958
36 1 3.8583 3.2022 -2.1381
37 1 5.0190 5.1550 -1.1441
38 1 3.5205 5.6169 -0.3017
39 1 5.2194 5.3994 -3.5485
40 1 4.4566 6.5934 -5.5624
41 1 2.2815 7.7476 -5.5596
42 1 0.8650 7.6998 -3.5461
43 1 1.6237 6.4981 -1.5351
44 1 5.1269 1.3244 -1.4393
45 1 6.1264 2.7068 -1.9826
46 1 8.0082 2.0151 -0.6429
47 1 7.3444 0.4327 -1.1704
48 1 6.4329 -0.9544 0.5940
49 1 9.4189 -1.5596 0.3071
50 1 6.4957 2.9716 1.7921
51 1 5.0451 1.9351 1.8649
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000930819242.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:29:01
Heat of formation + Delta-G solvation = -101.730280 kcal
Electronic energy + Delta-G solvation = -32060.690125 eV
Core-core repulsion = 27925.139238 eV
Total energy + Delta-G solvation = -4135.550887 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.193 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-40.55972 -39.29689 -38.21159 -35.93692 -35.37429 -33.53790 -31.96272 -31.75133
-30.93159 -30.89326 -28.65782 -27.90522 -26.30822 -24.32169 -23.40072 -22.60920
-22.39994 -21.09662 -20.71233 -19.54427 -19.32187 -17.33689 -16.89387 -16.74274
-16.23081 -16.00525 -15.50643 -15.18406 -14.88847 -14.74832 -14.50288 -14.10144
-13.77341 -13.52299 -13.41342 -13.27353 -13.10526 -12.88381 -12.73376 -12.44986
-12.21080 -11.96867 -11.74034 -11.65888 -11.44432 -11.40031 -11.27962 -11.10948
-11.06985 -10.87552 -10.73593 -10.59115 -10.48202 -10.36388 -10.17720 -10.06550
-9.91204 -9.68314 -9.10304 -8.97321 -8.71587 -8.50410 -7.84289 -7.69128
-6.09621 -4.16744 1.31174 1.34977 2.76960 3.05180 3.28177 3.34559
3.37433 3.74240 4.36732 4.46825 4.69054 4.81521 4.91958 4.99800
5.02079 5.06146 5.11087 5.17058 5.20179 5.31543 5.38958 5.42107
5.47573 5.55565 5.63887 5.77021 5.81923 5.83227 5.87385 5.94217
5.97190 6.02478 6.09265 6.21616 6.26259 6.34332 6.41821 6.45002
6.45714 6.47928 6.62412 6.69261 6.91394 6.97321 7.01219 7.17953
7.46529 7.60743 7.64784 7.68528 7.93761 8.28704 8.36526 8.83777
9.51396 9.71717 10.96129
Molecular weight = 347.19amu
Principal moments of inertia in cm(-1)
A = 0.010493 B = 0.003276 C = 0.002658
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2667.893136 B = 8543.697530 C =10530.355213
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.062 3.938
3 O -0.372 6.372
4 C 0.398 3.602
5 O -0.429 6.429
6 C 0.092 3.908
7 H 0.108 0.892
8 C -0.095 4.095
9 C -0.074 4.074
10 C -0.074 4.074
11 C -0.115 4.115
12 C -0.120 4.120
13 C -0.131 4.131
14 C -0.122 4.122
15 C -0.119 4.119
16 N -0.497 5.497
17 C 0.030 3.970
18 C -0.122 4.122
19 C 0.247 3.753
20 O -0.559 6.559
21 C -0.533 4.533
22 H 0.058 0.942
23 C 0.071 3.929
24 N -0.894 5.894
25 Si 0.895 3.105
26 H -0.280 1.280
27 H -0.287 1.287
28 H -0.274 1.274
29 C 0.058 3.942
30 H 0.074 0.926
31 H 0.063 0.937
32 H 0.062 0.938
33 H 0.064 0.936
34 H 0.067 0.933
35 H 0.073 0.927
36 H 0.068 0.932
37 H 0.090 0.910
38 H 0.071 0.929
39 H 0.124 0.876
40 H 0.119 0.881
41 H 0.117 0.883
42 H 0.118 0.882
43 H 0.121 0.879
44 H 0.058 0.942
45 H 0.055 0.945
46 H 0.057 0.943
47 H 0.073 0.927
48 H 0.368 0.632
49 H 0.264 0.736
50 H 0.079 0.921
51 H 0.043 0.957
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.250 10.970 -7.480 20.220
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.012 4.012
3 O -0.290 6.290
4 C 0.236 3.764
5 O -0.310 6.310
6 C -0.019 4.019
7 H 0.126 0.874
8 C -0.133 4.133
9 C -0.111 4.111
10 C -0.074 4.074
11 C -0.133 4.133
12 C -0.138 4.138
13 C -0.149 4.149
14 C -0.140 4.140
15 C -0.137 4.137
16 N -0.220 5.220
17 C -0.097 4.097
18 C -0.160 4.160
19 C 0.206 3.794
20 O -0.366 6.366
21 C -0.572 4.572
22 H 0.076 0.924
23 C -0.131 4.131
24 N -0.533 5.533
25 Si 0.723 3.277
26 H -0.206 1.206
27 H -0.213 1.213
28 H -0.199 1.199
29 C -0.069 4.069
30 H 0.093 0.907
31 H 0.082 0.918
32 H 0.081 0.919
33 H 0.082 0.918
34 H 0.085 0.915
35 H 0.092 0.908
36 H 0.087 0.913
37 H 0.109 0.891
38 H 0.090 0.910
39 H 0.142 0.858
40 H 0.137 0.863
41 H 0.135 0.865
42 H 0.136 0.864
43 H 0.139 0.861
44 H 0.076 0.924
45 H 0.073 0.927
46 H 0.076 0.924
47 H 0.092 0.908
48 H 0.215 0.785
49 H 0.074 0.926
50 H 0.097 0.903
51 H 0.061 0.939
Dipole moment (debyes) X Y Z Total
from point charges -15.199 11.409 -7.360 20.380
hybrid contribution 0.970 -1.580 0.427 1.902
sum -14.229 9.829 -6.933 18.632
Atomic orbital electron populations
1.21772 0.93366 1.02457 1.03025 1.22848 0.94584 0.81393 1.02411
1.86505 1.26038 1.31470 1.85032 1.25466 0.80693 0.94933 0.75349
1.91052 1.58315 1.41750 1.39866 1.21912 0.90137 0.88842 1.01041
0.87408 1.21490 1.00733 0.94730 0.96360 1.20555 1.02943 0.93374
0.94276 1.20049 0.94286 0.97128 0.95908 1.21165 1.00019 0.99281
0.92849 1.21154 0.96465 0.97952 0.98244 1.21101 0.95122 1.00451
0.98271 1.21113 0.99631 0.99723 0.93526 1.21091 0.96109 0.98107
0.98427 1.64188 1.03029 1.49796 1.04999 1.23289 0.99102 0.94804
0.92477 1.23072 0.93932 0.99343 0.99697 1.19468 0.87145 0.82345
0.90454 1.86303 1.44002 1.18262 1.88003 1.21643 1.05806 1.14118
1.15632 0.92376 1.24970 0.97602 0.95608 0.94894 1.69778 1.37040
1.19981 1.26519 0.86566 0.81599 0.78357 0.81153 1.20603 1.21316
1.19932 1.22846 0.98170 0.96012 0.89832 0.90747 0.91784 0.91855
0.91806 0.91473 0.90810 0.91292 0.89101 0.90992 0.85827 0.86312
0.86534 0.86423 0.86129 0.92418 0.92658 0.92430 0.90817 0.78455
0.92642 0.90270 0.93863
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.47 10.29 37.15 0.38 -1.08 16
2 C 0.06 0.85 6.19 37.15 0.23 1.08 16
3 O -0.37 -5.79 10.03 -39.24 -0.39 -6.19 16
4 C 0.40 7.07 6.01 36.01 0.22 7.28 16
5 O -0.43 -9.20 9.08 -26.88 -0.24 -9.45 16
6 C 0.09 1.44 2.09 -68.87 -0.14 1.29 16
7 H 0.11 1.53 8.13 -51.93 -0.42 1.11 16
8 C -0.10 -1.22 4.56 -26.74 -0.12 -1.34 16
9 C -0.07 -0.86 5.23 -27.88 -0.15 -1.00 16
10 C -0.07 -0.83 5.13 -104.62 -0.54 -1.37 16
11 C -0.12 -1.29 9.70 -39.58 -0.38 -1.68 16
12 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16
13 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16
14 C -0.12 -1.15 10.05 -39.59 -0.40 -1.55 16
15 C -0.12 -1.22 9.70 -39.59 -0.38 -1.61 16
16 N -0.50 -9.11 4.62 -224.69 -1.04 -10.15 16
17 C 0.03 0.59 4.86 -2.30 -0.01 0.58 16
18 C -0.12 -2.87 5.48 -24.59 -0.13 -3.01 16
19 C 0.25 6.18 0.76 -89.95 -0.07 6.12 16
20 O -0.56 -14.90 9.72 -59.80 -0.58 -15.48 16
21 C -0.53 -14.55 8.20 -34.44 -0.28 -14.83 16
22 H 0.06 1.58 7.56 -52.49 -0.40 1.18 16
23 C 0.07 1.93 5.28 -17.82 -0.09 1.83 16
24 N -0.89 -24.49 10.71 55.43 0.59 -23.90 16
25 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16
26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
27 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16
28 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16
29 C 0.06 1.27 5.51 -2.84 -0.02 1.25 16
30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16
33 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16
34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16
35 H 0.07 0.88 8.00 -51.92 -0.42 0.47 16
36 H 0.07 0.96 7.14 -51.93 -0.37 0.59 16
37 H 0.09 1.17 7.69 -51.92 -0.40 0.77 16
38 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16
39 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16
40 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16
41 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16
42 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16
43 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16
44 H 0.06 1.21 5.26 -51.93 -0.27 0.94 16
45 H 0.06 0.99 8.10 -51.93 -0.42 0.57 16
46 H 0.06 1.40 8.04 -51.93 -0.42 0.99 16
47 H 0.07 1.89 7.52 -51.93 -0.39 1.50 16
48 H 0.37 10.21 7.52 45.56 0.34 10.55 16
49 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16
50 H 0.08 1.71 7.64 -51.93 -0.40 1.31 16
51 H 0.04 0.96 6.86 -51.93 -0.36 0.60 16
LS Contribution 401.00 15.07 6.04 6.04
Total: -1.00 -29.81 401.00 -11.03 -40.84
By element:
Atomic # 1 Polarization: 21.14 SS G_CDS: -7.70 Total: 13.44 kcal
Atomic # 6 Polarization: -8.60 SS G_CDS: -2.69 Total: -11.29 kcal
Atomic # 7 Polarization: -33.60 SS G_CDS: -0.44 Total: -34.05 kcal
Atomic # 8 Polarization: -29.90 SS G_CDS: -1.22 Total: -31.12 kcal
Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal
Total LS contribution 6.04 Total: 6.04 kcal
Total: -29.81 -11.03 -40.84 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000930819242.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -60.892 kcal
(2) G-P(sol) polarization free energy of solvation -29.809 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.701 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.029 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.838 kcal
(6) G-S(sol) free energy of system = (1) + (5) -101.730 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds