Wall clock time and date at job start Wed Apr 1 2020 05:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 O 1.45202 * 109.47483 * 2 1 4 4 C 1.34225 * 117.00084 * 180.02562 * 3 2 1 5 5 O 1.20827 * 120.00174 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99822 * 179.97438 * 4 3 2 7 7 H 1.09005 * 109.46638 * 60.00596 * 6 4 3 8 8 C 1.52995 * 109.47631 * 300.00458 * 6 4 3 9 9 C 1.52994 * 109.47363 * 174.99626 * 8 6 4 10 10 C 1.50705 * 109.47184 * 179.97438 * 9 8 6 11 11 C 1.38236 * 119.99903 * 269.72851 * 10 9 8 12 12 C 1.38235 * 119.99829 * 179.76956 * 11 10 9 13 13 C 1.38237 * 119.99769 * 0.50335 * 12 11 10 14 14 C 1.38235 * 119.99963 * 359.74905 * 13 12 11 15 15 C 1.38227 * 120.00020 * 0.02562 * 14 13 12 16 16 N 1.46897 * 109.46857 * 179.97438 * 6 4 3 17 17 C 1.47844 * 111.00019 * 55.85292 * 16 6 4 18 18 C 1.54902 * 104.79712 * 213.63303 * 17 16 6 19 19 C 1.55145 * 101.65321 * 37.06652 * 18 17 16 20 20 O 1.42896 * 110.85793 * 82.80012 * 19 18 17 21 21 C 1.50702 * 110.70519 * 205.96650 * 19 18 17 22 22 H 1.07998 * 119.99943 * 116.10964 * 21 19 18 23 23 C 1.37877 * 120.00006 * 296.10651 * 21 19 18 24 24 N 1.31509 * 120.00119 * 5.74182 * 23 21 19 25 25 Si 1.86802 * 119.99803 * 185.74306 * 23 21 19 26 26 H 1.48501 * 109.47171 * 84.99573 * 25 23 21 27 27 H 1.48499 * 109.46930 * 204.99265 * 25 23 21 28 28 H 1.48496 * 109.47184 * 324.99350 * 25 23 21 29 29 C 1.47443 * 111.00446 * 295.00382 * 16 6 4 30 30 H 1.08997 * 109.47299 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47485 * 300.00172 * 1 2 3 32 32 H 1.08999 * 109.47348 * 60.00297 * 1 2 3 33 33 H 1.09005 * 109.47485 * 239.99828 * 2 1 3 34 34 H 1.09006 * 109.47389 * 120.00387 * 2 1 3 35 35 H 1.09008 * 109.47058 * 54.99357 * 8 6 4 36 36 H 1.08999 * 109.46920 * 295.00303 * 8 6 4 37 37 H 1.09007 * 109.46872 * 60.00230 * 9 8 6 38 38 H 1.08999 * 109.47655 * 300.00227 * 9 8 6 39 39 H 1.08002 * 119.99764 * 359.97438 * 11 10 9 40 40 H 1.07991 * 119.99921 * 180.23184 * 12 11 10 41 41 H 1.07999 * 119.99914 * 179.72902 * 13 12 11 42 42 H 1.08006 * 119.99467 * 179.97438 * 14 13 12 43 43 H 1.08012 * 120.00076 * 179.97438 * 15 14 13 44 44 H 1.09004 * 110.37001 * 332.45892 * 17 16 6 45 45 H 1.08998 * 110.37615 * 94.79844 * 17 16 6 46 46 H 1.09004 * 110.98935 * 278.97678 * 18 17 16 47 47 H 1.08996 * 111.02806 * 155.17420 * 18 17 16 48 48 H 0.96706 * 113.99533 * 60.69753 * 20 19 18 49 49 H 0.96994 * 120.00224 * 179.97438 * 24 23 21 50 50 H 1.08998 * 109.88970 * 242.66179 * 29 16 6 51 51 H 1.08996 * 109.88691 * 3.69022 * 29 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0807 0.5865 -0.0015 6 6 3.9207 2.9374 -0.0012 7 1 3.5851 3.4697 0.8889 8 6 3.4487 3.6841 -1.2503 9 6 3.9301 5.1350 -1.1895 10 6 3.4656 5.8704 -2.4203 11 6 4.2633 5.9016 -3.5489 12 6 3.8351 6.5721 -4.6794 13 6 2.6140 7.2201 -4.6778 14 6 1.8188 7.1932 -3.5474 15 6 2.2449 6.5188 -2.4185 16 7 5.3877 2.8604 -0.0010 17 6 5.8762 2.0584 -1.1429 18 6 7.1466 1.3481 -0.6128 19 6 6.7405 1.0307 0.8506 20 8 5.9679 -0.1697 0.9152 21 6 7.9592 0.9257 1.7309 22 1 8.1065 1.6310 2.5354 23 6 8.8860 -0.0707 1.5092 24 7 8.7667 -0.8589 0.4633 25 14 10.3111 -0.3012 2.6947 26 1 9.8772 -1.1536 3.8307 27 1 11.4416 -0.9557 1.9884 28 1 10.7475 1.0223 3.2075 29 6 5.8849 2.2523 1.2467 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.3598 3.6641 -1.2958 36 1 3.8583 3.2022 -2.1381 37 1 5.0190 5.1550 -1.1441 38 1 3.5205 5.6169 -0.3017 39 1 5.2194 5.3994 -3.5485 40 1 4.4566 6.5934 -5.5624 41 1 2.2815 7.7476 -5.5596 42 1 0.8650 7.6998 -3.5461 43 1 1.6237 6.4981 -1.5351 44 1 5.1269 1.3244 -1.4393 45 1 6.1264 2.7068 -1.9826 46 1 8.0082 2.0151 -0.6429 47 1 7.3444 0.4327 -1.1704 48 1 6.4329 -0.9544 0.5940 49 1 9.4189 -1.5596 0.3071 50 1 6.4957 2.9716 1.7921 51 1 5.0451 1.9351 1.8649 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930819242.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:01 Heat of formation + Delta-G solvation = -101.730280 kcal Electronic energy + Delta-G solvation = -32060.690125 eV Core-core repulsion = 27925.139238 eV Total energy + Delta-G solvation = -4135.550887 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.55972 -39.29689 -38.21159 -35.93692 -35.37429 -33.53790 -31.96272 -31.75133 -30.93159 -30.89326 -28.65782 -27.90522 -26.30822 -24.32169 -23.40072 -22.60920 -22.39994 -21.09662 -20.71233 -19.54427 -19.32187 -17.33689 -16.89387 -16.74274 -16.23081 -16.00525 -15.50643 -15.18406 -14.88847 -14.74832 -14.50288 -14.10144 -13.77341 -13.52299 -13.41342 -13.27353 -13.10526 -12.88381 -12.73376 -12.44986 -12.21080 -11.96867 -11.74034 -11.65888 -11.44432 -11.40031 -11.27962 -11.10948 -11.06985 -10.87552 -10.73593 -10.59115 -10.48202 -10.36388 -10.17720 -10.06550 -9.91204 -9.68314 -9.10304 -8.97321 -8.71587 -8.50410 -7.84289 -7.69128 -6.09621 -4.16744 1.31174 1.34977 2.76960 3.05180 3.28177 3.34559 3.37433 3.74240 4.36732 4.46825 4.69054 4.81521 4.91958 4.99800 5.02079 5.06146 5.11087 5.17058 5.20179 5.31543 5.38958 5.42107 5.47573 5.55565 5.63887 5.77021 5.81923 5.83227 5.87385 5.94217 5.97190 6.02478 6.09265 6.21616 6.26259 6.34332 6.41821 6.45002 6.45714 6.47928 6.62412 6.69261 6.91394 6.97321 7.01219 7.17953 7.46529 7.60743 7.64784 7.68528 7.93761 8.28704 8.36526 8.83777 9.51396 9.71717 10.96129 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.010493 B = 0.003276 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.893136 B = 8543.697530 C =10530.355213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.062 3.938 3 O -0.372 6.372 4 C 0.398 3.602 5 O -0.429 6.429 6 C 0.092 3.908 7 H 0.108 0.892 8 C -0.095 4.095 9 C -0.074 4.074 10 C -0.074 4.074 11 C -0.115 4.115 12 C -0.120 4.120 13 C -0.131 4.131 14 C -0.122 4.122 15 C -0.119 4.119 16 N -0.497 5.497 17 C 0.030 3.970 18 C -0.122 4.122 19 C 0.247 3.753 20 O -0.559 6.559 21 C -0.533 4.533 22 H 0.058 0.942 23 C 0.071 3.929 24 N -0.894 5.894 25 Si 0.895 3.105 26 H -0.280 1.280 27 H -0.287 1.287 28 H -0.274 1.274 29 C 0.058 3.942 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.071 0.929 39 H 0.124 0.876 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.057 0.943 47 H 0.073 0.927 48 H 0.368 0.632 49 H 0.264 0.736 50 H 0.079 0.921 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.250 10.970 -7.480 20.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.012 4.012 3 O -0.290 6.290 4 C 0.236 3.764 5 O -0.310 6.310 6 C -0.019 4.019 7 H 0.126 0.874 8 C -0.133 4.133 9 C -0.111 4.111 10 C -0.074 4.074 11 C -0.133 4.133 12 C -0.138 4.138 13 C -0.149 4.149 14 C -0.140 4.140 15 C -0.137 4.137 16 N -0.220 5.220 17 C -0.097 4.097 18 C -0.160 4.160 19 C 0.206 3.794 20 O -0.366 6.366 21 C -0.572 4.572 22 H 0.076 0.924 23 C -0.131 4.131 24 N -0.533 5.533 25 Si 0.723 3.277 26 H -0.206 1.206 27 H -0.213 1.213 28 H -0.199 1.199 29 C -0.069 4.069 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.090 0.910 39 H 0.142 0.858 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.092 0.908 48 H 0.215 0.785 49 H 0.074 0.926 50 H 0.097 0.903 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -15.199 11.409 -7.360 20.380 hybrid contribution 0.970 -1.580 0.427 1.902 sum -14.229 9.829 -6.933 18.632 Atomic orbital electron populations 1.21772 0.93366 1.02457 1.03025 1.22848 0.94584 0.81393 1.02411 1.86505 1.26038 1.31470 1.85032 1.25466 0.80693 0.94933 0.75349 1.91052 1.58315 1.41750 1.39866 1.21912 0.90137 0.88842 1.01041 0.87408 1.21490 1.00733 0.94730 0.96360 1.20555 1.02943 0.93374 0.94276 1.20049 0.94286 0.97128 0.95908 1.21165 1.00019 0.99281 0.92849 1.21154 0.96465 0.97952 0.98244 1.21101 0.95122 1.00451 0.98271 1.21113 0.99631 0.99723 0.93526 1.21091 0.96109 0.98107 0.98427 1.64188 1.03029 1.49796 1.04999 1.23289 0.99102 0.94804 0.92477 1.23072 0.93932 0.99343 0.99697 1.19468 0.87145 0.82345 0.90454 1.86303 1.44002 1.18262 1.88003 1.21643 1.05806 1.14118 1.15632 0.92376 1.24970 0.97602 0.95608 0.94894 1.69778 1.37040 1.19981 1.26519 0.86566 0.81599 0.78357 0.81153 1.20603 1.21316 1.19932 1.22846 0.98170 0.96012 0.89832 0.90747 0.91784 0.91855 0.91806 0.91473 0.90810 0.91292 0.89101 0.90992 0.85827 0.86312 0.86534 0.86423 0.86129 0.92418 0.92658 0.92430 0.90817 0.78455 0.92642 0.90270 0.93863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 10.29 37.15 0.38 -1.08 16 2 C 0.06 0.85 6.19 37.15 0.23 1.08 16 3 O -0.37 -5.79 10.03 -39.24 -0.39 -6.19 16 4 C 0.40 7.07 6.01 36.01 0.22 7.28 16 5 O -0.43 -9.20 9.08 -26.88 -0.24 -9.45 16 6 C 0.09 1.44 2.09 -68.87 -0.14 1.29 16 7 H 0.11 1.53 8.13 -51.93 -0.42 1.11 16 8 C -0.10 -1.22 4.56 -26.74 -0.12 -1.34 16 9 C -0.07 -0.86 5.23 -27.88 -0.15 -1.00 16 10 C -0.07 -0.83 5.13 -104.62 -0.54 -1.37 16 11 C -0.12 -1.29 9.70 -39.58 -0.38 -1.68 16 12 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 13 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 14 C -0.12 -1.15 10.05 -39.59 -0.40 -1.55 16 15 C -0.12 -1.22 9.70 -39.59 -0.38 -1.61 16 16 N -0.50 -9.11 4.62 -224.69 -1.04 -10.15 16 17 C 0.03 0.59 4.86 -2.30 -0.01 0.58 16 18 C -0.12 -2.87 5.48 -24.59 -0.13 -3.01 16 19 C 0.25 6.18 0.76 -89.95 -0.07 6.12 16 20 O -0.56 -14.90 9.72 -59.80 -0.58 -15.48 16 21 C -0.53 -14.55 8.20 -34.44 -0.28 -14.83 16 22 H 0.06 1.58 7.56 -52.49 -0.40 1.18 16 23 C 0.07 1.93 5.28 -17.82 -0.09 1.83 16 24 N -0.89 -24.49 10.71 55.43 0.59 -23.90 16 25 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 28 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 29 C 0.06 1.27 5.51 -2.84 -0.02 1.25 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 0.88 8.00 -51.92 -0.42 0.47 16 36 H 0.07 0.96 7.14 -51.93 -0.37 0.59 16 37 H 0.09 1.17 7.69 -51.92 -0.40 0.77 16 38 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 39 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 40 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 43 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 44 H 0.06 1.21 5.26 -51.93 -0.27 0.94 16 45 H 0.06 0.99 8.10 -51.93 -0.42 0.57 16 46 H 0.06 1.40 8.04 -51.93 -0.42 0.99 16 47 H 0.07 1.89 7.52 -51.93 -0.39 1.50 16 48 H 0.37 10.21 7.52 45.56 0.34 10.55 16 49 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 50 H 0.08 1.71 7.64 -51.93 -0.40 1.31 16 51 H 0.04 0.96 6.86 -51.93 -0.36 0.60 16 LS Contribution 401.00 15.07 6.04 6.04 Total: -1.00 -29.81 401.00 -11.03 -40.84 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: -7.70 Total: 13.44 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -2.69 Total: -11.29 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: -0.44 Total: -34.05 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -1.22 Total: -31.12 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -29.81 -11.03 -40.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930819242.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.892 kcal (2) G-P(sol) polarization free energy of solvation -29.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds