Wall clock time and date at job start Wed Apr 1 2020 05:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 O 1.45202 * 109.47483 * 2 1 4 4 C 1.34225 * 117.00084 * 180.02562 * 3 2 1 5 5 O 1.20827 * 120.00174 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99822 * 179.97438 * 4 3 2 7 7 H 1.09005 * 109.46638 * 60.00596 * 6 4 3 8 8 C 1.52995 * 109.47631 * 300.00458 * 6 4 3 9 9 C 1.52994 * 109.47363 * 174.99626 * 8 6 4 10 10 C 1.50705 * 109.47184 * 179.97438 * 9 8 6 11 11 C 1.38236 * 119.99903 * 269.72851 * 10 9 8 12 12 C 1.38235 * 119.99829 * 179.76956 * 11 10 9 13 13 C 1.38237 * 119.99769 * 0.50335 * 12 11 10 14 14 C 1.38235 * 119.99963 * 359.74905 * 13 12 11 15 15 C 1.38227 * 120.00020 * 0.02562 * 14 13 12 16 16 N 1.46897 * 109.46857 * 179.97438 * 6 4 3 17 17 C 1.47844 * 111.00019 * 55.85292 * 16 6 4 18 18 C 1.54902 * 104.79712 * 213.63303 * 17 16 6 19 19 C 1.55145 * 101.65321 * 37.06652 * 18 17 16 20 20 O 1.42896 * 110.85793 * 82.80012 * 19 18 17 21 21 C 1.50702 * 110.70519 * 205.96650 * 19 18 17 22 22 H 1.07998 * 119.99943 * 116.10964 * 21 19 18 23 23 C 1.37877 * 120.00006 * 296.10651 * 21 19 18 24 24 N 1.31509 * 120.00119 * 5.74182 * 23 21 19 25 25 Si 1.86802 * 119.99803 * 185.74306 * 23 21 19 26 26 H 1.48501 * 109.47171 * 84.99573 * 25 23 21 27 27 H 1.48499 * 109.46930 * 204.99265 * 25 23 21 28 28 H 1.48496 * 109.47184 * 324.99350 * 25 23 21 29 29 C 1.47443 * 111.00446 * 295.00382 * 16 6 4 30 30 H 1.08997 * 109.47299 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47485 * 300.00172 * 1 2 3 32 32 H 1.08999 * 109.47348 * 60.00297 * 1 2 3 33 33 H 1.09005 * 109.47485 * 239.99828 * 2 1 3 34 34 H 1.09006 * 109.47389 * 120.00387 * 2 1 3 35 35 H 1.09008 * 109.47058 * 54.99357 * 8 6 4 36 36 H 1.08999 * 109.46920 * 295.00303 * 8 6 4 37 37 H 1.09007 * 109.46872 * 60.00230 * 9 8 6 38 38 H 1.08999 * 109.47655 * 300.00227 * 9 8 6 39 39 H 1.08002 * 119.99764 * 359.97438 * 11 10 9 40 40 H 1.07991 * 119.99921 * 180.23184 * 12 11 10 41 41 H 1.07999 * 119.99914 * 179.72902 * 13 12 11 42 42 H 1.08006 * 119.99467 * 179.97438 * 14 13 12 43 43 H 1.08012 * 120.00076 * 179.97438 * 15 14 13 44 44 H 1.09004 * 110.37001 * 332.45892 * 17 16 6 45 45 H 1.08998 * 110.37615 * 94.79844 * 17 16 6 46 46 H 1.09004 * 110.98935 * 278.97678 * 18 17 16 47 47 H 1.08996 * 111.02806 * 155.17420 * 18 17 16 48 48 H 0.96706 * 113.99533 * 60.69753 * 20 19 18 49 49 H 0.96994 * 120.00224 * 179.97438 * 24 23 21 50 50 H 1.08998 * 109.88970 * 242.66179 * 29 16 6 51 51 H 1.08996 * 109.88691 * 3.69022 * 29 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0807 0.5865 -0.0015 6 6 3.9207 2.9374 -0.0012 7 1 3.5851 3.4697 0.8889 8 6 3.4487 3.6841 -1.2503 9 6 3.9301 5.1350 -1.1895 10 6 3.4656 5.8704 -2.4203 11 6 4.2633 5.9016 -3.5489 12 6 3.8351 6.5721 -4.6794 13 6 2.6140 7.2201 -4.6778 14 6 1.8188 7.1932 -3.5474 15 6 2.2449 6.5188 -2.4185 16 7 5.3877 2.8604 -0.0010 17 6 5.8762 2.0584 -1.1429 18 6 7.1466 1.3481 -0.6128 19 6 6.7405 1.0307 0.8506 20 8 5.9679 -0.1697 0.9152 21 6 7.9592 0.9257 1.7309 22 1 8.1065 1.6310 2.5354 23 6 8.8860 -0.0707 1.5092 24 7 8.7667 -0.8589 0.4633 25 14 10.3111 -0.3012 2.6947 26 1 9.8772 -1.1536 3.8307 27 1 11.4416 -0.9557 1.9884 28 1 10.7475 1.0223 3.2075 29 6 5.8849 2.2523 1.2467 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.3598 3.6641 -1.2958 36 1 3.8583 3.2022 -2.1381 37 1 5.0190 5.1550 -1.1441 38 1 3.5205 5.6169 -0.3017 39 1 5.2194 5.3994 -3.5485 40 1 4.4566 6.5934 -5.5624 41 1 2.2815 7.7476 -5.5596 42 1 0.8650 7.6998 -3.5461 43 1 1.6237 6.4981 -1.5351 44 1 5.1269 1.3244 -1.4393 45 1 6.1264 2.7068 -1.9826 46 1 8.0082 2.0151 -0.6429 47 1 7.3444 0.4327 -1.1704 48 1 6.4329 -0.9544 0.5940 49 1 9.4189 -1.5596 0.3071 50 1 6.4957 2.9716 1.7921 51 1 5.0451 1.9351 1.8649 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930819242.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:00 Heat of formation + Delta-G solvation = -118.023760 kcal Electronic energy + Delta-G solvation = -32061.396663 eV Core-core repulsion = 27925.139238 eV Total energy + Delta-G solvation = -4136.257425 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.99523 -40.09895 -39.73993 -37.50681 -36.77842 -34.93086 -34.05731 -32.84137 -32.09273 -31.66091 -30.16525 -29.63895 -27.58128 -26.20489 -24.42228 -23.55330 -23.34162 -22.54132 -21.69515 -21.30932 -20.84930 -19.05203 -18.51091 -17.68410 -17.48750 -17.34656 -16.82234 -16.70375 -16.33664 -15.86675 -15.81534 -15.66337 -15.27590 -14.90578 -14.38132 -14.30002 -14.20761 -14.00760 -13.76485 -13.72507 -13.54634 -13.47749 -13.28760 -13.08469 -12.84636 -12.72697 -12.71667 -12.47220 -12.35751 -12.29711 -12.20248 -12.07115 -11.93692 -11.83961 -11.61525 -11.52167 -11.34122 -11.29462 -11.03973 -10.56579 -9.86330 -9.71826 -9.51843 -9.28753 -8.16157 -6.31283 0.54977 0.60350 1.37379 1.39251 1.40966 1.49669 1.81001 2.39523 2.93938 2.98725 3.07526 3.65477 3.87922 3.89911 4.00951 4.03853 4.12797 4.15577 4.22008 4.27122 4.32690 4.37159 4.42251 4.48325 4.50072 4.59828 4.61153 4.68554 4.76512 4.78519 4.81762 4.89635 4.93425 4.96442 5.12381 5.16039 5.16730 5.22490 5.31290 5.33298 5.45091 5.52488 5.61036 5.62068 5.68501 5.72325 5.85668 5.88044 5.89971 6.06546 6.23936 6.24962 6.73146 6.97579 7.39769 7.57011 8.87454 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.010493 B = 0.003276 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.893136 B = 8543.697530 C =10530.355213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.056 3.944 3 O -0.365 6.365 4 C 0.400 3.600 5 O -0.473 6.473 6 C 0.091 3.909 7 H 0.130 0.870 8 C -0.082 4.082 9 C -0.066 4.066 10 C -0.087 4.087 11 C -0.134 4.134 12 C -0.131 4.131 13 C -0.136 4.136 14 C -0.126 4.126 15 C -0.126 4.126 16 N -0.484 5.484 17 C 0.046 3.954 18 C -0.114 4.114 19 C 0.232 3.768 20 O -0.562 6.562 21 C -0.559 4.559 22 H 0.053 0.947 23 C 0.028 3.972 24 N -0.911 5.911 25 Si 0.956 3.044 26 H -0.280 1.280 27 H -0.282 1.282 28 H -0.269 1.269 29 C 0.068 3.932 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.089 0.911 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.118 0.882 40 H 0.132 0.868 41 H 0.138 0.862 42 H 0.141 0.859 43 H 0.137 0.863 44 H 0.048 0.952 45 H 0.078 0.922 46 H 0.044 0.956 47 H 0.046 0.954 48 H 0.356 0.644 49 H 0.265 0.735 50 H 0.080 0.920 51 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.091 12.774 -7.725 22.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.018 4.018 3 O -0.282 6.282 4 C 0.239 3.761 5 O -0.358 6.358 6 C -0.020 4.020 7 H 0.147 0.853 8 C -0.120 4.120 9 C -0.103 4.103 10 C -0.087 4.087 11 C -0.152 4.152 12 C -0.148 4.148 13 C -0.154 4.154 14 C -0.144 4.144 15 C -0.144 4.144 16 N -0.207 5.207 17 C -0.081 4.081 18 C -0.153 4.153 19 C 0.192 3.808 20 O -0.367 6.367 21 C -0.597 4.597 22 H 0.071 0.929 23 C -0.172 4.172 24 N -0.551 5.551 25 Si 0.782 3.218 26 H -0.206 1.206 27 H -0.208 1.208 28 H -0.194 1.194 29 C -0.059 4.059 30 H 0.113 0.887 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.108 0.892 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.137 0.863 40 H 0.150 0.850 41 H 0.156 0.844 42 H 0.159 0.841 43 H 0.154 0.846 44 H 0.066 0.934 45 H 0.096 0.904 46 H 0.063 0.937 47 H 0.065 0.935 48 H 0.202 0.798 49 H 0.074 0.926 50 H 0.098 0.902 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -17.073 13.240 -7.608 22.906 hybrid contribution 1.461 -2.150 0.466 2.641 sum -15.612 11.090 -7.142 20.438 Atomic orbital electron populations 1.21769 0.89908 1.04100 1.03815 1.23087 0.97221 0.80243 1.01297 1.86497 1.24715 1.32624 1.84373 1.25805 0.81147 0.95157 0.73986 1.91046 1.59397 1.43215 1.42126 1.22138 0.88049 0.88279 1.03548 0.85280 1.21418 1.01478 0.95050 0.94074 1.20446 1.01992 0.92513 0.95330 1.20053 0.95046 0.97990 0.95648 1.21289 1.00210 1.00111 0.93626 1.21397 0.97173 0.97857 0.98417 1.21437 0.94716 1.00005 0.99195 1.21452 1.00516 0.99303 0.93144 1.21331 0.95835 0.97819 0.99412 1.64174 1.05239 1.48266 1.03011 1.23097 0.96845 0.94801 0.93361 1.22844 0.95236 0.98216 0.99030 1.19696 0.87347 0.82792 0.91001 1.86334 1.44050 1.18364 1.87995 1.21959 1.07073 1.14572 1.16133 0.92893 1.25676 0.99897 0.95350 0.96267 1.69888 1.37645 1.20092 1.27457 0.85610 0.78779 0.78324 0.79074 1.20552 1.20797 1.19352 1.22658 0.97462 0.94673 0.91143 0.88702 0.91112 0.90860 0.92593 0.93084 0.89246 0.92502 0.90612 0.89526 0.86348 0.84999 0.84380 0.84126 0.84557 0.93436 0.90380 0.93738 0.93526 0.79771 0.92617 0.90171 0.94588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 10.29 71.98 0.74 -1.69 16 2 C 0.06 1.49 6.19 71.98 0.45 1.94 16 3 O -0.36 -10.96 10.03 -51.36 -0.52 -11.48 16 4 C 0.40 14.05 6.01 71.24 0.43 14.48 16 5 O -0.47 -20.79 9.08 29.73 0.27 -20.52 16 6 C 0.09 2.73 2.09 44.17 0.09 2.82 16 7 H 0.13 3.38 8.13 -2.38 -0.02 3.36 16 8 C -0.08 -1.97 4.56 30.59 0.14 -1.83 16 9 C -0.07 -1.39 5.23 29.85 0.16 -1.24 16 10 C -0.09 -1.82 5.13 -19.86 -0.10 -1.92 16 11 C -0.13 -2.89 9.70 22.27 0.22 -2.67 16 12 C -0.13 -2.44 10.05 22.27 0.22 -2.22 16 13 C -0.14 -2.23 10.05 22.27 0.22 -2.01 16 14 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 15 C -0.13 -2.26 9.70 22.27 0.22 -2.04 16 16 N -0.48 -17.58 4.62 -864.77 -4.00 -21.58 16 17 C 0.05 1.83 4.86 86.77 0.42 2.26 16 18 C -0.11 -5.59 5.48 31.98 0.18 -5.41 16 19 C 0.23 11.97 0.76 -10.36 -0.01 11.97 16 20 O -0.56 -31.13 9.72 -125.49 -1.22 -32.35 16 21 C -0.56 -31.18 8.20 25.60 0.21 -30.97 16 22 H 0.05 2.93 7.56 -2.91 -0.02 2.90 16 23 C 0.03 1.55 5.28 84.66 0.45 2.00 16 24 N -0.91 -51.24 10.71 21.45 0.23 -51.01 16 25 Si 0.96 43.87 29.54 68.60 2.03 45.89 16 26 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 27 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 28 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 29 C 0.07 2.99 5.51 86.65 0.48 3.47 16 30 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.06 1.58 8.13 -2.38 -0.02 1.56 16 34 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 35 H 0.09 1.90 8.00 -2.38 -0.02 1.88 16 36 H 0.06 1.51 7.14 -2.39 -0.02 1.50 16 37 H 0.08 1.85 7.69 -2.38 -0.02 1.84 16 38 H 0.09 1.58 8.09 -2.39 -0.02 1.56 16 39 H 0.12 2.55 8.06 -2.91 -0.02 2.53 16 40 H 0.13 1.99 8.06 -2.92 -0.02 1.97 16 41 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 42 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 43 H 0.14 1.93 8.06 -2.90 -0.02 1.91 16 44 H 0.05 2.03 5.26 -2.39 -0.01 2.02 16 45 H 0.08 2.76 8.10 -2.39 -0.02 2.74 16 46 H 0.04 2.23 8.04 -2.39 -0.02 2.22 16 47 H 0.05 2.49 7.52 -2.39 -0.02 2.47 16 48 H 0.36 20.78 7.52 -74.05 -0.56 20.22 16 49 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 50 H 0.08 3.47 7.64 -2.39 -0.02 3.45 16 51 H 0.04 1.61 6.86 -2.39 -0.02 1.59 16 Total: -1.00 -65.75 401.00 1.88 -63.87 By element: Atomic # 1 Polarization: 41.70 SS G_CDS: 0.36 Total: 42.06 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: 4.73 Total: -14.89 kcal Atomic # 7 Polarization: -68.82 SS G_CDS: -3.77 Total: -72.59 kcal Atomic # 8 Polarization: -62.89 SS G_CDS: -1.47 Total: -64.35 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -65.75 1.88 -63.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930819242.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.152 kcal (2) G-P(sol) polarization free energy of solvation -65.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds