Wall clock time and date at job start Wed Apr 1 2020 05:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86792 * 120.00345 * 2 1 4 4 H 1.48500 * 109.47494 * 90.00134 * 3 2 1 5 5 H 1.48501 * 109.47142 * 329.99678 * 3 2 1 6 6 H 1.48506 * 109.47137 * 210.00002 * 3 2 1 7 7 C 1.38818 * 119.99442 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00045 * 19.67955 * 7 2 1 9 9 N 1.36932 * 119.99727 * 199.67793 * 7 2 1 10 10 C 1.47604 * 118.64534 * 28.42282 * 9 7 2 11 11 C 1.54299 * 111.94431 * 137.78039 * 10 9 7 12 12 C 1.50878 * 110.23338 * 319.70228 * 11 10 9 13 13 C 1.52563 * 109.36278 * 91.79515 * 12 11 10 14 14 C 1.47093 * 114.32899 * 274.98978 * 13 12 11 15 15 C 1.44585 * 118.64196 * 208.69299 * 9 7 2 16 16 H 1.08999 * 109.45119 * 150.66705 * 15 9 7 17 17 C 1.52997 * 109.44904 * 30.71671 * 15 9 7 18 18 N 1.46492 * 109.47221 * 55.00271 * 17 15 9 19 19 C 1.34776 * 120.00043 * 179.97438 * 18 17 15 20 20 O 1.21692 * 120.00053 * 0.02562 * 19 18 17 21 21 C 1.46685 * 120.00204 * 179.97438 * 19 18 17 22 22 C 1.38157 * 126.19103 * 179.69358 * 21 19 18 23 23 C 1.38939 * 106.94696 * 179.84609 * 22 21 19 24 24 C 1.36268 * 108.02402 * 0.47036 * 23 22 21 25 25 N 1.34739 * 108.83712 * 359.65258 * 24 23 22 26 26 H 0.97004 * 125.71872 * 180.10359 * 25 24 23 27 27 C 1.51095 * 122.58265 * 179.57215 * 24 23 22 28 28 C 1.53535 * 107.71745 * 344.12831 * 27 24 23 29 29 O 1.42994 * 109.68731 * 48.02480 * 28 27 24 30 30 C 1.43417 * 114.33952 * 288.96417 * 29 28 27 31 31 H 0.96993 * 120.00317 * 174.89930 * 1 2 3 32 32 H 1.09003 * 108.94516 * 258.57225 * 10 9 7 33 33 H 1.08996 * 108.95056 * 17.20083 * 10 9 7 34 34 H 1.09002 * 109.36923 * 199.42129 * 11 10 9 35 35 H 1.09001 * 109.22775 * 79.88821 * 11 10 9 36 36 H 1.08996 * 109.49108 * 331.83031 * 12 11 10 37 37 H 1.09003 * 109.48791 * 211.76392 * 12 11 10 38 38 H 1.09008 * 108.51468 * 153.73165 * 13 12 11 39 39 H 1.09008 * 108.39016 * 36.15607 * 13 12 11 40 40 H 1.08994 * 109.32602 * 302.53633 * 14 13 12 41 41 H 1.09004 * 109.18319 * 182.97034 * 14 13 12 42 42 H 1.09003 * 109.46713 * 175.00015 * 17 15 9 43 43 H 1.09003 * 109.47202 * 295.00106 * 17 15 9 44 44 H 0.97000 * 120.00554 * 359.97438 * 18 17 15 45 45 H 1.08002 * 126.52165 * 359.97438 * 22 21 19 46 46 H 1.08993 * 109.80783 * 103.68289 * 27 24 23 47 47 H 1.09005 * 109.80858 * 224.57362 * 27 24 23 48 48 H 1.08993 * 109.43613 * 168.09396 * 28 27 24 49 49 H 1.09001 * 109.43793 * 287.95870 * 28 27 24 50 50 H 1.09003 * 109.76330 * 170.33255 * 30 29 28 51 51 H 1.08997 * 109.76234 * 291.05425 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0463 1.4000 5 1 1.4478 2.6526 -0.7001 6 1 3.5479 1.4400 -0.7001 7 6 2.0102 -1.2023 0.0005 8 1 1.5175 -2.1103 -0.3140 9 7 3.3195 -1.2368 0.3999 10 6 3.7876 -0.2355 1.3781 11 6 4.7065 -0.8606 2.4484 12 6 4.1777 -2.2105 2.8662 13 6 4.8144 -3.2933 2.0003 14 6 4.1308 -3.5239 0.7185 15 6 4.1880 -2.2489 -0.1586 16 1 5.2110 -1.8737 -0.1873 17 6 3.7291 -2.5869 -1.5785 18 7 3.6713 -1.3606 -2.3779 19 6 3.2902 -1.4155 -3.6695 20 8 2.9937 -2.4837 -4.1715 21 6 3.2318 -0.1876 -4.4698 22 6 2.8666 -0.0969 -5.7991 23 6 2.9475 1.2449 -6.1507 24 6 3.3634 1.9430 -5.0568 25 7 3.5372 1.0845 -4.0330 26 1 3.8282 1.3213 -3.1384 27 6 3.5723 3.4393 -5.0776 28 6 3.6325 3.8823 -6.5464 29 8 2.5406 3.3066 -7.2683 30 6 2.6523 1.8926 -7.4804 31 1 -0.4850 -0.8366 -0.0747 32 1 4.3340 0.5463 0.8505 33 1 2.9229 0.2099 1.8701 34 1 4.7482 -0.2039 3.3174 35 1 5.7093 -0.9768 2.0371 36 1 3.0955 -2.2325 2.7387 37 1 4.4246 -2.3898 3.9127 38 1 4.8201 -4.2272 2.5625 39 1 5.8463 -3.0076 1.7958 40 1 3.0897 -3.7859 0.9069 41 1 4.6202 -4.3447 0.1941 42 1 4.4344 -3.2833 -2.0320 43 1 2.7401 -3.0436 -1.5417 44 1 3.9073 -0.5091 -1.9777 45 1 2.5720 -0.9133 -6.4419 46 1 2.7415 3.9352 -4.5759 47 1 4.5085 3.6885 -4.5778 48 1 3.5701 4.9691 -6.6002 49 1 4.5731 3.5514 -6.9868 50 1 1.7150 1.5046 -7.8794 51 1 3.4632 1.6877 -8.1793 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968884860.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:19 Heat of formation + Delta-G solvation = -22.229157 kcal Electronic energy + Delta-G solvation = -32379.082709 eV Core-core repulsion = 28279.272000 eV Total energy + Delta-G solvation = -4099.810709 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.52852 -39.21959 -38.33475 -37.71275 -34.71632 -33.67229 -32.45968 -32.20220 -31.43241 -31.17634 -28.98260 -27.43090 -25.92042 -25.07909 -23.83157 -23.32451 -22.43704 -21.41855 -20.08844 -19.76598 -19.55688 -18.96411 -18.19158 -16.98666 -16.35736 -15.92809 -15.70304 -15.51656 -15.25608 -15.13035 -14.66195 -14.28655 -14.23918 -14.17384 -13.95222 -13.56094 -13.40995 -13.14110 -13.00360 -12.89424 -12.47101 -12.37865 -12.27745 -12.19923 -11.99250 -11.53057 -11.42952 -11.41249 -10.98923 -10.97447 -10.55613 -10.30373 -10.22741 -10.20580 -9.95261 -9.89928 -9.69039 -9.51752 -9.18061 -8.74328 -8.62724 -8.46504 -7.80668 -7.14920 -6.33589 -3.43908 1.70737 2.68998 3.05758 3.13129 3.21783 3.43836 3.64042 3.77443 3.86436 4.39231 4.57468 4.73062 4.77788 5.01619 5.04653 5.14601 5.18128 5.23411 5.29518 5.32377 5.39757 5.42282 5.45216 5.51239 5.61371 5.66577 5.72875 5.77400 5.83120 5.87059 6.05192 6.09807 6.15123 6.23655 6.25571 6.31391 6.34822 6.41399 6.50817 6.56540 6.63908 6.71616 6.80929 6.84787 6.91983 6.97037 7.03817 7.11048 7.45978 7.99495 8.05777 8.36589 8.67839 8.97110 9.52513 10.04414 11.05309 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014045 B = 0.003598 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.106636 B = 7781.021902 C = 8621.436624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.012 4.012 3 Si 1.066 2.934 4 H -0.293 1.293 5 H -0.301 1.301 6 H -0.299 1.299 7 C -0.342 4.342 8 H 0.068 0.932 9 N -0.596 5.596 10 C 0.124 3.876 11 C -0.132 4.132 12 C -0.109 4.109 13 C -0.102 4.102 14 C -0.134 4.134 15 C 0.173 3.827 16 H 0.045 0.955 17 C 0.133 3.867 18 N -0.695 5.695 19 C 0.586 3.414 20 O -0.546 6.546 21 C -0.041 4.041 22 C -0.095 4.095 23 C -0.223 4.223 24 C 0.049 3.951 25 N -0.521 5.521 26 H 0.416 0.584 27 C -0.090 4.090 28 C 0.072 3.928 29 O -0.381 6.381 30 C 0.139 3.861 31 H 0.266 0.734 32 H 0.018 0.982 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.077 0.923 37 H 0.046 0.954 38 H 0.044 0.956 39 H 0.047 0.953 40 H 0.066 0.934 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.073 0.927 44 H 0.396 0.604 45 H 0.149 0.851 46 H 0.090 0.910 47 H 0.085 0.915 48 H 0.100 0.900 49 H 0.055 0.945 50 H 0.102 0.898 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.346 4.404 -6.152 14.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.214 4.214 3 Si 0.900 3.100 4 H -0.221 1.221 5 H -0.229 1.229 6 H -0.228 1.228 7 C -0.471 4.471 8 H 0.086 0.914 9 N -0.320 5.320 10 C -0.001 4.001 11 C -0.171 4.171 12 C -0.147 4.147 13 C -0.139 4.139 14 C -0.175 4.175 15 C 0.065 3.935 16 H 0.063 0.937 17 C 0.009 3.991 18 N -0.344 5.344 19 C 0.373 3.627 20 O -0.424 6.424 21 C -0.154 4.154 22 C -0.121 4.121 23 C -0.230 4.230 24 C -0.071 4.071 25 N -0.116 5.116 26 H 0.254 0.746 27 C -0.128 4.128 28 C -0.006 4.006 29 O -0.299 6.299 30 C 0.063 3.937 31 H 0.076 0.924 32 H 0.036 0.964 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.091 0.909 44 H 0.231 0.769 45 H 0.166 0.834 46 H 0.109 0.891 47 H 0.103 0.897 48 H 0.118 0.882 49 H 0.074 0.926 50 H 0.120 0.880 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.839 5.355 -6.300 14.441 hybrid contribution 0.598 -1.351 1.088 1.834 sum 12.436 4.005 -5.212 14.067 Atomic orbital electron populations 1.70818 1.06114 1.30306 1.48469 1.26011 0.96673 1.00579 0.98157 0.83794 0.73154 0.76722 0.76285 1.22065 1.22899 1.22763 1.20112 0.86624 0.95131 1.45217 0.91445 1.44047 1.08404 1.34152 1.45362 1.21777 0.97077 0.91269 0.89991 1.21906 0.99072 0.97296 0.98796 1.20952 1.02387 0.94199 0.97117 1.20300 0.99022 0.98192 0.96414 1.21321 1.01385 0.98394 0.96403 1.20552 0.93292 0.89764 0.89923 0.93664 1.21486 1.01771 0.85633 0.90252 1.45577 1.67294 1.11652 1.09848 1.16937 0.77496 0.86801 0.81507 1.90780 1.50582 1.29058 1.72019 1.20654 1.14989 0.83949 0.95782 1.20721 1.02527 0.95842 0.93011 1.19843 1.12240 0.94032 0.96884 1.20178 1.05918 0.92708 0.88246 1.41751 1.51359 1.06499 1.11992 0.74596 1.21034 1.03369 0.88740 0.99635 1.22505 0.90219 0.98518 0.89349 1.88008 1.44917 1.21765 1.75214 1.21013 1.01827 0.79200 0.91687 0.92377 0.96399 0.91091 0.92593 0.93009 0.90449 0.93566 0.93688 0.93439 0.91538 0.92983 0.92645 0.90854 0.76928 0.83370 0.89125 0.89672 0.88167 0.92646 0.88037 0.92245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.33 13.70 55.49 0.76 -26.57 16 2 C -0.01 -0.32 5.16 -17.43 -0.09 -0.41 16 3 Si 1.07 24.18 24.39 -169.99 -4.15 20.04 16 4 H -0.29 -6.42 6.63 56.52 0.37 -6.05 16 5 H -0.30 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.30 -5.83 6.43 56.52 0.36 -5.47 16 7 C -0.34 -8.50 7.92 -15.06 -0.12 -8.62 16 8 H 0.07 1.89 6.94 -52.49 -0.36 1.53 16 9 N -0.60 -12.24 1.53 -164.25 -0.25 -12.49 16 10 C 0.12 2.39 4.02 -2.76 -0.01 2.38 16 11 C -0.13 -2.08 5.71 -27.12 -0.15 -2.23 16 12 C -0.11 -1.71 5.51 -28.02 -0.15 -1.87 16 13 C -0.10 -1.48 5.16 -29.79 -0.15 -1.64 16 14 C -0.13 -2.17 5.06 -28.58 -0.14 -2.31 16 15 C 0.17 3.07 2.19 -67.97 -0.15 2.92 16 16 H 0.05 0.75 8.06 -51.93 -0.42 0.33 16 17 C 0.13 2.49 4.52 -4.05 -0.02 2.47 16 18 N -0.70 -13.32 4.71 -61.62 -0.29 -13.61 16 19 C 0.59 11.82 7.79 -12.85 -0.10 11.72 16 20 O -0.55 -12.37 16.88 5.20 0.09 -12.29 16 21 C -0.04 -0.73 7.07 -81.75 -0.58 -1.31 16 22 C -0.09 -1.57 10.63 -39.35 -0.42 -1.99 16 23 C -0.22 -3.28 6.02 -105.01 -0.63 -3.91 16 24 C 0.05 0.71 7.14 -81.83 -0.58 0.12 16 25 N -0.52 -8.27 5.97 -5.43 -0.03 -8.30 16 26 H 0.42 6.18 8.19 -40.82 -0.33 5.85 16 27 C -0.09 -0.97 6.56 -27.41 -0.18 -1.15 16 28 C 0.07 0.68 6.78 37.43 0.25 0.94 16 29 O -0.38 -4.72 10.74 -35.23 -0.38 -5.10 16 30 C 0.14 1.65 7.25 36.07 0.26 1.92 16 31 H 0.27 8.01 8.73 -40.82 -0.36 7.66 16 32 H 0.02 0.34 5.91 -51.93 -0.31 0.04 16 33 H 0.07 1.55 5.32 -51.93 -0.28 1.27 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.75 7.31 -51.93 -0.38 0.37 16 36 H 0.08 1.46 7.49 -51.93 -0.39 1.07 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 39 H 0.05 0.65 7.35 -51.92 -0.38 0.26 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.05 0.74 8.11 -51.93 -0.42 0.32 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.07 1.59 6.85 -51.93 -0.36 1.23 16 44 H 0.40 7.41 7.05 -40.82 -0.29 7.12 16 45 H 0.15 2.29 8.06 -52.49 -0.42 1.86 16 46 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 50 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 51 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 387.47 15.07 5.84 5.84 Total: -1.00 -31.07 387.47 -9.59 -40.66 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: -8.20 Total: 14.79 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -2.97 Total: -2.97 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: 0.19 Total: -60.97 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.29 Total: -17.38 kcal Atomic # 14 Polarization: 24.18 SS G_CDS: -4.15 Total: 20.04 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.07 -9.59 -40.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968884860.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.431 kcal (2) G-P(sol) polarization free energy of solvation -31.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds