Wall clock time and date at job start Wed Apr 1 2020 05:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99818 * 2 1 4 4 H 1.48490 * 109.47198 * 275.52366 * 3 2 1 5 5 H 1.48502 * 109.46922 * 35.52883 * 3 2 1 6 6 H 1.48507 * 109.46971 * 155.52723 * 3 2 1 7 7 C 1.38813 * 119.99785 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00506 * 336.47360 * 7 2 1 9 9 N 1.36944 * 119.99593 * 156.47413 * 7 2 1 10 10 C 1.47507 * 118.75555 * 139.40837 * 9 7 2 11 11 C 1.53577 * 111.02700 * 138.37132 * 10 9 7 12 12 C 1.51529 * 109.58114 * 320.02032 * 11 10 9 13 13 O 1.42155 * 108.76077 * 91.39892 * 12 11 10 14 14 C 1.38015 * 119.43891 * 272.77204 * 13 12 11 15 15 H 1.08996 * 109.47365 * 303.42719 * 14 13 12 16 16 C 1.53001 * 109.47089 * 183.42924 * 14 13 12 17 17 N 1.46499 * 109.46781 * 65.00529 * 16 14 13 18 18 C 1.34788 * 119.99674 * 179.97438 * 17 16 14 19 19 O 1.21691 * 119.99817 * 359.97438 * 18 17 16 20 20 C 1.46673 * 119.99476 * 179.97438 * 18 17 16 21 21 C 1.38055 * 126.19732 * 179.97438 * 20 18 17 22 22 C 1.39249 * 106.97496 * 180.02562 * 21 20 18 23 23 C 1.35965 * 108.03881 * 0.04891 * 22 21 20 24 24 N 1.35116 * 108.76503 * 359.90893 * 23 22 21 25 25 H 0.97001 * 125.68401 * 180.36863 * 24 23 22 26 26 C 1.51024 * 123.84987 * 179.79760 * 23 22 21 27 27 C 1.53326 * 108.41191 * 343.34466 * 26 23 22 28 28 C 1.53102 * 109.52657 * 50.17130 * 27 26 23 29 29 C 1.50836 * 127.70834 * 180.02562 * 22 21 20 30 30 C 1.45118 * 118.75865 * 319.40790 * 9 7 2 31 31 H 0.96993 * 119.99989 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.16835 * 17.97284 * 10 9 7 33 33 H 1.08994 * 109.12305 * 258.74382 * 10 9 7 34 34 H 1.08996 * 109.45101 * 199.98589 * 11 10 9 35 35 H 1.09003 * 109.45171 * 80.05571 * 11 10 9 36 36 H 1.09006 * 109.59325 * 331.61628 * 12 11 10 37 37 H 1.08998 * 109.59082 * 211.18481 * 12 11 10 38 38 H 1.08997 * 109.47467 * 305.00599 * 16 14 13 39 39 H 1.08994 * 109.46998 * 185.00404 * 16 14 13 40 40 H 0.96998 * 120.00305 * 0.02562 * 17 16 14 41 41 H 1.07994 * 126.51863 * 359.97438 * 21 20 18 42 42 H 1.09000 * 109.67427 * 223.61539 * 26 23 22 43 43 H 1.08997 * 109.67689 * 103.07582 * 26 23 22 44 44 H 1.08994 * 109.46075 * 290.14989 * 27 26 23 45 45 H 1.08997 * 109.45605 * 170.18454 * 27 26 23 46 46 H 1.08993 * 109.47246 * 169.59508 * 28 27 26 47 47 H 1.08998 * 109.48001 * 49.58490 * 28 27 26 48 48 H 1.09001 * 109.68648 * 283.24969 * 29 22 21 49 49 H 1.09012 * 109.67749 * 43.79817 * 29 22 21 50 50 H 1.08999 * 109.46220 * 149.27479 * 30 9 7 51 51 H 1.09001 * 109.46375 * 29.30675 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3810 2.1138 -1.3935 5 1 1.5109 2.6161 0.8136 6 1 3.6013 1.4093 0.5800 7 6 2.0103 -1.2022 -0.0005 8 1 1.5377 -2.0988 0.3724 9 7 3.2943 -1.2512 -0.4740 10 6 4.2860 -2.0707 0.2478 11 6 5.1795 -2.8448 -0.7325 12 6 4.3409 -3.3630 -1.8833 13 8 4.3495 -2.3974 -2.9265 14 6 3.4154 -1.3814 -2.9181 15 1 2.4132 -1.8094 -2.8941 16 6 3.5763 -0.5302 -4.1792 17 7 3.2581 -1.3394 -5.3583 18 6 3.3311 -0.7948 -6.5891 19 8 3.6608 0.3692 -6.7208 20 6 3.0131 -1.6051 -7.7695 21 6 3.0449 -1.1804 -9.0827 22 6 2.6734 -2.2668 -9.8706 23 6 2.4236 -3.3188 -9.0462 24 7 2.6281 -2.9283 -7.7690 25 1 2.5251 -3.4873 -6.9830 26 6 1.9879 -4.6816 -9.5298 27 6 1.4878 -4.5462 -10.9729 28 6 2.5265 -3.7901 -11.8056 29 6 2.5537 -2.3187 -11.3733 30 6 3.6281 -0.4950 -1.6667 31 1 -0.4850 0.8400 0.0004 32 1 3.7644 -2.7786 0.8920 33 1 4.9083 -1.4197 0.8617 34 1 5.6440 -3.6841 -0.2150 35 1 5.9547 -2.1823 -1.1177 36 1 3.3176 -3.5266 -1.5452 37 1 4.7613 -4.2998 -2.2490 38 1 4.6043 -0.1749 -4.2491 39 1 2.8996 0.3228 -4.1306 40 1 2.9942 -2.2669 -5.2532 41 1 3.3072 -0.1929 -9.4326 42 1 1.1838 -5.0560 -8.8963 43 1 2.8324 -5.3699 -9.4971 44 1 0.5463 -3.9972 -10.9810 45 1 1.3335 -5.5379 -11.3981 46 1 2.2621 -3.8537 -12.8611 47 1 3.5099 -4.2336 -11.6500 48 1 1.6325 -1.8266 -11.6855 49 1 3.4095 -1.8187 -11.8271 50 1 4.6705 -0.1805 -1.6175 51 1 2.9864 0.3838 -1.7310 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073844906.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:31 Heat of formation + Delta-G solvation = -26.724679 kcal Electronic energy + Delta-G solvation = -31023.371026 eV Core-core repulsion = 26923.365377 eV Total energy + Delta-G solvation = -4100.005649 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.72222 -39.53806 -38.73095 -36.52326 -35.41403 -34.74974 -32.70256 -32.34460 -31.57636 -29.76959 -29.12429 -28.42887 -26.19547 -25.48206 -24.02334 -22.80358 -22.32546 -21.47478 -21.16272 -20.04477 -19.71653 -18.72026 -18.42801 -17.04875 -16.41575 -16.15904 -15.93353 -15.72702 -15.37407 -14.86443 -14.68856 -14.60697 -14.17415 -13.98631 -13.89561 -13.67372 -13.57592 -13.31116 -13.26154 -12.72488 -12.68936 -12.53384 -12.49547 -12.38883 -12.05509 -12.00692 -11.65582 -11.22601 -11.16731 -11.02094 -10.85018 -10.78326 -10.55435 -10.46448 -10.12127 -10.02463 -9.82017 -9.73433 -9.04991 -8.99609 -8.89179 -8.57925 -8.04345 -6.89904 -6.12981 -3.57392 1.42215 2.53939 2.88358 3.22874 3.26361 3.41383 3.46078 3.47007 4.03011 4.37952 4.42539 4.53192 4.57358 4.79446 4.84796 4.87942 5.06623 5.18532 5.20844 5.25209 5.28291 5.33531 5.37764 5.42389 5.53312 5.56439 5.62207 5.65122 5.71265 5.80709 5.84425 5.91597 5.93618 5.99878 6.02335 6.05545 6.09930 6.14086 6.30067 6.32532 6.41773 6.48229 6.59476 6.68959 6.70621 6.73558 6.84071 7.23364 7.60072 7.95854 8.04359 8.26330 8.28256 8.89294 9.58687 9.96904 11.01853 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015444 B = 0.002447 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.615702 B =11439.353525 C =12010.217496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.043 3.957 3 Si 0.872 3.128 4 H -0.282 1.282 5 H -0.298 1.298 6 H -0.269 1.269 7 C -0.284 4.284 8 H 0.077 0.923 9 N -0.603 5.603 10 C 0.144 3.856 11 C -0.168 4.168 12 C 0.086 3.914 13 O -0.395 6.395 14 C 0.071 3.929 15 H 0.063 0.937 16 C 0.132 3.868 17 N -0.719 5.719 18 C 0.586 3.414 19 O -0.534 6.534 20 C -0.050 4.050 21 C -0.100 4.100 22 C -0.177 4.177 23 C 0.048 3.952 24 N -0.530 5.530 25 H 0.415 0.585 26 C -0.054 4.054 27 C -0.113 4.113 28 C -0.120 4.120 29 C -0.046 4.046 30 C 0.119 3.881 31 H 0.265 0.735 32 H 0.059 0.941 33 H 0.021 0.979 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.396 0.604 41 H 0.146 0.854 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.064 0.936 48 H 0.069 0.931 49 H 0.070 0.930 50 H 0.046 0.954 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.896 -11.334 -19.476 23.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.159 4.159 3 Si 0.701 3.299 4 H -0.210 1.210 5 H -0.226 1.226 6 H -0.193 1.193 7 C -0.412 4.412 8 H 0.094 0.906 9 N -0.326 5.326 10 C 0.019 3.981 11 C -0.207 4.207 12 C 0.010 3.990 13 O -0.315 6.315 14 C 0.009 3.991 15 H 0.081 0.919 16 C 0.008 3.992 17 N -0.369 5.369 18 C 0.373 3.627 19 O -0.411 6.411 20 C -0.163 4.163 21 C -0.126 4.126 22 C -0.183 4.183 23 C -0.070 4.070 24 N -0.125 5.125 25 H 0.252 0.748 26 C -0.092 4.092 27 C -0.151 4.151 28 C -0.157 4.157 29 C -0.084 4.084 30 C -0.009 4.009 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.039 0.961 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.229 0.771 41 H 0.164 0.836 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.083 0.917 48 H 0.087 0.913 49 H 0.089 0.911 50 H 0.065 0.935 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.111 -10.446 -19.438 22.897 hybrid contribution 0.021 0.354 1.005 1.066 sum 6.132 -10.093 -18.433 21.891 Atomic orbital electron populations 1.69879 1.06082 1.27029 1.50249 1.25534 0.95041 0.97899 0.97446 0.87003 0.80840 0.84617 0.77437 1.20953 1.22556 1.19336 1.18781 0.87137 0.94457 1.40868 0.90573 1.44014 1.08188 1.55399 1.25011 1.21263 0.90709 0.93377 0.92762 1.22558 0.99566 1.00403 0.98137 1.22004 1.00381 0.89477 0.87161 1.86085 1.56770 1.39372 1.49228 1.22521 0.92503 0.89499 0.94551 0.91919 1.21477 1.01930 0.93610 0.82177 1.45844 1.69814 1.15340 1.05925 1.17064 0.77606 0.86386 0.81654 1.90834 1.48368 1.16097 1.85837 1.20464 1.15707 0.84525 0.95613 1.20982 1.02505 0.99236 0.89922 1.19248 1.10417 0.93240 0.95407 1.20443 1.06061 0.97346 0.83185 1.41738 1.52667 1.10281 1.07861 0.74754 1.20314 1.00915 0.90889 0.97043 1.21514 0.99249 1.00759 0.93535 1.21602 0.99439 0.95474 0.99190 1.20053 1.01851 0.96346 0.90127 1.21826 0.98672 0.94423 0.85951 0.92504 0.92260 0.96084 0.91537 0.91636 0.91897 0.90891 0.90762 0.89853 0.77087 0.83591 0.90619 0.90258 0.91328 0.91193 0.91593 0.91726 0.91268 0.91123 0.93538 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.35 13.97 55.49 0.78 -25.58 16 2 C 0.04 1.19 5.22 -17.43 -0.09 1.10 16 3 Si 0.87 21.79 25.26 -169.99 -4.29 17.50 16 4 H -0.28 -6.87 6.69 56.52 0.38 -6.49 16 5 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 6 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.28 -7.56 9.69 -15.06 -0.15 -7.70 16 8 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 9 N -0.60 -13.63 1.75 -172.02 -0.30 -13.93 16 10 C 0.14 2.73 6.30 -3.19 -0.02 2.71 16 11 C -0.17 -2.58 5.78 -27.18 -0.16 -2.74 16 12 C 0.09 1.33 6.37 36.41 0.23 1.56 16 13 O -0.40 -6.65 9.38 -26.53 -0.25 -6.90 16 14 C 0.07 1.29 2.68 -25.77 -0.07 1.22 16 15 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 16 C 0.13 2.24 5.34 -4.04 -0.02 2.22 16 17 N -0.72 -10.71 5.49 -61.62 -0.34 -11.05 16 18 C 0.59 9.45 7.79 -12.85 -0.10 9.35 16 19 O -0.53 -10.46 16.88 5.20 0.09 -10.37 16 20 C -0.05 -0.69 7.06 -81.84 -0.58 -1.26 16 21 C -0.10 -1.31 10.62 -39.27 -0.42 -1.73 16 22 C -0.18 -1.93 5.91 -105.00 -0.62 -2.55 16 23 C 0.05 0.47 7.02 -81.80 -0.57 -0.10 16 24 N -0.53 -5.56 5.98 -5.50 -0.03 -5.59 16 25 H 0.42 3.37 8.19 -40.82 -0.33 3.03 16 26 C -0.05 -0.36 6.30 -27.56 -0.17 -0.54 16 27 C -0.11 -0.67 5.89 -26.51 -0.16 -0.83 16 28 C -0.12 -0.76 5.91 -26.48 -0.16 -0.92 16 29 C -0.05 -0.38 6.28 -27.62 -0.17 -0.55 16 30 C 0.12 2.52 3.93 -3.83 -0.02 2.50 16 31 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.06 1.12 7.91 -51.93 -0.41 0.71 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 1.04 8.01 -51.93 -0.42 0.62 16 36 H 0.06 1.10 7.40 -51.93 -0.38 0.71 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.40 4.98 7.59 -40.82 -0.31 4.67 16 41 H 0.15 1.87 8.06 -52.49 -0.42 1.45 16 42 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.44 8.11 -51.93 -0.42 0.02 16 45 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.06 0.42 8.11 -51.93 -0.42 0.00 16 48 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 50 H 0.05 0.93 8.11 -51.93 -0.42 0.51 16 51 H 0.06 1.45 3.64 -51.93 -0.19 1.26 16 LS Contribution 396.91 15.07 5.98 5.98 Total: -1.00 -32.47 396.91 -9.99 -42.47 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -8.39 Total: 5.74 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -3.24 Total: 1.74 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: 0.10 Total: -56.15 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.16 Total: -17.27 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.29 Total: 17.50 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.47 -9.99 -42.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073844906.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.742 kcal (2) G-P(sol) polarization free energy of solvation -32.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds