Wall clock time and date at job start Wed Apr 1 2020 05:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99818 * 2 1 4 4 H 1.48490 * 109.47198 * 275.52366 * 3 2 1 5 5 H 1.48502 * 109.46922 * 35.52883 * 3 2 1 6 6 H 1.48507 * 109.46971 * 155.52723 * 3 2 1 7 7 C 1.38813 * 119.99785 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00506 * 336.47360 * 7 2 1 9 9 N 1.36944 * 119.99593 * 156.47413 * 7 2 1 10 10 C 1.47507 * 118.75555 * 139.40837 * 9 7 2 11 11 C 1.53577 * 111.02700 * 138.37132 * 10 9 7 12 12 C 1.51529 * 109.58114 * 320.02032 * 11 10 9 13 13 O 1.42155 * 108.76077 * 91.39892 * 12 11 10 14 14 C 1.38015 * 119.43891 * 272.77204 * 13 12 11 15 15 H 1.08996 * 109.47365 * 303.42719 * 14 13 12 16 16 C 1.53001 * 109.47089 * 183.42924 * 14 13 12 17 17 N 1.46499 * 109.46781 * 65.00529 * 16 14 13 18 18 C 1.34788 * 119.99674 * 179.97438 * 17 16 14 19 19 O 1.21691 * 119.99817 * 359.97438 * 18 17 16 20 20 C 1.46673 * 119.99476 * 179.97438 * 18 17 16 21 21 C 1.38055 * 126.19732 * 179.97438 * 20 18 17 22 22 C 1.39249 * 106.97496 * 180.02562 * 21 20 18 23 23 C 1.35965 * 108.03881 * 0.04891 * 22 21 20 24 24 N 1.35116 * 108.76503 * 359.90893 * 23 22 21 25 25 H 0.97001 * 125.68401 * 180.36863 * 24 23 22 26 26 C 1.51024 * 123.84987 * 179.79760 * 23 22 21 27 27 C 1.53326 * 108.41191 * 343.34466 * 26 23 22 28 28 C 1.53102 * 109.52657 * 50.17130 * 27 26 23 29 29 C 1.50836 * 127.70834 * 180.02562 * 22 21 20 30 30 C 1.45118 * 118.75865 * 319.40790 * 9 7 2 31 31 H 0.96993 * 119.99989 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.16835 * 17.97284 * 10 9 7 33 33 H 1.08994 * 109.12305 * 258.74382 * 10 9 7 34 34 H 1.08996 * 109.45101 * 199.98589 * 11 10 9 35 35 H 1.09003 * 109.45171 * 80.05571 * 11 10 9 36 36 H 1.09006 * 109.59325 * 331.61628 * 12 11 10 37 37 H 1.08998 * 109.59082 * 211.18481 * 12 11 10 38 38 H 1.08997 * 109.47467 * 305.00599 * 16 14 13 39 39 H 1.08994 * 109.46998 * 185.00404 * 16 14 13 40 40 H 0.96998 * 120.00305 * 0.02562 * 17 16 14 41 41 H 1.07994 * 126.51863 * 359.97438 * 21 20 18 42 42 H 1.09000 * 109.67427 * 223.61539 * 26 23 22 43 43 H 1.08997 * 109.67689 * 103.07582 * 26 23 22 44 44 H 1.08994 * 109.46075 * 290.14989 * 27 26 23 45 45 H 1.08997 * 109.45605 * 170.18454 * 27 26 23 46 46 H 1.08993 * 109.47246 * 169.59508 * 28 27 26 47 47 H 1.08998 * 109.48001 * 49.58490 * 28 27 26 48 48 H 1.09001 * 109.68648 * 283.24969 * 29 22 21 49 49 H 1.09012 * 109.67749 * 43.79817 * 29 22 21 50 50 H 1.08999 * 109.46220 * 149.27479 * 30 9 7 51 51 H 1.09001 * 109.46375 * 29.30675 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3810 2.1138 -1.3935 5 1 1.5109 2.6161 0.8136 6 1 3.6013 1.4093 0.5800 7 6 2.0103 -1.2022 -0.0005 8 1 1.5377 -2.0988 0.3724 9 7 3.2943 -1.2512 -0.4740 10 6 4.2860 -2.0707 0.2478 11 6 5.1795 -2.8448 -0.7325 12 6 4.3409 -3.3630 -1.8833 13 8 4.3495 -2.3974 -2.9265 14 6 3.4154 -1.3814 -2.9181 15 1 2.4132 -1.8094 -2.8941 16 6 3.5763 -0.5302 -4.1792 17 7 3.2581 -1.3394 -5.3583 18 6 3.3311 -0.7948 -6.5891 19 8 3.6608 0.3692 -6.7208 20 6 3.0131 -1.6051 -7.7695 21 6 3.0449 -1.1804 -9.0827 22 6 2.6734 -2.2668 -9.8706 23 6 2.4236 -3.3188 -9.0462 24 7 2.6281 -2.9283 -7.7690 25 1 2.5251 -3.4873 -6.9830 26 6 1.9879 -4.6816 -9.5298 27 6 1.4878 -4.5462 -10.9729 28 6 2.5265 -3.7901 -11.8056 29 6 2.5537 -2.3187 -11.3733 30 6 3.6281 -0.4950 -1.6667 31 1 -0.4850 0.8400 0.0004 32 1 3.7644 -2.7786 0.8920 33 1 4.9083 -1.4197 0.8617 34 1 5.6440 -3.6841 -0.2150 35 1 5.9547 -2.1823 -1.1177 36 1 3.3176 -3.5266 -1.5452 37 1 4.7613 -4.2998 -2.2490 38 1 4.6043 -0.1749 -4.2491 39 1 2.8996 0.3228 -4.1306 40 1 2.9942 -2.2669 -5.2532 41 1 3.3072 -0.1929 -9.4326 42 1 1.1838 -5.0560 -8.8963 43 1 2.8324 -5.3699 -9.4971 44 1 0.5463 -3.9972 -10.9810 45 1 1.3335 -5.5379 -11.3981 46 1 2.2621 -3.8537 -12.8611 47 1 3.5099 -4.2336 -11.6500 48 1 1.6325 -1.8266 -11.6855 49 1 3.4095 -1.8187 -11.8271 50 1 4.6705 -0.1805 -1.6175 51 1 2.9864 0.3838 -1.7310 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073844906.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:30 Heat of formation + Delta-G solvation = -47.855015 kcal Electronic energy + Delta-G solvation = -31024.287306 eV Core-core repulsion = 26923.365377 eV Total energy + Delta-G solvation = -4100.921929 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.61531 -40.92317 -40.06782 -37.16054 -37.09059 -36.14299 -34.27420 -33.42747 -33.10391 -30.92893 -30.02288 -29.54537 -27.66161 -27.06511 -25.14334 -24.14239 -23.24491 -22.67019 -22.24351 -21.32746 -21.10022 -19.49369 -19.44882 -18.94546 -17.92537 -17.58431 -17.19879 -16.93618 -16.47253 -16.31758 -15.98248 -15.74939 -15.48921 -15.12631 -14.85440 -14.81900 -14.66054 -14.51797 -14.33502 -14.16063 -14.00864 -13.85312 -13.75092 -13.49068 -13.26747 -13.21755 -12.92819 -12.65254 -12.46008 -12.32492 -12.09517 -11.83910 -11.64914 -11.62823 -11.54319 -11.38200 -11.33258 -11.31914 -10.73812 -10.40912 -10.33273 -9.80976 -8.92516 -8.78645 -8.29123 -5.68835 0.38194 1.24944 1.35371 1.45102 1.66080 1.93360 2.09507 2.29413 2.34131 2.65572 2.95328 3.26341 3.73523 3.80467 3.93376 3.98757 4.00408 4.10127 4.10439 4.19229 4.21760 4.39092 4.40051 4.40988 4.48231 4.54542 4.63227 4.66143 4.69166 4.70839 4.73055 4.75508 4.95083 4.98247 4.99195 5.10195 5.14239 5.15541 5.18071 5.20407 5.25309 5.32461 5.34517 5.38745 5.55136 5.83806 5.88665 5.92004 6.10604 6.35708 6.52783 6.64878 6.94695 7.03185 7.55793 7.95153 8.89729 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015444 B = 0.002447 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.615702 B =11439.353525 C =12010.217496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.927 3.073 4 H -0.275 1.275 5 H -0.305 1.305 6 H -0.263 1.263 7 C -0.265 4.265 8 H 0.046 0.954 9 N -0.613 5.613 10 C 0.137 3.863 11 C -0.156 4.156 12 C 0.082 3.918 13 O -0.390 6.390 14 C 0.093 3.907 15 H 0.042 0.958 16 C 0.139 3.861 17 N -0.709 5.709 18 C 0.586 3.414 19 O -0.578 6.578 20 C -0.079 4.079 21 C -0.113 4.113 22 C -0.192 4.192 23 C 0.064 3.936 24 N -0.520 5.520 25 H 0.426 0.574 26 C -0.054 4.054 27 C -0.112 4.112 28 C -0.117 4.117 29 C -0.048 4.048 30 C 0.113 3.887 31 H 0.264 0.736 32 H 0.055 0.945 33 H 0.023 0.977 34 H 0.103 0.897 35 H 0.067 0.933 36 H 0.039 0.961 37 H 0.113 0.887 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.408 0.592 41 H 0.138 0.862 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.062 0.938 45 H 0.092 0.908 46 H 0.081 0.919 47 H 0.064 0.936 48 H 0.071 0.929 49 H 0.071 0.929 50 H 0.061 0.939 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.537 -13.865 -21.139 26.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.205 4.205 3 Si 0.756 3.244 4 H -0.202 1.202 5 H -0.233 1.233 6 H -0.187 1.187 7 C -0.395 4.395 8 H 0.064 0.936 9 N -0.336 5.336 10 C 0.013 3.987 11 C -0.195 4.195 12 C 0.006 3.994 13 O -0.309 6.309 14 C 0.031 3.969 15 H 0.059 0.941 16 C 0.014 3.986 17 N -0.360 5.360 18 C 0.375 3.625 19 O -0.458 6.458 20 C -0.191 4.191 21 C -0.140 4.140 22 C -0.198 4.198 23 C -0.056 4.056 24 N -0.117 5.117 25 H 0.266 0.734 26 C -0.092 4.092 27 C -0.150 4.150 28 C -0.154 4.154 29 C -0.086 4.086 30 C -0.015 4.015 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.041 0.959 34 H 0.121 0.879 35 H 0.086 0.914 36 H 0.058 0.942 37 H 0.131 0.869 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.244 0.756 41 H 0.155 0.845 42 H 0.108 0.892 43 H 0.114 0.886 44 H 0.081 0.919 45 H 0.110 0.890 46 H 0.100 0.900 47 H 0.083 0.917 48 H 0.089 0.911 49 H 0.090 0.910 50 H 0.079 0.921 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.789 -13.027 -21.090 25.984 hybrid contribution -0.477 0.985 1.489 1.848 sum 7.312 -12.042 -19.601 24.139 Atomic orbital electron populations 1.69982 1.07487 1.27505 1.53096 1.26043 0.95488 1.00675 0.98324 0.86102 0.79625 0.81189 0.77528 1.20244 1.23311 1.18709 1.18676 0.88696 0.93119 1.39019 0.93626 1.44134 1.07539 1.56031 1.25939 1.21441 0.90412 0.93195 0.93650 1.22467 0.98568 1.01114 0.97306 1.22223 0.99456 0.90497 0.87175 1.86111 1.55924 1.39049 1.49840 1.22080 0.91807 0.89273 0.93738 0.94055 1.21243 1.01628 0.93187 0.82499 1.45657 1.69500 1.15707 1.05109 1.17373 0.76714 0.86077 0.82311 1.90798 1.50558 1.18002 1.86469 1.20061 1.18564 0.85915 0.94595 1.21164 1.02613 0.99750 0.90458 1.19607 1.10464 0.92726 0.96970 1.21095 1.03455 0.98522 0.82519 1.41707 1.51945 1.09229 1.08787 0.73434 1.20520 1.02014 0.88944 0.97699 1.21550 0.98681 1.01846 0.92920 1.21603 0.99714 0.93862 1.00238 1.20141 1.02014 0.98102 0.88302 1.21881 0.98834 0.94110 0.86630 0.92706 0.92607 0.95930 0.87880 0.91433 0.94240 0.86900 0.90581 0.91470 0.75644 0.84457 0.89164 0.88570 0.91871 0.88984 0.89990 0.91687 0.91059 0.91039 0.92065 0.94231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.20 13.97 21.65 0.30 -56.90 16 2 C -0.01 -0.42 5.22 84.86 0.44 0.02 16 3 Si 0.93 45.93 25.26 68.60 1.73 47.67 16 4 H -0.28 -13.22 6.69 99.48 0.67 -12.55 16 5 H -0.30 -15.32 7.11 99.48 0.71 -14.61 16 6 H -0.26 -12.61 7.11 99.48 0.71 -11.90 16 7 C -0.27 -14.41 9.69 84.03 0.81 -13.59 16 8 H 0.05 2.73 8.06 -2.91 -0.02 2.70 16 9 N -0.61 -27.49 1.75 -698.14 -1.22 -28.71 16 10 C 0.14 4.99 6.30 86.38 0.54 5.53 16 11 C -0.16 -4.29 5.78 30.31 0.18 -4.11 16 12 C 0.08 2.31 6.37 71.50 0.46 2.76 16 13 O -0.39 -12.29 9.38 -117.86 -1.11 -13.40 16 14 C 0.09 3.34 2.68 31.21 0.08 3.43 16 15 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 16 C 0.14 4.74 5.34 86.38 0.46 5.20 16 17 N -0.71 -21.05 5.49 -467.08 -2.56 -23.62 16 18 C 0.59 19.24 7.79 86.44 0.67 19.91 16 19 O -0.58 -23.45 16.88 -4.32 -0.07 -23.52 16 20 C -0.08 -2.15 7.06 40.37 0.29 -1.86 16 21 C -0.11 -2.99 10.62 22.47 0.24 -2.76 16 22 C -0.19 -3.99 5.91 -20.11 -0.12 -4.10 16 23 C 0.06 1.13 7.02 41.63 0.29 1.42 16 24 N -0.52 -10.19 5.98 -171.30 -1.02 -11.21 16 25 H 0.43 6.11 8.19 -92.71 -0.76 5.35 16 26 C -0.05 -0.54 6.30 30.06 0.19 -0.35 16 27 C -0.11 -0.96 5.89 30.74 0.18 -0.78 16 28 C -0.12 -1.15 5.91 30.76 0.18 -0.97 16 29 C -0.05 -0.71 6.28 30.02 0.19 -0.52 16 30 C 0.11 4.70 3.93 87.26 0.34 5.04 16 31 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 32 H 0.06 2.05 7.91 -2.39 -0.02 2.03 16 33 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.07 1.89 8.01 -2.39 -0.02 1.87 16 36 H 0.04 1.32 7.40 -2.38 -0.02 1.30 16 37 H 0.11 2.35 8.14 -2.39 -0.02 2.34 16 38 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.41 9.93 7.59 -92.71 -0.70 9.23 16 41 H 0.14 3.74 8.06 -2.91 -0.02 3.71 16 42 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.06 0.63 8.11 -2.39 -0.02 0.61 16 45 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 46 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.06 0.66 8.11 -2.39 -0.02 0.64 16 48 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 50 H 0.06 2.37 8.11 -2.39 -0.02 2.35 16 51 H 0.04 1.85 3.64 -2.39 -0.01 1.84 16 Total: -1.00 -72.83 396.91 0.92 -71.91 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: -0.56 Total: 23.53 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: 5.43 Total: 14.26 kcal Atomic # 7 Polarization: -115.94 SS G_CDS: -4.50 Total: -120.44 kcal Atomic # 8 Polarization: -35.74 SS G_CDS: -1.18 Total: -36.92 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.73 Total: 47.67 kcal Total: -72.83 0.92 -71.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073844906.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.053 kcal (2) G-P(sol) polarization free energy of solvation -72.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds