Wall clock time and date at job start Wed Apr 1 2020 05:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 120.00084 * 2 1 4 4 H 1.48504 * 109.47225 * 240.00295 * 3 2 1 5 5 H 1.48500 * 109.47187 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47461 * 120.00148 * 3 2 1 7 7 C 1.38813 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00079 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99761 * 359.97438 * 7 2 1 10 10 C 1.46507 * 119.99980 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.57159 * 324.84494 * 10 9 7 12 12 C 1.53798 * 109.52260 * 204.68938 * 10 9 7 13 13 C 1.52447 * 109.42215 * 162.22089 * 12 10 9 14 14 C 1.53969 * 110.73349 * 113.72803 * 13 12 10 15 15 C 1.52883 * 109.71314 * 315.64724 * 14 13 12 16 16 C 1.53046 * 109.24642 * 287.12133 * 15 14 13 17 17 N 1.45343 * 108.62486 * 77.97701 * 16 15 14 18 18 C 1.34777 * 120.35286 * 223.25214 * 17 16 15 19 19 O 1.21686 * 120.00034 * 180.79152 * 18 17 16 20 20 C 1.46681 * 120.00140 * 0.80072 * 18 17 16 21 21 C 1.38151 * 126.19433 * 154.47566 * 20 18 17 22 22 C 1.38942 * 106.95354 * 179.97438 * 21 20 18 23 23 C 1.36273 * 108.01949 * 0.06726 * 22 21 20 24 24 N 1.34747 * 108.83980 * 359.88841 * 23 22 21 25 25 H 0.96994 * 125.71662 * 180.13405 * 24 23 22 26 26 C 1.51086 * 122.58234 * 179.80195 * 23 22 21 27 27 C 1.53541 * 107.71714 * 344.13597 * 26 23 22 28 28 O 1.42993 * 109.68352 * 48.02963 * 27 26 23 29 29 C 1.43425 * 114.33459 * 288.95886 * 28 27 26 30 30 C 1.46949 * 119.29301 * 42.98008 * 17 16 15 31 31 H 0.96994 * 119.99544 * 359.97438 * 1 2 3 32 32 H 0.96999 * 120.00729 * 0.02562 * 9 7 2 33 33 H 1.09000 * 109.47761 * 282.20624 * 12 10 9 34 34 H 1.09005 * 109.47994 * 42.23559 * 12 10 9 35 35 H 1.08996 * 109.22684 * 234.05180 * 13 12 10 36 36 H 1.08999 * 109.22295 * 353.44827 * 13 12 10 37 37 H 1.08994 * 109.43084 * 75.72451 * 14 13 12 38 38 H 1.09000 * 109.43287 * 195.62546 * 14 13 12 39 39 H 1.09000 * 109.47911 * 47.09247 * 15 14 13 40 40 H 1.09003 * 109.47949 * 167.11186 * 15 14 13 41 41 H 1.08999 * 109.64435 * 318.13785 * 16 15 14 42 42 H 1.09000 * 109.49864 * 197.72797 * 16 15 14 43 43 H 1.08006 * 126.52154 * 0.02816 * 21 20 18 44 44 H 1.09008 * 109.81000 * 224.58655 * 26 23 22 45 45 H 1.08996 * 109.81297 * 103.69407 * 26 23 22 46 46 H 1.09003 * 109.44037 * 287.96715 * 27 26 23 47 47 H 1.09000 * 109.44064 * 168.09369 * 27 26 23 48 48 H 1.09002 * 109.75937 * 170.33696 * 29 28 27 49 49 H 1.08998 * 109.76457 * 291.05400 * 29 28 27 50 50 H 1.09004 * 109.53624 * 8.53445 * 30 17 16 51 51 H 1.08996 * 109.53826 * 128.69084 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9679 -3.5532 -0.5919 12 6 1.1745 -4.7604 -0.6060 13 6 2.0472 -5.9421 -1.0134 14 6 1.7307 -7.1768 -0.1496 15 6 1.6131 -6.7633 1.3176 16 6 3.0067 -6.4493 1.8665 17 7 3.4015 -5.1294 1.4034 18 6 4.6519 -4.9127 0.9494 19 8 4.9799 -3.8018 0.5767 20 6 5.6173 -6.0161 0.9044 21 6 6.7064 -6.1133 0.0600 22 6 7.3434 -7.3119 0.3567 23 6 6.6489 -7.9218 1.3580 24 7 5.6023 -7.1442 1.6979 25 1 4.9482 -7.3440 2.3857 26 6 7.0566 -9.2576 1.9344 27 6 8.0489 -9.9047 0.9577 28 8 9.0511 -8.9537 0.5888 29 6 8.5823 -7.9034 -0.2680 30 6 2.4211 -4.0351 1.4298 31 1 -0.4849 0.8400 0.0004 32 1 0.3556 -2.3881 -0.0005 33 1 0.4428 -5.0866 0.1331 34 1 0.6569 -4.3715 -1.4829 35 1 1.8628 -6.1802 -2.0609 36 1 3.0961 -5.6746 -0.8854 37 1 0.7899 -7.6180 -0.4786 38 1 2.5313 -7.9088 -0.2561 39 1 0.9820 -5.8781 1.3962 40 1 1.1697 -7.5778 1.8904 41 1 3.7183 -7.1925 1.5068 42 1 2.9802 -6.4631 2.9561 43 1 7.0062 -5.3939 -0.6877 44 1 6.1793 -9.8950 2.0460 45 1 7.5338 -9.1117 2.9034 46 1 7.5168 -10.2352 0.0657 47 1 8.5216 -10.7625 1.4360 48 1 9.3498 -7.1353 -0.3632 49 1 8.3427 -8.3088 -1.2510 50 1 1.5255 -4.3608 1.9590 51 1 2.8513 -3.1724 1.9382 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088325282.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:35 Heat of formation + Delta-G solvation = 1.288925 kcal Electronic energy + Delta-G solvation = -32340.235227 eV Core-core repulsion = 28241.444339 eV Total energy + Delta-G solvation = -4098.790888 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.02353 -40.03773 -38.25434 -37.38107 -35.08062 -33.96597 -32.72379 -32.21499 -31.66676 -29.77463 -29.24284 -27.64145 -26.52811 -25.26658 -24.20603 -23.53019 -22.86619 -21.43849 -20.94787 -19.94780 -19.54866 -19.09456 -17.54133 -17.02996 -16.78187 -16.18033 -16.05446 -15.92781 -15.31644 -15.06336 -14.71439 -14.50326 -14.39123 -14.08655 -13.70910 -13.62443 -13.60491 -13.29132 -13.17522 -12.83601 -12.77314 -12.57584 -12.40171 -12.22280 -11.83103 -11.65447 -11.49002 -11.21597 -11.09260 -11.00032 -10.80342 -10.71831 -10.48138 -10.27213 -10.13875 -10.11419 -9.94476 -9.58510 -9.51952 -9.02134 -8.94158 -8.34493 -8.07196 -6.90563 -5.70234 -2.98800 1.45764 2.42598 2.75349 3.10376 3.50063 3.52379 3.54903 3.55305 3.58732 4.30424 4.43768 4.50741 4.61685 4.68643 4.80436 4.82116 4.84315 4.92692 5.00087 5.15334 5.18432 5.19665 5.22700 5.28387 5.31247 5.47637 5.52512 5.59979 5.62249 5.68179 5.72057 5.77386 5.81814 5.93408 5.99371 6.02256 6.08878 6.15407 6.35015 6.41837 6.46786 6.55474 6.65169 6.67533 6.75613 6.86401 6.88019 7.14129 7.18716 7.61572 7.87311 8.38867 8.49258 9.60478 10.14674 10.50244 11.52314 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015299 B = 0.002984 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.702552 B = 9379.839943 C =10531.445178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.233 4.233 8 H 0.075 0.925 9 N -0.719 5.719 10 C 0.165 3.835 11 H 0.063 0.937 12 C -0.130 4.130 13 C -0.116 4.116 14 C -0.112 4.112 15 C -0.149 4.149 16 C 0.088 3.912 17 N -0.601 5.601 18 C 0.580 3.420 19 O -0.509 6.509 20 C -0.039 4.039 21 C -0.096 4.096 22 C -0.217 4.217 23 C 0.039 3.961 24 N -0.527 5.527 25 H 0.419 0.581 26 C -0.085 4.085 27 C 0.069 3.931 28 O -0.381 6.381 29 C 0.136 3.864 30 C 0.100 3.900 31 H 0.254 0.746 32 H 0.383 0.617 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.094 0.906 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.060 0.940 43 H 0.149 0.851 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.056 0.944 47 H 0.100 0.900 48 H 0.103 0.897 49 H 0.062 0.938 50 H 0.073 0.927 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.289 -25.853 3.967 28.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.364 4.364 8 H 0.093 0.907 9 N -0.359 5.359 10 C 0.054 3.946 11 H 0.081 0.919 12 C -0.168 4.168 13 C -0.155 4.155 14 C -0.150 4.150 15 C -0.187 4.187 16 C -0.037 4.037 17 N -0.335 5.335 18 C 0.367 3.633 19 O -0.383 6.383 20 C -0.152 4.152 21 C -0.122 4.122 22 C -0.224 4.224 23 C -0.079 4.079 24 N -0.127 5.127 25 H 0.261 0.739 26 C -0.123 4.123 27 C -0.008 4.008 28 O -0.299 6.299 29 C 0.060 3.940 30 C -0.024 4.024 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.112 0.888 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.078 0.922 43 H 0.167 0.833 44 H 0.103 0.897 45 H 0.105 0.895 46 H 0.075 0.925 47 H 0.118 0.882 48 H 0.121 0.879 49 H 0.080 0.920 50 H 0.091 0.909 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.605 -25.056 3.936 27.491 hybrid contribution -0.660 0.835 0.453 1.156 sum 9.945 -24.221 4.389 26.549 Atomic orbital electron populations 1.69654 1.05072 1.25651 1.58215 1.24725 0.95483 0.97648 1.03135 0.86268 0.78481 0.83468 0.78037 1.21217 1.21848 1.21268 1.19324 0.91332 0.83847 1.41944 0.90737 1.42387 1.05639 0.99727 1.88147 1.20698 0.95197 0.86002 0.92715 0.91914 1.22089 0.98340 0.95289 1.01064 1.21662 1.00807 0.94548 0.98449 1.21711 1.01021 0.97702 0.94558 1.22251 0.96593 1.03129 0.96686 1.21905 0.97871 0.85571 0.98316 1.47880 1.11490 1.10691 1.63413 1.17048 0.80847 0.86746 0.78659 1.90927 1.77797 1.22563 1.47029 1.20660 1.02563 0.90517 1.01442 1.20799 0.93764 0.97218 1.00429 1.19880 1.01531 0.98094 1.02858 1.20227 0.91445 0.95860 1.00395 1.42429 1.23134 1.16524 1.30645 0.73872 1.20989 1.00052 0.91043 1.00262 1.22520 0.89847 0.91301 0.97150 1.88017 1.34971 1.38404 1.68511 1.21053 0.92814 0.88693 0.91468 1.22690 0.90090 0.87756 1.01861 0.93613 0.78327 0.91947 0.91691 0.92785 0.91904 0.92120 0.92697 0.88827 0.91242 0.90076 0.92157 0.83309 0.89738 0.89460 0.92524 0.88159 0.87923 0.92035 0.90857 0.90402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.66 13.06 55.49 0.72 -27.94 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 23.44 29.55 -169.99 -5.02 18.41 16 4 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 5 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 6 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 7 C -0.23 -6.73 9.90 -15.06 -0.15 -6.88 16 8 H 0.07 2.20 7.83 -52.48 -0.41 1.79 16 9 N -0.72 -18.27 5.13 -53.35 -0.27 -18.54 16 10 C 0.16 3.37 2.39 -67.85 -0.16 3.21 16 11 H 0.06 1.47 6.17 -51.93 -0.32 1.15 16 12 C -0.13 -2.15 4.97 -26.60 -0.13 -2.28 16 13 C -0.12 -1.63 5.40 -26.51 -0.14 -1.77 16 14 C -0.11 -1.20 5.75 -26.29 -0.15 -1.35 16 15 C -0.15 -1.49 5.45 -26.77 -0.15 -1.63 16 16 C 0.09 0.90 4.74 -4.64 -0.02 0.88 16 17 N -0.60 -8.86 1.69 -176.16 -0.30 -9.16 16 18 C 0.58 9.81 6.08 -12.85 -0.08 9.73 16 19 O -0.51 -11.04 15.76 5.20 0.08 -10.96 16 20 C -0.04 -0.54 6.40 -81.75 -0.52 -1.07 16 21 C -0.10 -1.30 10.72 -39.35 -0.42 -1.72 16 22 C -0.22 -2.45 6.02 -105.01 -0.63 -3.08 16 23 C 0.04 0.39 7.14 -81.83 -0.58 -0.20 16 24 N -0.53 -5.38 4.74 -5.43 -0.03 -5.41 16 25 H 0.42 3.26 6.24 -40.82 -0.25 3.01 16 26 C -0.09 -0.55 6.56 -27.41 -0.18 -0.73 16 27 C 0.07 0.45 6.78 37.44 0.25 0.70 16 28 O -0.38 -3.64 10.75 -35.23 -0.38 -4.02 16 29 C 0.14 1.27 7.25 36.06 0.26 1.53 16 30 C 0.10 1.80 4.76 -4.14 -0.02 1.78 16 31 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 32 H 0.38 10.16 7.80 -40.82 -0.32 9.84 16 33 H 0.06 0.94 5.47 -51.93 -0.28 0.66 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.99 5.38 -51.93 -0.28 0.71 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.54 7.85 -51.93 -0.41 0.13 16 39 H 0.09 1.12 3.35 -51.93 -0.17 0.94 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.73 3.99 -51.93 -0.21 0.53 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.15 1.99 8.06 -52.48 -0.42 1.57 16 44 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 45 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.33 8.09 -51.93 -0.42 -0.09 16 47 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 49 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.07 1.19 6.07 -51.93 -0.32 0.87 16 51 H 0.08 1.68 8.06 -51.93 -0.42 1.26 16 LS Contribution 381.88 15.07 5.75 5.75 Total: -1.00 -34.69 381.88 -9.96 -44.65 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -7.60 Total: 10.61 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -2.93 Total: -3.40 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: 0.13 Total: -61.05 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.30 Total: -14.98 kcal Atomic # 14 Polarization: 23.44 SS G_CDS: -5.02 Total: 18.41 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.69 -9.96 -44.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088325282.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.934 kcal (2) G-P(sol) polarization free energy of solvation -34.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds