Wall clock time and date at job start Wed Apr 1 2020 06:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99971 * 2 1 4 4 H 1.48508 * 109.46936 * 0.02562 * 3 2 1 5 5 H 1.48493 * 109.47261 * 119.99801 * 3 2 1 6 6 H 1.48501 * 109.47242 * 240.00640 * 3 2 1 7 7 C 1.38811 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99893 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00264 * 359.97438 * 7 2 1 10 10 C 1.47072 * 136.05621 * 359.63656 * 9 7 2 11 11 C 1.53760 * 87.88766 * 152.96082 * 10 9 7 12 12 N 1.46502 * 114.08516 * 139.77612 * 11 10 9 13 13 C 1.46761 * 124.34573 * 146.55909 * 12 11 10 14 14 C 1.54484 * 105.47527 * 197.01757 * 13 12 11 15 15 H 1.09003 * 110.96585 * 92.70244 * 14 13 12 16 16 N 1.46488 * 110.97143 * 216.43015 * 14 13 12 17 17 C 1.34776 * 120.00231 * 205.00089 * 16 14 13 18 18 O 1.21288 * 119.99687 * 354.97579 * 17 16 14 19 19 C 1.50699 * 120.00592 * 174.97913 * 17 16 14 20 20 C 1.53000 * 109.47527 * 145.15694 * 19 17 16 21 21 C 1.53001 * 117.49518 * 248.62252 * 20 19 17 22 22 C 1.53002 * 117.49676 * 179.97438 * 20 19 17 23 23 C 1.53001 * 109.46804 * 265.15816 * 19 17 16 24 24 C 1.53007 * 117.49667 * 130.61851 * 23 19 17 25 25 C 1.53003 * 117.49829 * 61.99803 * 23 19 17 26 26 C 1.54627 * 101.76384 * 334.58997 * 14 13 12 27 27 C 1.34418 * 124.35259 * 326.26719 * 12 11 10 28 28 O 1.21279 * 124.94197 * 359.56584 * 27 12 11 29 29 C 1.47067 * 136.05884 * 180.02562 * 9 7 2 30 30 H 0.96993 * 120.00096 * 359.97438 * 1 2 3 31 31 H 1.09006 * 113.46313 * 267.69135 * 10 9 7 32 32 H 1.08992 * 113.46575 * 38.13059 * 10 9 7 33 33 H 1.08994 * 114.39080 * 272.67654 * 11 10 9 34 34 H 1.09000 * 110.24796 * 316.02195 * 13 12 11 35 35 H 1.08997 * 110.24727 * 78.02017 * 13 12 11 36 36 H 0.97003 * 120.00258 * 25.00153 * 16 14 13 37 37 H 1.09006 * 109.46826 * 25.15389 * 19 17 16 38 38 H 1.09000 * 115.54602 * 34.33035 * 20 19 17 39 39 H 1.08995 * 117.50289 * 359.97438 * 21 20 19 40 40 H 1.09000 * 117.49413 * 145.02527 * 21 20 19 41 41 H 1.08997 * 117.49507 * 214.97440 * 22 20 19 42 42 H 1.08996 * 117.50001 * 0.02562 * 22 20 19 43 43 H 1.08996 * 115.55218 * 276.32172 * 23 19 17 44 44 H 1.08995 * 117.50301 * 359.97438 * 24 23 19 45 45 H 1.08996 * 117.49895 * 145.02413 * 24 23 19 46 46 H 1.09001 * 117.49651 * 214.97863 * 25 23 19 47 47 H 1.08996 * 117.50246 * 359.97438 * 25 23 19 48 48 H 1.09001 * 110.49242 * 143.47357 * 26 14 13 49 49 H 1.09005 * 110.48424 * 265.98778 * 26 14 13 50 50 H 1.08995 * 113.47011 * 321.86578 * 29 9 7 51 51 H 1.09001 * 113.46518 * 92.24812 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1038 1.6965 -1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.0877 -2.7949 0.0064 11 6 0.3413 -4.0920 -0.6991 12 7 -0.3503 -5.2908 -0.2185 13 6 -0.6959 -6.4413 -1.0615 14 6 -1.7616 -7.2288 -0.2675 15 1 -2.7673 -6.9142 -0.5464 16 7 -1.5956 -8.6720 -0.4559 17 6 -2.6488 -9.4979 -0.2977 18 8 -3.7112 -9.0586 0.0889 19 6 -2.5066 -10.9672 -0.6012 20 6 -3.3650 -11.7749 0.3743 21 6 -2.6379 -12.6379 1.4075 22 6 -3.3567 -13.2980 0.2285 23 6 -2.9698 -11.2391 -2.0338 24 6 -2.0422 -12.0597 -2.9324 25 6 -2.2008 -10.5561 -3.1666 26 6 -1.4373 -6.8189 1.1878 27 6 -0.7449 -5.4806 1.0524 28 8 -0.5732 -4.6925 1.9581 29 6 1.6800 -3.8154 -0.0005 30 1 -0.4850 0.8400 0.0004 31 1 -0.4877 -2.9570 1.0073 32 1 -0.7259 -2.1571 -0.6050 33 1 0.3810 -4.0213 -1.7860 34 1 -1.1078 -6.1023 -2.0120 35 1 0.1836 -7.0625 -1.2309 36 1 -0.7275 -9.0333 -0.6945 37 1 -1.4622 -11.2607 -0.4951 38 1 -4.2994 -11.3038 0.6795 39 1 -1.5481 -12.6305 1.3920 40 1 -3.0939 -12.7346 2.3928 41 1 -4.2853 -13.8287 0.4385 42 1 -2.7394 -13.7245 -0.5621 43 1 -4.0438 -11.3723 -2.1634 44 1 -1.1019 -12.4055 -2.5030 45 1 -2.5060 -12.7330 -3.6533 46 1 -2.7689 -10.2401 -4.0415 47 1 -1.3652 -9.9126 -2.8912 48 1 -2.3536 -6.7203 1.7697 49 1 -0.7698 -7.5467 1.6493 50 1 2.5478 -4.0472 -0.6179 51 1 1.7466 -4.2461 0.9986 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094803357.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:12 Heat of formation + Delta-G solvation = 53.052633 kcal Electronic energy + Delta-G solvation = -30667.553987 eV Core-core repulsion = 26571.007742 eV Total energy + Delta-G solvation = -4096.546245 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.92949 -40.12541 -38.18803 -37.33412 -36.65734 -36.33811 -34.12868 -32.22278 -30.77509 -29.44983 -27.57679 -27.00430 -24.51868 -23.60316 -23.15423 -22.73923 -22.41787 -21.83567 -21.19488 -20.55131 -20.00436 -18.42191 -17.78505 -16.93958 -16.74615 -16.40117 -16.12126 -15.63945 -15.31700 -15.14328 -14.90019 -14.57548 -14.22811 -14.08554 -13.91069 -13.65960 -13.49007 -13.46865 -13.14336 -12.46136 -12.28445 -12.04468 -12.00675 -11.96530 -11.90512 -11.81562 -11.56712 -11.48468 -11.20180 -11.06562 -10.85776 -10.84268 -10.75748 -10.74908 -10.28655 -10.11163 -10.05624 -9.86270 -9.65808 -9.38924 -9.13397 -8.65088 -8.15091 -6.81399 -5.71861 -3.04580 2.29301 2.62566 2.91553 3.24170 3.35598 3.42647 3.43022 3.47258 3.48548 4.03072 4.21026 4.29854 4.34780 4.48855 4.51062 4.51588 4.55467 4.64406 4.73795 4.80549 4.86699 4.88430 5.05368 5.19545 5.25737 5.26784 5.28405 5.35568 5.42613 5.45256 5.51627 5.53303 5.61204 5.65087 5.69039 5.69360 5.73325 5.76565 5.84804 5.91334 6.14655 6.30679 6.46876 6.58105 6.88234 7.13687 7.27900 7.49002 7.58871 7.66381 7.91192 8.01006 8.54850 9.07546 9.73996 10.67920 11.45485 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026001 B = 0.001968 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.608702 B =14227.643526 C =14706.856291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.008 4.008 3 Si 0.915 3.085 4 H -0.289 1.289 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.217 4.217 8 H 0.081 0.919 9 N -0.603 5.603 10 C 0.141 3.859 11 C 0.092 3.908 12 N -0.603 5.603 13 C 0.100 3.900 14 C 0.135 3.865 15 H 0.113 0.887 16 N -0.720 5.720 17 C 0.529 3.471 18 O -0.529 6.529 19 C -0.041 4.041 20 C -0.140 4.140 21 C -0.180 4.180 22 C -0.171 4.171 23 C -0.139 4.139 24 C -0.172 4.172 25 C -0.179 4.179 26 C -0.166 4.166 27 C 0.515 3.485 28 O -0.508 6.508 29 C 0.111 3.889 30 H 0.254 0.746 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.401 0.599 37 H 0.089 0.911 38 H 0.119 0.881 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.113 0.887 44 H 0.095 0.905 45 H 0.097 0.903 46 H 0.098 0.902 47 H 0.096 0.904 48 H 0.104 0.896 49 H 0.102 0.898 50 H 0.038 0.962 51 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.420 -30.736 -6.270 31.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.205 4.205 3 Si 0.745 3.255 4 H -0.215 1.215 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.344 4.344 8 H 0.099 0.901 9 N -0.329 5.329 10 C 0.014 3.986 11 C -0.011 4.011 12 N -0.338 5.338 13 C -0.025 4.025 14 C 0.029 3.971 15 H 0.131 0.869 16 N -0.372 5.372 17 C 0.315 3.685 18 O -0.404 6.404 19 C -0.062 4.062 20 C -0.158 4.158 21 C -0.217 4.217 22 C -0.208 4.208 23 C -0.158 4.158 24 C -0.209 4.209 25 C -0.216 4.216 26 C -0.208 4.208 27 C 0.301 3.699 28 O -0.382 6.382 29 C -0.017 4.017 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.128 0.872 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.236 0.764 37 H 0.107 0.893 38 H 0.137 0.863 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.131 0.869 44 H 0.113 0.887 45 H 0.115 0.885 46 H 0.116 0.884 47 H 0.115 0.885 48 H 0.122 0.878 49 H 0.120 0.880 50 H 0.056 0.944 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.030 -29.505 -5.550 30.622 hybrid contribution 0.965 0.643 -0.070 1.162 sum -5.064 -28.862 -5.621 29.837 Atomic orbital electron populations 1.69831 1.05027 1.25482 1.56034 1.24831 0.95719 0.97583 1.02354 0.86155 0.78419 0.82993 0.77906 1.21523 1.21142 1.21049 1.18846 0.90011 0.81170 1.44421 0.90101 1.45273 1.02865 0.99082 1.85702 1.22734 0.88959 0.87828 0.99035 1.23878 0.94850 0.83487 0.98893 1.48366 1.58400 1.17759 1.09235 1.22201 0.97167 0.88132 0.95022 1.21806 1.00888 0.79914 0.94471 0.86909 1.45998 1.12616 1.06493 1.72096 1.20436 0.83670 0.88096 0.76320 1.90718 1.27578 1.77474 1.44620 1.20401 1.00398 0.91357 0.94093 1.22084 1.01561 0.92278 0.99890 1.23073 0.99495 1.04319 0.94820 1.22937 1.02779 0.94384 1.00695 1.22034 0.98845 1.05802 0.89103 1.23052 1.00965 0.94283 1.02639 1.23036 1.03052 0.95323 1.00174 1.22819 1.03078 0.96716 0.98188 1.20625 0.78873 0.87765 0.82610 1.90769 1.56383 1.48652 1.42417 1.22755 0.94328 0.87227 0.97341 0.93552 0.92033 0.91327 0.87233 0.89613 0.91063 0.76406 0.89308 0.86312 0.88781 0.88600 0.88690 0.88545 0.86876 0.88651 0.88492 0.88387 0.88541 0.87768 0.87961 0.94419 0.94456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.38 11.50 55.49 0.64 -27.75 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.92 22.77 29.55 -169.99 -5.02 17.75 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.22 -6.36 10.74 -15.06 -0.16 -6.52 16 8 H 0.08 2.25 7.83 -52.48 -0.41 1.84 16 9 N -0.60 -16.45 3.78 -184.58 -0.70 -17.15 16 10 C 0.14 3.57 6.82 -8.36 -0.06 3.51 16 11 C 0.09 1.76 5.03 -67.66 -0.34 1.42 16 12 N -0.60 -9.23 3.18 -164.45 -0.52 -9.75 16 13 C 0.10 0.97 7.08 -3.12 -0.02 0.95 16 14 C 0.13 1.29 3.49 -66.30 -0.23 1.06 16 15 H 0.11 1.23 7.62 -51.93 -0.40 0.84 16 16 N -0.72 -5.11 5.12 -52.23 -0.27 -5.38 16 17 C 0.53 4.71 6.52 -10.99 -0.07 4.64 16 18 O -0.53 -6.94 15.71 5.55 0.09 -6.86 16 19 C -0.04 -0.26 2.48 -91.77 -0.23 -0.49 16 20 C -0.14 -0.98 5.01 -90.62 -0.45 -1.43 16 21 C -0.18 -1.06 10.18 -26.70 -0.27 -1.34 16 22 C -0.17 -0.92 9.88 -26.70 -0.26 -1.18 16 23 C -0.14 -0.80 4.77 -90.61 -0.43 -1.23 16 24 C -0.17 -0.73 10.18 -26.73 -0.27 -1.01 16 25 C -0.18 -0.92 9.92 -26.73 -0.27 -1.18 16 26 C -0.17 -2.00 6.59 -26.74 -0.18 -2.18 16 27 C 0.52 8.75 7.49 -10.86 -0.08 8.67 16 28 O -0.51 -11.35 14.46 5.56 0.08 -11.27 16 29 C 0.11 2.44 8.23 -8.49 -0.07 2.37 16 30 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.06 1.72 5.41 -51.93 -0.28 1.44 16 32 H 0.07 1.89 7.11 -51.93 -0.37 1.53 16 33 H 0.11 1.91 8.14 -51.93 -0.42 1.48 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.53 7.80 -51.93 -0.40 0.13 16 36 H 0.40 1.73 8.39 -40.82 -0.34 1.39 16 37 H 0.09 0.40 7.62 -51.93 -0.40 0.00 16 38 H 0.12 1.07 7.42 -51.93 -0.39 0.69 16 39 H 0.09 0.48 8.05 -51.93 -0.42 0.06 16 40 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.11 0.75 8.13 -51.93 -0.42 0.33 16 44 H 0.10 0.33 8.06 -51.93 -0.42 -0.09 16 45 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.10 0.44 8.11 -51.93 -0.42 0.01 16 48 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 49 H 0.10 1.08 8.08 -51.93 -0.42 0.66 16 50 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 51 H 0.04 0.87 7.35 -51.93 -0.38 0.49 16 LS Contribution 413.09 15.07 6.23 6.23 Total: -1.00 -37.08 413.09 -11.38 -48.46 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -8.41 Total: -0.01 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: -3.49 Total: 5.73 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: -0.85 Total: -60.02 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: 0.17 Total: -18.13 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -37.08 -11.38 -48.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094803357.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.514 kcal (2) G-P(sol) polarization free energy of solvation -37.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds