Wall clock time and date at job start Wed Apr 1 2020 06:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99971 * 2 1 4 4 H 1.48508 * 109.46936 * 0.02562 * 3 2 1 5 5 H 1.48493 * 109.47261 * 119.99801 * 3 2 1 6 6 H 1.48501 * 109.47242 * 240.00640 * 3 2 1 7 7 C 1.38811 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99893 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00264 * 359.97438 * 7 2 1 10 10 C 1.47072 * 136.05621 * 359.63656 * 9 7 2 11 11 C 1.53760 * 87.88766 * 152.96082 * 10 9 7 12 12 N 1.46502 * 114.08516 * 139.77612 * 11 10 9 13 13 C 1.46761 * 124.34573 * 146.55909 * 12 11 10 14 14 C 1.54484 * 105.47527 * 197.01757 * 13 12 11 15 15 H 1.09003 * 110.96585 * 92.70244 * 14 13 12 16 16 N 1.46488 * 110.97143 * 216.43015 * 14 13 12 17 17 C 1.34776 * 120.00231 * 205.00089 * 16 14 13 18 18 O 1.21288 * 119.99687 * 354.97579 * 17 16 14 19 19 C 1.50699 * 120.00592 * 174.97913 * 17 16 14 20 20 C 1.53000 * 109.47527 * 145.15694 * 19 17 16 21 21 C 1.53001 * 117.49518 * 248.62252 * 20 19 17 22 22 C 1.53002 * 117.49676 * 179.97438 * 20 19 17 23 23 C 1.53001 * 109.46804 * 265.15816 * 19 17 16 24 24 C 1.53007 * 117.49667 * 130.61851 * 23 19 17 25 25 C 1.53003 * 117.49829 * 61.99803 * 23 19 17 26 26 C 1.54627 * 101.76384 * 334.58997 * 14 13 12 27 27 C 1.34418 * 124.35259 * 326.26719 * 12 11 10 28 28 O 1.21279 * 124.94197 * 359.56584 * 27 12 11 29 29 C 1.47067 * 136.05884 * 180.02562 * 9 7 2 30 30 H 0.96993 * 120.00096 * 359.97438 * 1 2 3 31 31 H 1.09006 * 113.46313 * 267.69135 * 10 9 7 32 32 H 1.08992 * 113.46575 * 38.13059 * 10 9 7 33 33 H 1.08994 * 114.39080 * 272.67654 * 11 10 9 34 34 H 1.09000 * 110.24796 * 316.02195 * 13 12 11 35 35 H 1.08997 * 110.24727 * 78.02017 * 13 12 11 36 36 H 0.97003 * 120.00258 * 25.00153 * 16 14 13 37 37 H 1.09006 * 109.46826 * 25.15389 * 19 17 16 38 38 H 1.09000 * 115.54602 * 34.33035 * 20 19 17 39 39 H 1.08995 * 117.50289 * 359.97438 * 21 20 19 40 40 H 1.09000 * 117.49413 * 145.02527 * 21 20 19 41 41 H 1.08997 * 117.49507 * 214.97440 * 22 20 19 42 42 H 1.08996 * 117.50001 * 0.02562 * 22 20 19 43 43 H 1.08996 * 115.55218 * 276.32172 * 23 19 17 44 44 H 1.08995 * 117.50301 * 359.97438 * 24 23 19 45 45 H 1.08996 * 117.49895 * 145.02413 * 24 23 19 46 46 H 1.09001 * 117.49651 * 214.97863 * 25 23 19 47 47 H 1.08996 * 117.50246 * 359.97438 * 25 23 19 48 48 H 1.09001 * 110.49242 * 143.47357 * 26 14 13 49 49 H 1.09005 * 110.48424 * 265.98778 * 26 14 13 50 50 H 1.08995 * 113.47011 * 321.86578 * 29 9 7 51 51 H 1.09001 * 113.46518 * 92.24812 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1038 1.6965 -1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.0877 -2.7949 0.0064 11 6 0.3413 -4.0920 -0.6991 12 7 -0.3503 -5.2908 -0.2185 13 6 -0.6959 -6.4413 -1.0615 14 6 -1.7616 -7.2288 -0.2675 15 1 -2.7673 -6.9142 -0.5464 16 7 -1.5956 -8.6720 -0.4559 17 6 -2.6488 -9.4979 -0.2977 18 8 -3.7112 -9.0586 0.0889 19 6 -2.5066 -10.9672 -0.6012 20 6 -3.3650 -11.7749 0.3743 21 6 -2.6379 -12.6379 1.4075 22 6 -3.3567 -13.2980 0.2285 23 6 -2.9698 -11.2391 -2.0338 24 6 -2.0422 -12.0597 -2.9324 25 6 -2.2008 -10.5561 -3.1666 26 6 -1.4373 -6.8189 1.1878 27 6 -0.7449 -5.4806 1.0524 28 8 -0.5732 -4.6925 1.9581 29 6 1.6800 -3.8154 -0.0005 30 1 -0.4850 0.8400 0.0004 31 1 -0.4877 -2.9570 1.0073 32 1 -0.7259 -2.1571 -0.6050 33 1 0.3810 -4.0213 -1.7860 34 1 -1.1078 -6.1023 -2.0120 35 1 0.1836 -7.0625 -1.2309 36 1 -0.7275 -9.0333 -0.6945 37 1 -1.4622 -11.2607 -0.4951 38 1 -4.2994 -11.3038 0.6795 39 1 -1.5481 -12.6305 1.3920 40 1 -3.0939 -12.7346 2.3928 41 1 -4.2853 -13.8287 0.4385 42 1 -2.7394 -13.7245 -0.5621 43 1 -4.0438 -11.3723 -2.1634 44 1 -1.1019 -12.4055 -2.5030 45 1 -2.5060 -12.7330 -3.6533 46 1 -2.7689 -10.2401 -4.0415 47 1 -1.3652 -9.9126 -2.8912 48 1 -2.3536 -6.7203 1.7697 49 1 -0.7698 -7.5467 1.6493 50 1 2.5478 -4.0472 -0.6179 51 1 1.7466 -4.2461 0.9986 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094803357.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:01:11 Heat of formation + Delta-G solvation = 27.783511 kcal Electronic energy + Delta-G solvation = -30668.649738 eV Core-core repulsion = 26571.007742 eV Total energy + Delta-G solvation = -4097.641997 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.98702 -41.06285 -39.24619 -38.61336 -37.57476 -37.02808 -35.23693 -34.19470 -31.92395 -30.21847 -29.20774 -28.21126 -26.42210 -25.35811 -23.75235 -23.13307 -23.04294 -22.27866 -22.22925 -21.95716 -20.61158 -19.88157 -18.80059 -18.44500 -17.91959 -17.47185 -16.99196 -16.83909 -16.57176 -16.02946 -15.95264 -15.69267 -15.62490 -15.05422 -14.92777 -14.74819 -14.65260 -14.43896 -14.10291 -14.00246 -13.61237 -13.47888 -13.26720 -12.86662 -12.83165 -12.68921 -12.57456 -12.43580 -12.33576 -12.29813 -12.24053 -12.04422 -11.97379 -11.63183 -11.36468 -11.27192 -11.18735 -11.10022 -10.70258 -10.68925 -10.45124 -10.08956 -9.57353 -8.96293 -7.93959 -5.29669 1.42384 1.48063 1.53910 1.54266 1.62166 1.82529 2.13819 2.47678 2.89400 3.01439 3.25996 3.32819 3.47926 3.53188 3.61237 3.73424 3.78780 3.88995 3.94414 4.01558 4.11331 4.15104 4.23507 4.23842 4.30911 4.42367 4.50616 4.57354 4.60908 4.63382 4.74079 4.79259 4.84420 4.86605 4.91163 4.91619 4.95505 5.10527 5.13418 5.18131 5.21130 5.27398 5.33119 5.35917 5.37365 5.44415 5.46806 5.83402 5.87002 6.23084 6.55881 6.84717 7.19982 7.27733 7.54863 8.55302 9.23642 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026001 B = 0.001968 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.608702 B =14227.643526 C =14706.856291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.072 4.072 3 Si 0.989 3.011 4 H -0.294 1.294 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.233 4.233 8 H 0.090 0.910 9 N -0.635 5.635 10 C 0.133 3.867 11 C 0.133 3.867 12 N -0.601 5.601 13 C 0.101 3.899 14 C 0.149 3.851 15 H 0.100 0.900 16 N -0.701 5.701 17 C 0.527 3.473 18 O -0.577 6.577 19 C -0.030 4.030 20 C -0.157 4.157 21 C -0.180 4.180 22 C -0.159 4.159 23 C -0.153 4.153 24 C -0.156 4.156 25 C -0.184 4.184 26 C -0.153 4.153 27 C 0.504 3.496 28 O -0.573 6.573 29 C 0.114 3.886 30 H 0.249 0.751 31 H 0.028 0.972 32 H 0.035 0.965 33 H 0.140 0.860 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.420 0.580 37 H 0.117 0.883 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.111 0.889 43 H 0.096 0.904 44 H 0.112 0.888 45 H 0.100 0.900 46 H 0.092 0.908 47 H 0.108 0.892 48 H 0.093 0.907 49 H 0.124 0.876 50 H 0.067 0.933 51 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.121 -33.622 -8.433 34.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.265 4.265 3 Si 0.815 3.185 4 H -0.220 1.220 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.361 4.361 8 H 0.108 0.892 9 N -0.361 5.361 10 C 0.007 3.993 11 C 0.029 3.971 12 N -0.335 5.335 13 C -0.021 4.021 14 C 0.042 3.958 15 H 0.118 0.882 16 N -0.354 5.354 17 C 0.315 3.685 18 O -0.455 6.455 19 C -0.051 4.051 20 C -0.176 4.176 21 C -0.217 4.217 22 C -0.195 4.195 23 C -0.172 4.172 24 C -0.192 4.192 25 C -0.221 4.221 26 C -0.194 4.194 27 C 0.292 3.708 28 O -0.452 6.452 29 C -0.012 4.012 30 H 0.058 0.942 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.158 0.842 34 H 0.125 0.875 35 H 0.130 0.870 36 H 0.259 0.741 37 H 0.135 0.865 38 H 0.107 0.893 39 H 0.127 0.873 40 H 0.108 0.892 41 H 0.113 0.887 42 H 0.130 0.870 43 H 0.114 0.886 44 H 0.130 0.870 45 H 0.119 0.881 46 H 0.110 0.890 47 H 0.126 0.874 48 H 0.112 0.888 49 H 0.142 0.858 50 H 0.085 0.915 51 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -3.690 -32.490 -7.768 33.609 hybrid contribution 0.187 1.450 0.651 1.600 sum -3.503 -31.040 -7.116 32.038 Atomic orbital electron populations 1.70063 1.06798 1.25831 1.57642 1.25816 0.96652 1.01415 1.02596 0.85011 0.77024 0.77911 0.78510 1.22036 1.20553 1.19146 1.19339 0.90803 0.82489 1.43450 0.89209 1.45698 1.03907 1.00749 1.85761 1.22587 0.88077 0.91051 0.97613 1.23220 0.92243 0.82282 0.99397 1.48335 1.57334 1.18086 1.09696 1.22546 0.98806 0.86338 0.94435 1.21509 1.00354 0.81405 0.92483 0.88228 1.45781 1.13311 1.05076 1.71233 1.20994 0.83049 0.89276 0.75147 1.90712 1.29594 1.78422 1.46792 1.20367 1.01733 0.88936 0.94040 1.21992 1.01006 0.93372 1.01236 1.23162 1.00277 1.03648 0.94584 1.22993 1.02907 0.92957 1.00690 1.21943 0.98365 1.07736 0.89111 1.23134 1.00871 0.93735 1.01505 1.23127 1.03095 0.96369 0.99480 1.22740 1.02364 0.94154 1.00173 1.21487 0.78276 0.88723 0.82296 1.90739 1.58791 1.51071 1.44568 1.22804 0.96874 0.84264 0.97277 0.94246 0.95417 0.94636 0.84202 0.87471 0.86963 0.74081 0.86489 0.89337 0.87269 0.89171 0.88732 0.87024 0.88619 0.86975 0.88128 0.88958 0.87377 0.88811 0.85755 0.91514 0.96035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.41 11.50 21.65 0.25 -61.17 16 2 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 3 Si 0.99 47.51 29.55 68.60 2.03 49.54 16 4 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 7 C -0.23 -13.81 10.74 84.03 0.90 -12.90 16 8 H 0.09 4.98 7.83 -2.91 -0.02 4.96 16 9 N -0.64 -35.24 3.78 -737.90 -2.79 -38.03 16 10 C 0.13 7.04 6.82 83.27 0.57 7.60 16 11 C 0.13 4.92 5.03 45.56 0.23 5.15 16 12 N -0.60 -17.39 3.18 -792.80 -2.52 -19.91 16 13 C 0.10 1.56 7.08 86.83 0.61 2.17 16 14 C 0.15 2.48 3.49 46.05 0.16 2.64 16 15 H 0.10 2.04 7.62 -2.39 -0.02 2.02 16 16 N -0.70 -7.56 5.12 -437.54 -2.24 -9.80 16 17 C 0.53 8.43 6.52 87.66 0.57 9.00 16 18 O -0.58 -15.13 15.71 -3.05 -0.05 -15.18 16 19 C -0.03 -0.30 2.48 -11.54 -0.03 -0.33 16 20 C -0.16 -2.04 5.01 -10.79 -0.05 -2.09 16 21 C -0.18 -1.79 10.18 30.61 0.31 -1.48 16 22 C -0.16 -1.40 9.88 30.61 0.30 -1.09 16 23 C -0.15 -1.42 4.77 -10.79 -0.05 -1.48 16 24 C -0.16 -0.77 10.18 30.60 0.31 -0.46 16 25 C -0.18 -1.32 9.92 30.60 0.30 -1.01 16 26 C -0.15 -3.51 6.59 30.59 0.20 -3.31 16 27 C 0.50 17.17 7.49 87.90 0.66 17.82 16 28 O -0.57 -26.96 14.46 -3.03 -0.04 -27.01 16 29 C 0.11 4.92 8.23 83.19 0.68 5.60 16 30 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 31 H 0.03 1.67 5.41 -2.38 -0.01 1.66 16 32 H 0.04 2.07 7.11 -2.39 -0.02 2.05 16 33 H 0.14 4.43 8.14 -2.39 -0.02 4.41 16 34 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.11 0.96 7.80 -2.39 -0.02 0.94 16 36 H 0.42 1.46 8.39 -92.71 -0.78 0.68 16 37 H 0.12 0.52 7.62 -2.38 -0.02 0.50 16 38 H 0.09 1.70 7.42 -2.39 -0.02 1.68 16 39 H 0.11 0.75 8.05 -2.39 -0.02 0.73 16 40 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.10 1.22 8.13 -2.39 -0.02 1.20 16 44 H 0.11 0.22 8.06 -2.39 -0.02 0.20 16 45 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.11 0.50 8.11 -2.39 -0.02 0.48 16 48 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 49 H 0.12 2.32 8.08 -2.38 -0.02 2.30 16 50 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 51 H 0.02 1.02 7.35 -2.39 -0.02 1.00 16 Total: -1.00 -88.29 413.09 0.95 -87.34 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 0.16 Total: 12.21 kcal Atomic # 6 Polarization: 15.84 SS G_CDS: 6.15 Total: 21.99 kcal Atomic # 7 Polarization: -121.60 SS G_CDS: -7.30 Total: -128.90 kcal Atomic # 8 Polarization: -42.09 SS G_CDS: -0.09 Total: -42.19 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.54 kcal Total: -88.29 0.95 -87.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094803357.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.123 kcal (2) G-P(sol) polarization free energy of solvation -88.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds