Wall clock time and date at job start Wed Apr 1 2020 06:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86801 * 120.00257 * 2 1 4 4 H 1.48496 * 109.46898 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.46611 * 120.00136 * 3 2 1 6 6 H 1.48490 * 109.47324 * 240.00280 * 3 2 1 7 7 C 1.38952 * 119.99760 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99767 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99501 * 359.97438 * 7 2 1 10 10 C 1.34781 * 119.99180 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00643 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99590 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47047 * 180.02562 * 12 10 9 14 14 C 1.46904 * 111.00005 * 180.02562 * 13 12 10 15 15 H 1.09002 * 109.32130 * 35.35918 * 14 13 12 16 16 C 1.53028 * 109.32462 * 155.00012 * 14 13 12 17 17 C 1.53972 * 108.82631 * 175.67835 * 16 14 13 18 18 H 1.08998 * 112.99485 * 169.00417 * 17 16 14 19 19 C 1.55427 * 106.41498 * 293.82028 * 17 16 14 20 20 C 1.57428 * 99.36759 * 73.92546 * 19 17 16 21 21 H 1.08999 * 112.41784 * 162.48726 * 20 19 17 22 22 C 1.52984 * 109.32551 * 275.89036 * 14 13 12 23 23 N 1.47792 * 104.52040 * 40.23745 * 20 19 17 24 24 C 1.34774 * 125.85220 * 153.60554 * 23 20 19 25 25 O 1.21604 * 120.00647 * 0.04799 * 24 23 20 26 26 C 1.47114 * 119.99498 * 180.02562 * 24 23 20 27 27 C 1.32989 * 119.99549 * 174.03337 * 26 24 23 28 28 C 1.50697 * 120.00406 * 352.94439 * 27 26 24 29 29 C 1.53005 * 117.50172 * 181.83014 * 28 27 26 30 30 C 1.52996 * 117.50112 * 113.16749 * 28 27 26 31 31 C 1.47078 * 108.28473 * 333.62771 * 23 20 19 32 32 H 0.97007 * 119.99436 * 359.97438 * 1 2 3 33 33 H 0.96993 * 120.00863 * 0.02562 * 9 7 2 34 34 H 1.08999 * 109.47381 * 300.00663 * 12 10 9 35 35 H 1.09008 * 109.47185 * 60.00663 * 12 10 9 36 36 H 1.00898 * 111.00289 * 303.95225 * 13 12 10 37 37 H 1.09003 * 109.57984 * 295.48027 * 16 14 13 38 38 H 1.09000 * 109.58126 * 55.74592 * 16 14 13 39 39 H 1.08994 * 111.23711 * 191.15073 * 19 17 16 40 40 H 1.09002 * 111.23783 * 315.60205 * 19 17 16 41 41 H 1.09001 * 109.53011 * 304.53292 * 22 14 13 42 42 H 1.09000 * 109.53419 * 64.75201 * 22 14 13 43 43 H 1.07998 * 119.99819 * 354.02659 * 26 24 23 44 44 H 1.08002 * 119.99580 * 172.94716 * 27 26 24 45 45 H 1.09009 * 115.54889 * 327.49263 * 28 27 26 46 46 H 1.09006 * 117.49322 * 359.97438 * 29 28 27 47 47 H 1.08996 * 117.50290 * 145.01879 * 29 28 27 48 48 H 1.09000 * 117.49804 * 214.97853 * 30 28 27 49 49 H 1.08997 * 117.49726 * 0.02562 * 30 28 27 50 50 H 1.09003 * 109.97495 * 241.74270 * 31 23 20 51 51 H 1.09005 * 109.97815 * 120.47008 * 31 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 1.2833 2.7464 0.0006 5 1 3.1020 1.6962 1.2125 6 1 3.1019 1.6964 -1.2124 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3232 -2.3906 -0.0005 10 6 1.9971 -3.5579 -0.0016 11 8 3.2100 -3.5580 -0.0021 12 6 1.2436 -4.8629 -0.0010 13 7 2.1981 -5.9795 -0.0017 14 6 1.4977 -7.2709 -0.0018 15 1 0.5881 -7.1878 -0.5967 16 6 2.4065 -8.3398 -0.6128 17 6 1.7056 -9.7067 -0.5083 18 1 2.2013 -10.4849 -1.0886 19 6 1.6135 -10.0384 1.0074 20 6 0.4704 -9.0376 1.4197 21 1 0.0183 -9.2947 2.3776 22 6 1.1268 -7.6457 1.4343 23 7 -0.4970 -9.1000 0.3041 24 6 -1.8169 -8.8410 0.3884 25 8 -2.3072 -8.5222 1.4546 26 6 -2.6645 -8.9435 -0.8097 27 6 -3.9830 -8.8049 -0.7051 28 6 -4.6244 -8.7019 0.6546 29 6 -6.1492 -8.5869 0.7096 30 6 -5.2773 -7.3698 1.0287 31 6 0.2278 -9.4937 -0.9136 32 1 -0.4850 0.8401 0.0004 33 1 0.3533 -2.3907 -0.0005 34 1 0.6178 -4.9208 0.8896 35 1 0.6159 -4.9205 -0.8904 36 1 2.8324 -5.9126 -0.7836 37 1 2.5939 -8.1046 -1.6605 38 1 3.3515 -8.3694 -0.0704 39 1 1.3089 -11.0726 1.1675 40 1 2.5528 -9.8224 1.5166 41 1 2.0231 -7.6439 2.0545 42 1 0.4100 -6.9238 1.8258 43 1 -2.2159 -9.1313 -1.7740 44 1 -4.5940 -8.7661 -1.5948 45 1 -4.1330 -9.2625 1.4499 46 1 -6.6882 -8.5853 -0.2378 47 1 -6.6608 -9.0713 1.5413 48 1 -5.2158 -7.0541 2.0702 49 1 -5.2433 -6.5680 0.2911 50 1 0.1568 -8.7036 -1.6611 51 1 -0.1867 -10.4205 -1.3105 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108659050.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:02 Heat of formation + Delta-G solvation = -34.676133 kcal Electronic energy + Delta-G solvation = -31016.456939 eV Core-core repulsion = 26916.106489 eV Total energy + Delta-G solvation = -4100.350450 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.05608 -40.26685 -39.84239 -38.02238 -36.73724 -35.87634 -33.92473 -33.34130 -33.16464 -31.99231 -30.50290 -27.80136 -26.91757 -25.74565 -25.30408 -23.26006 -22.97759 -22.44057 -21.58356 -21.11556 -20.33061 -19.91709 -19.55504 -18.30398 -17.80535 -17.29227 -16.82245 -16.51869 -16.40680 -16.18072 -16.00171 -15.86603 -15.24677 -15.21914 -14.89084 -14.47839 -14.40562 -14.26645 -14.13739 -13.67167 -13.56075 -13.51722 -13.39497 -13.13606 -12.90780 -12.87380 -12.78461 -12.59157 -12.46793 -12.44647 -12.27231 -12.14153 -11.98489 -11.73108 -11.53817 -11.29398 -11.22597 -11.06081 -10.54087 -10.38993 -10.08327 -10.06575 -9.54502 -9.36877 -8.49674 -5.99617 0.37482 1.37665 1.39453 1.51206 1.98563 2.04794 2.26157 2.27497 2.83676 3.06054 3.16531 3.39436 3.42176 3.52645 3.67325 3.87549 3.90810 4.02542 4.05087 4.12974 4.14765 4.21547 4.24573 4.30091 4.34708 4.36819 4.44787 4.50497 4.54217 4.61297 4.64263 4.75842 4.77354 4.84635 4.97570 5.02533 5.08255 5.16879 5.17572 5.21367 5.23363 5.25910 5.29223 5.32671 5.37098 5.45456 5.61077 5.86964 6.07154 6.41964 6.54603 6.61120 7.07495 7.22726 7.49843 8.04336 8.67637 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009105 B = 0.002796 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3074.369398 B =10010.474266 C =12507.196153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.014 4.014 3 Si 0.996 3.004 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.268 1.268 7 C -0.337 4.337 8 H 0.081 0.919 9 N -0.573 5.573 10 C 0.439 3.561 11 O -0.619 6.619 12 C 0.070 3.930 13 N -0.675 5.675 14 C 0.093 3.907 15 H 0.039 0.961 16 C -0.115 4.115 17 C -0.084 4.084 18 H 0.138 0.862 19 C -0.117 4.117 20 C 0.129 3.871 21 H 0.081 0.919 22 C -0.113 4.113 23 N -0.609 5.609 24 C 0.546 3.454 25 O -0.577 6.577 26 C -0.225 4.225 27 C -0.027 4.027 28 C -0.144 4.144 29 C -0.162 4.162 30 C -0.174 4.174 31 C 0.096 3.904 32 H 0.278 0.722 33 H 0.394 0.606 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.348 0.652 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.026 0.974 43 H 0.156 0.844 44 H 0.159 0.841 45 H 0.104 0.896 46 H 0.115 0.885 47 H 0.101 0.899 48 H 0.082 0.918 49 H 0.094 0.906 50 H 0.072 0.928 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.314 -26.216 -5.174 27.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.214 4.214 3 Si 0.819 3.181 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.193 1.193 7 C -0.466 4.466 8 H 0.099 0.901 9 N -0.210 5.210 10 C 0.227 3.773 11 O -0.505 6.505 12 C -0.062 4.062 13 N -0.308 5.308 14 C -0.017 4.017 15 H 0.057 0.943 16 C -0.152 4.152 17 C -0.103 4.103 18 H 0.156 0.844 19 C -0.155 4.155 20 C 0.025 3.975 21 H 0.099 0.901 22 C -0.153 4.153 23 N -0.342 5.342 24 C 0.339 3.661 25 O -0.459 6.459 26 C -0.246 4.246 27 C -0.046 4.046 28 C -0.162 4.162 29 C -0.199 4.199 30 C -0.211 4.211 31 C -0.025 4.025 32 H 0.088 0.912 33 H 0.228 0.772 34 H 0.101 0.899 35 H 0.076 0.924 36 H 0.168 0.832 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.115 0.885 41 H 0.099 0.901 42 H 0.044 0.956 43 H 0.173 0.827 44 H 0.177 0.823 45 H 0.122 0.878 46 H 0.133 0.867 47 H 0.119 0.881 48 H 0.100 0.900 49 H 0.112 0.888 50 H 0.091 0.909 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.888 -25.845 -3.956 27.038 hybrid contribution -0.530 1.472 -0.405 1.616 sum -7.418 -24.372 -4.361 25.847 Atomic orbital electron populations 1.69688 1.06989 1.29467 1.50066 1.26118 0.96566 1.02609 0.96061 0.84946 0.77740 0.76316 0.79078 1.19403 1.19706 1.19347 1.19671 0.92780 0.83905 1.50242 0.90073 1.41952 1.09246 1.04855 1.64908 1.20723 0.88238 0.85934 0.82439 1.90474 1.15503 1.87884 1.56655 1.21457 0.94084 0.88979 1.01706 1.60086 1.18856 1.00529 1.51325 1.21645 0.95784 0.88301 0.95924 0.94268 1.22009 0.98624 0.93317 1.01278 1.22660 0.93566 0.97245 0.96816 0.84389 1.23437 0.97555 0.98605 0.95865 1.22550 0.88930 0.95186 0.90796 0.90064 1.22044 0.99809 0.96147 0.97277 1.48579 1.06423 1.67504 1.11676 1.18867 0.81169 0.76606 0.89467 1.90753 1.73138 1.49767 1.32230 1.22735 0.94613 1.09302 0.97923 1.23431 0.94819 0.89071 0.97304 1.21496 0.95003 1.02445 0.97214 1.23182 0.91777 1.00588 1.04305 1.22827 1.04540 0.91730 1.01994 1.22454 0.92344 1.01128 0.86608 0.91226 0.77237 0.89903 0.92423 0.83230 0.90463 0.90252 0.89304 0.88517 0.90091 0.95556 0.82661 0.82318 0.87781 0.86678 0.88082 0.89972 0.88782 0.90948 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.34 13.05 21.66 0.28 -51.06 16 2 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 3 Si 1.00 43.81 29.55 68.60 2.03 45.83 16 4 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.34 -19.73 9.68 84.04 0.81 -18.92 16 8 H 0.08 5.01 7.16 -2.91 -0.02 4.99 16 9 N -0.57 -30.97 5.29 -306.98 -1.62 -32.60 16 10 C 0.44 22.10 7.82 87.66 0.69 22.79 16 11 O -0.62 -35.32 15.78 -3.06 -0.05 -35.36 16 12 C 0.07 2.71 5.96 85.56 0.51 3.22 16 13 N -0.68 -22.38 5.93 -495.53 -2.94 -25.31 16 14 C 0.09 2.28 2.12 44.92 0.10 2.37 16 15 H 0.04 1.02 5.61 -2.39 -0.01 1.00 16 16 C -0.11 -1.87 4.73 30.93 0.15 -1.72 16 17 C -0.08 -0.89 4.27 -9.05 -0.04 -0.93 16 18 H 0.14 0.65 8.14 -2.39 -0.02 0.63 16 19 C -0.12 -1.50 6.31 32.99 0.21 -1.29 16 20 C 0.13 2.73 4.00 46.61 0.19 2.92 16 21 H 0.08 1.97 8.02 -2.39 -0.02 1.95 16 22 C -0.11 -2.97 5.20 30.89 0.16 -2.81 16 23 N -0.61 -12.42 2.38 -783.99 -1.87 -14.29 16 24 C 0.55 13.70 7.71 86.57 0.67 14.37 16 25 O -0.58 -19.06 13.57 -4.04 -0.05 -19.12 16 26 C -0.23 -4.08 9.54 23.43 0.22 -3.85 16 27 C -0.03 -0.46 9.74 24.52 0.24 -0.22 16 28 C -0.14 -3.07 4.35 -11.54 -0.05 -3.12 16 29 C -0.16 -2.60 10.24 30.62 0.31 -2.28 16 30 C -0.17 -3.79 10.24 30.62 0.31 -3.47 16 31 C 0.10 1.22 4.83 86.85 0.42 1.64 16 32 H 0.28 14.50 8.31 -92.70 -0.77 13.73 16 33 H 0.39 20.58 7.90 -92.71 -0.73 19.84 16 34 H 0.08 3.21 7.46 -2.39 -0.02 3.19 16 35 H 0.06 2.01 8.05 -2.38 -0.02 1.99 16 36 H 0.35 11.55 8.05 -89.70 -0.72 10.83 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.08 1.36 7.98 -2.39 -0.02 1.34 16 39 H 0.09 0.90 8.14 -2.39 -0.02 0.89 16 40 H 0.10 1.18 7.75 -2.39 -0.02 1.16 16 41 H 0.08 2.13 8.00 -2.39 -0.02 2.11 16 42 H 0.03 0.86 7.51 -2.39 -0.02 0.84 16 43 H 0.16 1.81 7.41 -2.91 -0.02 1.78 16 44 H 0.16 1.60 8.06 -2.91 -0.02 1.57 16 45 H 0.10 2.82 6.23 -2.38 -0.01 2.80 16 46 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 47 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 49 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 50 H 0.07 0.94 6.83 -2.39 -0.02 0.92 16 51 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 Total: -1.00 -76.40 404.57 0.64 -75.76 By element: Atomic # 1 Polarization: 48.24 SS G_CDS: -0.50 Total: 47.74 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 5.36 Total: 8.40 kcal Atomic # 7 Polarization: -117.11 SS G_CDS: -6.15 Total: -123.25 kcal Atomic # 8 Polarization: -54.38 SS G_CDS: -0.10 Total: -54.48 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -76.40 0.64 -75.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108659050.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.087 kcal (2) G-P(sol) polarization free energy of solvation -76.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds