Wall clock time and date at job start Wed Apr 1 2020 06:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99919 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00147 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00098 * 3 2 1 6 6 H 1.48504 * 109.46913 * 329.99897 * 3 2 1 7 7 C 1.38955 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99776 * 0.02562 * 7 2 1 9 9 N 1.37090 * 119.99992 * 179.97438 * 7 2 1 10 10 C 1.34784 * 119.99714 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00111 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99627 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.47177 * 179.97438 * 12 10 9 14 14 C 1.46893 * 111.00304 * 179.97438 * 13 12 10 15 15 H 1.09004 * 109.32447 * 35.36003 * 14 13 12 16 16 C 1.53032 * 109.32593 * 154.99831 * 14 13 12 17 17 C 1.53975 * 108.82821 * 175.67805 * 16 14 13 18 18 H 1.08998 * 112.99050 * 169.00305 * 17 16 14 19 19 C 1.55421 * 106.41344 * 293.82243 * 17 16 14 20 20 C 1.57419 * 99.37250 * 73.93005 * 19 17 16 21 21 H 1.09000 * 112.42582 * 162.48987 * 20 19 17 22 22 C 1.52988 * 109.32803 * 275.88949 * 14 13 12 23 23 N 1.47786 * 104.52095 * 40.23068 * 20 19 17 24 24 C 1.34779 * 125.85485 * 153.61525 * 23 20 19 25 25 O 1.21612 * 120.00231 * 0.04388 * 24 23 20 26 26 C 1.47103 * 119.99736 * 180.02562 * 24 23 20 27 27 C 1.32997 * 119.99775 * 179.97438 * 26 24 23 28 28 C 1.50700 * 120.00118 * 179.97438 * 27 26 24 29 29 C 1.52998 * 117.50219 * 188.74825 * 28 27 26 30 30 C 1.53006 * 117.49828 * 120.08548 * 28 27 26 31 31 C 1.47082 * 108.29057 * 333.63064 * 23 20 19 32 32 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 33 33 H 0.96999 * 120.00238 * 359.97438 * 9 7 2 34 34 H 1.09005 * 109.47076 * 299.99278 * 12 10 9 35 35 H 1.09002 * 109.47753 * 59.99519 * 12 10 9 36 36 H 1.00899 * 110.99897 * 303.95678 * 13 12 10 37 37 H 1.09003 * 109.58073 * 295.48332 * 16 14 13 38 38 H 1.09000 * 109.57814 * 55.74648 * 16 14 13 39 39 H 1.09006 * 111.23250 * 191.15530 * 19 17 16 40 40 H 1.08998 * 111.24039 * 315.59927 * 19 17 16 41 41 H 1.09000 * 109.53292 * 304.52992 * 22 14 13 42 42 H 1.08996 * 109.53505 * 64.75537 * 22 14 13 43 43 H 1.07996 * 120.00451 * 359.97438 * 26 24 23 44 44 H 1.08000 * 120.00037 * 0.02562 * 27 26 24 45 45 H 1.09001 * 115.55008 * 334.42739 * 28 27 26 46 46 H 1.08998 * 117.49664 * 0.02562 * 29 28 27 47 47 H 1.08995 * 117.50005 * 145.02522 * 29 28 27 48 48 H 1.08997 * 117.50036 * 214.98341 * 30 28 27 49 49 H 1.08994 * 117.49350 * 0.02562 * 30 28 27 50 50 H 1.08998 * 109.97993 * 241.75213 * 31 23 20 51 51 H 1.08997 * 109.97606 * 120.46010 * 31 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 1.4001 5 1 3.5457 1.4402 -0.7001 6 1 1.4455 2.6527 -0.7001 7 6 2.0090 -1.2034 0.0005 8 1 1.4690 -2.1387 0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3706 0.0000 11 8 3.4473 -3.4210 0.0009 12 6 5.5607 -2.3705 0.0000 13 7 6.0505 -3.7555 0.0006 14 6 7.5189 -3.7946 0.0000 15 1 7.9021 -2.9653 0.5947 16 6 7.9905 -5.1161 0.6110 17 6 9.5248 -5.1926 0.5057 18 1 9.9510 -6.0110 1.0860 19 6 9.8573 -5.2788 -1.0100 20 6 9.5621 -3.7885 -1.4224 21 1 10.0104 -3.5256 -2.3805 22 6 8.0284 -3.6609 -1.4363 23 7 10.1003 -2.9820 -0.3071 24 6 10.5360 -1.7093 -0.3916 25 8 10.5046 -1.1254 -1.4579 26 6 11.0490 -1.0265 0.8061 27 6 11.4794 0.2291 0.7226 28 6 12.0044 0.9289 1.9497 29 6 12.2918 2.4276 1.8397 30 6 13.4499 1.4293 1.9134 31 6 10.0794 -3.8063 0.9108 32 1 -0.4850 0.8401 0.0004 33 1 3.8649 -0.3633 -0.0011 34 1 5.9240 -1.8567 -0.8901 35 1 5.9242 -1.8566 0.8899 36 1 5.6750 -4.2714 0.7822 37 1 7.6936 -5.1607 1.6588 38 1 7.5433 -5.9493 0.0688 39 1 10.9052 -5.5322 -1.1705 40 1 9.2004 -5.9842 -1.5189 41 1 7.5785 -4.4363 -2.0563 42 1 7.7616 -2.6793 -1.8278 43 1 11.0763 -1.5448 1.7532 44 1 11.4518 0.7476 -0.2244 45 1 11.6242 0.5578 2.9014 46 1 12.1006 2.9076 0.8800 47 1 12.1008 3.0425 2.7192 48 1 14.0203 1.3878 2.8413 49 1 14.0208 1.2527 1.0019 50 1 9.4308 -3.3497 1.6585 51 1 11.0893 -3.9107 1.3072 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108659051.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:05 Heat of formation + Delta-G solvation = -38.311376 kcal Electronic energy + Delta-G solvation = -30698.048653 eV Core-core repulsion = 26597.540567 eV Total energy + Delta-G solvation = -4100.508086 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.07590 -40.36652 -39.71407 -38.38114 -36.79453 -35.93066 -33.98673 -33.77306 -33.25620 -32.01965 -30.57378 -27.90255 -26.96051 -25.70427 -25.42110 -23.26711 -22.88885 -22.42647 -21.40657 -21.12323 -20.44099 -20.09262 -19.78695 -18.48663 -17.85464 -17.28228 -17.00870 -16.75233 -16.47450 -16.30965 -15.93957 -15.75543 -15.37414 -15.09018 -15.01667 -14.59135 -14.49040 -14.46057 -14.02783 -13.99289 -13.63242 -13.52740 -13.42631 -13.16245 -12.98756 -12.90780 -12.77504 -12.60513 -12.46852 -12.40219 -12.25430 -12.13544 -12.03093 -11.75088 -11.56486 -11.40454 -11.24004 -11.06643 -10.92750 -10.48081 -10.29613 -10.16408 -9.62385 -9.37754 -8.45605 -6.06232 0.27976 1.26888 1.29923 1.39450 1.87959 1.95860 2.18061 2.21511 2.63831 3.00165 3.10223 3.28525 3.33536 3.50394 3.59843 3.88805 3.92316 3.97557 3.99257 4.05945 4.07289 4.15305 4.18189 4.20537 4.28501 4.34261 4.39801 4.40305 4.52535 4.59503 4.63285 4.75876 4.77518 4.83413 4.98676 5.01774 5.07895 5.09671 5.16502 5.19411 5.22820 5.24431 5.27279 5.31960 5.41863 5.48588 5.52401 5.87130 6.02452 6.40077 6.52776 6.54724 6.82520 7.11657 7.33762 7.88761 8.71887 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007890 B = 0.002981 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3548.070919 B = 9391.365856 C =12216.185670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.961 3.039 4 H -0.253 1.253 5 H -0.241 1.241 6 H -0.272 1.272 7 C -0.329 4.329 8 H 0.059 0.941 9 N -0.592 5.592 10 C 0.451 3.549 11 O -0.609 6.609 12 C 0.066 3.934 13 N -0.679 5.679 14 C 0.092 3.908 15 H 0.044 0.956 16 C -0.115 4.115 17 C -0.084 4.084 18 H 0.138 0.862 19 C -0.117 4.117 20 C 0.127 3.873 21 H 0.082 0.918 22 C -0.115 4.115 23 N -0.605 5.605 24 C 0.552 3.448 25 O -0.598 6.598 26 C -0.216 4.216 27 C -0.030 4.030 28 C -0.148 4.148 29 C -0.175 4.175 30 C -0.157 4.157 31 C 0.095 3.905 32 H 0.280 0.720 33 H 0.387 0.613 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.349 0.651 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.030 0.970 43 H 0.154 0.846 44 H 0.106 0.894 45 H 0.130 0.870 46 H 0.092 0.908 47 H 0.113 0.887 48 H 0.118 0.882 49 H 0.094 0.906 50 H 0.076 0.924 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.039 -3.192 7.321 34.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.210 4.210 3 Si 0.781 3.219 4 H -0.177 1.177 5 H -0.165 1.165 6 H -0.196 1.196 7 C -0.458 4.458 8 H 0.077 0.923 9 N -0.233 5.233 10 C 0.239 3.761 11 O -0.493 6.493 12 C -0.067 4.067 13 N -0.312 5.312 14 C -0.017 4.017 15 H 0.061 0.939 16 C -0.153 4.153 17 C -0.103 4.103 18 H 0.156 0.844 19 C -0.155 4.155 20 C 0.023 3.977 21 H 0.100 0.900 22 C -0.154 4.154 23 N -0.337 5.337 24 C 0.344 3.656 25 O -0.481 6.481 26 C -0.237 4.237 27 C -0.050 4.050 28 C -0.166 4.166 29 C -0.212 4.212 30 C -0.194 4.194 31 C -0.026 4.026 32 H 0.090 0.910 33 H 0.223 0.777 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.169 0.831 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.116 0.884 41 H 0.100 0.900 42 H 0.049 0.951 43 H 0.172 0.828 44 H 0.124 0.876 45 H 0.148 0.852 46 H 0.111 0.889 47 H 0.131 0.869 48 H 0.136 0.864 49 H 0.113 0.887 50 H 0.095 0.905 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 33.363 -3.501 6.111 34.098 hybrid contribution -0.584 1.500 0.319 1.641 sum 32.779 -2.001 6.430 33.464 Atomic orbital electron populations 1.69790 1.07945 1.29281 1.50086 1.26051 0.96454 1.02468 0.96055 0.85423 0.79224 0.77175 0.80094 1.17725 1.16481 1.19644 1.19021 0.81275 0.95073 1.50437 0.92314 1.42071 1.06015 1.07517 1.67702 1.20820 0.90622 0.83400 0.81292 1.90531 1.71198 1.32544 1.55042 1.21566 0.89971 0.92487 1.02664 1.60047 1.08238 1.11307 1.51589 1.21655 0.85413 0.98702 0.95921 0.93861 1.22014 0.95906 0.96014 1.01375 1.22662 0.94125 0.96734 0.96759 0.84381 1.23445 1.03148 0.93002 0.95925 1.22602 0.92376 0.91991 0.90713 0.90012 1.22060 0.94757 1.01200 0.97388 1.48525 1.61384 1.11794 1.11963 1.18766 0.77051 0.80496 0.89239 1.90767 1.58863 1.66105 1.32397 1.22531 1.06367 0.96881 0.97889 1.23174 0.89927 0.93947 0.97939 1.21372 1.00746 0.97290 0.97200 1.23129 1.02827 0.90978 1.04247 1.23082 0.89665 1.02069 1.04554 1.22499 1.02734 0.90927 0.86454 0.91022 0.77738 0.88960 0.91245 0.83104 0.90344 0.90325 0.89328 0.88442 0.89967 0.95129 0.82824 0.87578 0.85224 0.88915 0.86894 0.86361 0.88726 0.90544 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.91 13.96 21.66 0.30 -56.61 16 2 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 3 Si 0.96 40.42 27.74 68.60 1.90 42.32 16 4 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 5 H -0.24 -8.98 6.52 99.48 0.65 -8.33 16 6 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.33 -19.81 10.16 84.04 0.85 -18.96 16 8 H 0.06 4.17 7.39 -2.91 -0.02 4.14 16 9 N -0.59 -29.41 5.09 -306.98 -1.56 -30.97 16 10 C 0.45 21.45 7.82 87.65 0.69 22.13 16 11 O -0.61 -34.59 15.78 -3.07 -0.05 -34.64 16 12 C 0.07 2.26 5.96 85.56 0.51 2.77 16 13 N -0.68 -20.81 5.93 -495.54 -2.94 -23.75 16 14 C 0.09 2.05 2.12 44.92 0.10 2.15 16 15 H 0.04 0.99 5.61 -2.38 -0.01 0.97 16 16 C -0.12 -1.69 4.73 30.93 0.15 -1.54 16 17 C -0.08 -0.77 4.27 -9.05 -0.04 -0.81 16 18 H 0.14 0.48 8.14 -2.39 -0.02 0.46 16 19 C -0.12 -1.36 6.31 32.99 0.21 -1.15 16 20 C 0.13 2.50 4.00 46.61 0.19 2.69 16 21 H 0.08 1.88 8.02 -2.39 -0.02 1.86 16 22 C -0.11 -2.76 5.20 30.90 0.16 -2.60 16 23 N -0.61 -11.50 2.38 -783.99 -1.87 -13.37 16 24 C 0.55 13.40 7.80 86.57 0.68 14.08 16 25 O -0.60 -20.08 16.48 -4.07 -0.07 -20.15 16 26 C -0.22 -3.75 9.19 23.43 0.22 -3.54 16 27 C -0.03 -0.52 9.24 24.52 0.23 -0.29 16 28 C -0.15 -1.72 6.00 -11.54 -0.07 -1.78 16 29 C -0.17 -1.84 10.24 30.62 0.31 -1.53 16 30 C -0.16 -1.43 10.24 30.62 0.31 -1.12 16 31 C 0.10 1.05 4.82 86.85 0.42 1.47 16 32 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 33 H 0.39 16.41 5.76 -92.71 -0.53 15.87 16 34 H 0.09 3.09 7.46 -2.38 -0.02 3.07 16 35 H 0.07 2.03 8.05 -2.39 -0.02 2.01 16 36 H 0.35 10.85 8.05 -89.69 -0.72 10.12 16 37 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.08 1.25 7.98 -2.39 -0.02 1.23 16 39 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 40 H 0.10 1.07 7.75 -2.39 -0.02 1.06 16 41 H 0.08 2.01 8.00 -2.39 -0.02 1.99 16 42 H 0.03 0.91 7.52 -2.39 -0.02 0.89 16 43 H 0.15 1.68 7.39 -2.91 -0.02 1.66 16 44 H 0.11 2.27 7.49 -2.91 -0.02 2.25 16 45 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.08 0.83 6.83 -2.39 -0.02 0.81 16 51 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -83.88 406.58 0.73 -83.15 By element: Atomic # 1 Polarization: 42.57 SS G_CDS: -0.36 Total: 42.20 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: 5.37 Total: 11.81 kcal Atomic # 7 Polarization: -118.62 SS G_CDS: -6.07 Total: -124.69 kcal Atomic # 8 Polarization: -54.68 SS G_CDS: -0.12 Total: -54.79 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 1.90 Total: 42.32 kcal Total: -83.88 0.73 -83.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108659051.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.841 kcal (2) G-P(sol) polarization free energy of solvation -83.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds