Wall clock time and date at job start Wed Apr 1 2020 05:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99845 * 2 1 4 4 H 1.48501 * 109.47471 * 269.99861 * 3 2 1 5 5 H 1.48505 * 109.47086 * 29.99740 * 3 2 1 6 6 H 1.48504 * 109.47360 * 149.99749 * 3 2 1 7 7 C 1.38806 * 120.00113 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00215 * 0.02562 * 7 2 1 9 9 N 1.36942 * 120.00068 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99803 * 173.80237 * 9 7 2 11 11 C 1.53001 * 109.47154 * 63.15969 * 10 9 7 12 12 N 1.46502 * 109.47014 * 54.66224 * 11 10 9 13 13 C 1.34774 * 119.99882 * 176.26482 * 12 11 10 14 14 O 1.21696 * 120.00139 * 359.97438 * 13 12 11 15 15 C 1.46681 * 120.00209 * 179.97438 * 13 12 11 16 16 C 1.38155 * 126.19539 * 180.15797 * 15 13 12 17 17 C 1.38933 * 106.95488 * 180.22764 * 16 15 13 18 18 C 1.36282 * 108.01831 * 359.82114 * 17 16 15 19 19 N 1.34743 * 108.83784 * 359.92435 * 18 17 16 20 20 H 0.96994 * 125.70943 * 180.02562 * 19 18 17 21 21 C 1.51089 * 122.57898 * 179.83962 * 18 17 16 22 22 C 1.53550 * 107.71848 * 344.11747 * 21 18 17 23 23 O 1.42992 * 109.68178 * 48.03007 * 22 21 18 24 24 C 1.43418 * 114.33783 * 288.95857 * 23 22 21 25 25 C 1.53004 * 109.46635 * 183.15557 * 10 9 7 26 26 C 1.53001 * 109.47013 * 60.00325 * 25 10 9 27 27 C 1.53002 * 109.46891 * 59.99899 * 26 25 10 28 28 C 1.52998 * 109.47075 * 299.99767 * 27 26 25 29 29 C 1.52991 * 109.47106 * 60.00334 * 28 27 26 30 30 H 0.96999 * 120.00235 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99504 * 353.80776 * 9 7 2 32 32 H 1.08998 * 109.47005 * 294.66404 * 11 10 9 33 33 H 1.08999 * 109.46919 * 174.66150 * 11 10 9 34 34 H 0.97004 * 120.00272 * 356.25651 * 12 11 10 35 35 H 1.08007 * 126.52231 * 0.02562 * 16 15 13 36 36 H 1.08997 * 109.81002 * 103.69815 * 21 18 17 37 37 H 1.08997 * 109.80719 * 224.58391 * 21 18 17 38 38 H 1.09003 * 109.44150 * 287.96495 * 22 21 18 39 39 H 1.08994 * 109.39331 * 168.07263 * 22 21 18 40 40 H 1.08997 * 109.76362 * 291.12018 * 24 23 22 41 41 H 1.09001 * 109.80430 * 170.36619 * 24 23 22 42 42 H 1.09008 * 109.46899 * 180.02562 * 25 10 9 43 43 H 1.08992 * 109.47373 * 299.99965 * 25 10 9 44 44 H 1.08992 * 109.47058 * 299.99967 * 26 25 10 45 45 H 1.09001 * 109.47144 * 179.97438 * 26 25 10 46 46 H 1.09008 * 109.46859 * 179.97438 * 27 26 25 47 47 H 1.08996 * 109.47652 * 59.99971 * 27 26 25 48 48 H 1.09000 * 109.46839 * 300.00112 * 28 27 26 49 49 H 1.09001 * 109.47198 * 180.02562 * 28 27 26 50 50 H 1.09001 * 109.47180 * 180.02562 * 29 28 27 51 51 H 1.09000 * 109.47452 * 60.00155 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4633 0.1375 11 6 3.8027 -3.3659 -1.0585 12 7 4.0935 -2.6467 -2.3012 13 6 3.9670 -3.2731 -3.4878 14 8 3.6115 -4.4364 -3.5269 15 6 4.2576 -2.5529 -4.7321 16 6 4.1679 -3.0659 -6.0117 17 6 4.5360 -2.0483 -6.8830 18 6 4.8366 -0.9458 -6.1404 19 7 4.6671 -1.2400 -4.8364 20 1 4.8128 -0.6316 -4.0952 21 6 5.2829 0.3570 -6.7621 22 6 5.6996 0.0648 -8.2108 23 8 4.6920 -0.7210 -8.8526 24 6 4.6146 -2.0759 -8.3889 25 6 5.6146 -2.1777 0.1856 26 6 5.9241 -1.2752 1.3817 27 6 5.4964 -1.9753 2.6731 28 6 3.9940 -2.2608 2.6249 29 6 3.6845 -3.1633 1.4290 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3669 -0.0914 32 1 2.7496 -3.6464 -1.0390 33 1 4.4189 -4.2634 -1.0054 34 1 4.3771 -1.7195 -2.2701 35 1 3.8714 -4.0684 -6.2830 36 1 4.4607 1.0724 -6.7509 37 1 6.1310 0.7592 -6.2080 38 1 6.6426 -0.4819 -8.2139 39 1 5.8236 1.0049 -8.7483 40 1 5.5034 -2.6238 -8.7017 41 1 3.7240 -2.5551 -8.7956 42 1 6.1597 -3.1162 0.2875 43 1 5.9193 -1.6791 -0.7344 44 1 5.3790 -0.3369 1.2794 45 1 6.9945 -1.0721 1.4162 46 1 5.7173 -1.3324 3.5252 47 1 6.0414 -2.9137 2.7754 48 1 3.4490 -1.3224 2.5227 49 1 3.6892 -2.7592 3.5451 50 1 2.6141 -3.3663 1.3944 51 1 4.2295 -4.1017 1.5313 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115569680.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:11 Heat of formation + Delta-G solvation = -38.153140 kcal Electronic energy + Delta-G solvation = -31815.607224 eV Core-core repulsion = 27715.105999 eV Total energy + Delta-G solvation = -4100.501224 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.68309 -39.56577 -38.56282 -37.84551 -34.63279 -33.42716 -32.59382 -31.80654 -31.21289 -30.42205 -29.44400 -28.89260 -26.27118 -24.74015 -23.71325 -23.56094 -22.37398 -21.75377 -20.56294 -19.94858 -19.12336 -18.65766 -18.08767 -17.86009 -16.51645 -16.06313 -15.71382 -15.39805 -15.18324 -14.88863 -14.64210 -14.49450 -14.28510 -14.05709 -13.75988 -13.64494 -13.55605 -13.32984 -13.10806 -12.71107 -12.61141 -12.37330 -12.31112 -12.08702 -12.00683 -11.74331 -11.56296 -11.32705 -11.10933 -11.08976 -10.92110 -10.69755 -10.37959 -10.13321 -10.01793 -9.99685 -9.76334 -9.72546 -9.44775 -8.99099 -8.88972 -8.64454 -7.96489 -7.40639 -5.85688 -3.23582 1.54201 2.54393 2.93673 3.21486 3.24064 3.33903 3.49310 3.64909 3.68326 4.43778 4.46463 4.64671 4.88349 4.92397 4.93588 5.03504 5.06223 5.07902 5.15072 5.25206 5.28758 5.33044 5.39632 5.44833 5.54890 5.60120 5.63831 5.71011 5.79349 5.83996 5.92293 5.92974 5.99288 6.05704 6.08001 6.13858 6.25996 6.38372 6.43572 6.52193 6.62278 6.65215 6.66751 6.81506 6.86963 6.92619 6.98001 7.02867 7.30574 7.86200 7.90498 8.32538 8.51219 9.08791 9.80194 9.99004 11.32283 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011301 B = 0.003305 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.000439 B = 8470.735209 C = 9342.601844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.010 3.990 3 Si 0.875 3.125 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.276 1.276 7 C -0.237 4.237 8 H 0.092 0.908 9 N -0.736 5.736 10 C 0.197 3.803 11 C 0.117 3.883 12 N -0.702 5.702 13 C 0.584 3.416 14 O -0.540 6.540 15 C -0.044 4.044 16 C -0.093 4.093 17 C -0.223 4.223 18 C 0.050 3.950 19 N -0.521 5.521 20 H 0.417 0.583 21 C -0.088 4.088 22 C 0.071 3.929 23 O -0.381 6.381 24 C 0.138 3.862 25 C -0.117 4.117 26 C -0.117 4.117 27 C -0.114 4.114 28 C -0.110 4.110 29 C -0.114 4.114 30 H 0.259 0.741 31 H 0.359 0.641 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.393 0.607 35 H 0.149 0.851 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.056 0.944 39 H 0.101 0.899 40 H 0.060 0.940 41 H 0.102 0.898 42 H 0.065 0.935 43 H 0.053 0.947 44 H 0.066 0.934 45 H 0.051 0.949 46 H 0.052 0.948 47 H 0.053 0.947 48 H 0.079 0.921 49 H 0.048 0.952 50 H 0.071 0.929 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.205 -0.872 -8.992 18.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.186 4.186 3 Si 0.705 3.295 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.202 1.202 7 C -0.367 4.367 8 H 0.110 0.890 9 N -0.380 5.380 10 C 0.106 3.894 11 C -0.008 4.008 12 N -0.351 5.351 13 C 0.371 3.629 14 O -0.418 6.418 15 C -0.157 4.157 16 C -0.119 4.119 17 C -0.230 4.230 18 C -0.070 4.070 19 N -0.116 5.116 20 H 0.254 0.746 21 C -0.126 4.126 22 C -0.007 4.007 23 O -0.299 6.299 24 C 0.061 3.939 25 C -0.155 4.155 26 C -0.154 4.154 27 C -0.152 4.152 28 C -0.147 4.147 29 C -0.154 4.154 30 H 0.069 0.931 31 H 0.193 0.807 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.227 0.773 35 H 0.167 0.833 36 H 0.108 0.892 37 H 0.103 0.897 38 H 0.074 0.926 39 H 0.119 0.881 40 H 0.078 0.922 41 H 0.120 0.880 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.097 0.903 49 H 0.067 0.933 50 H 0.090 0.910 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 15.571 -1.627 -8.926 18.021 hybrid contribution 0.707 2.034 0.790 2.294 sum 16.277 0.407 -8.136 18.202 Atomic orbital electron populations 1.69683 1.05071 1.25709 1.57101 1.24654 0.95063 0.96817 1.02082 0.86725 0.79489 0.85773 0.77466 1.21553 1.21814 1.20158 1.18932 0.80313 0.94561 1.42912 0.89017 1.42816 1.04037 1.02290 1.88809 1.19793 0.90060 0.87460 0.92134 1.21891 1.01502 0.94250 0.83201 1.45629 1.68243 1.15464 1.05764 1.16968 0.77907 0.86104 0.81914 1.90808 1.48147 1.16118 1.86717 1.20656 1.14653 0.84594 0.95792 1.20760 1.02323 0.99405 0.89458 1.19875 1.12189 0.94528 0.96371 1.20191 1.06161 0.97470 0.83149 1.41657 1.51484 1.11120 1.07309 0.74571 1.21022 1.02126 0.92780 0.96696 1.22519 0.90870 0.96171 0.91136 1.88014 1.56806 1.23008 1.62065 1.21028 1.01917 0.82901 0.88009 1.21744 0.96107 0.99870 0.97771 1.21495 0.99610 0.99400 0.94923 1.21497 0.97271 0.99561 0.96853 1.21368 0.94977 1.01465 0.96910 1.21760 1.01977 0.96911 0.94729 0.93056 0.80732 0.90994 0.92331 0.77325 0.83303 0.89216 0.89667 0.92591 0.88141 0.92161 0.87972 0.91599 0.92792 0.91574 0.93009 0.92922 0.92828 0.90264 0.93280 0.91005 0.93336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.87 13.97 55.49 0.78 -27.10 16 2 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 3 Si 0.87 20.36 27.67 -169.99 -4.70 15.66 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -5.92 6.61 56.52 0.37 -5.54 16 7 C -0.24 -5.94 9.18 -15.06 -0.14 -6.08 16 8 H 0.09 2.56 7.01 -52.49 -0.37 2.20 16 9 N -0.74 -14.61 3.19 -47.23 -0.15 -14.76 16 10 C 0.20 3.25 0.41 -131.82 -0.05 3.19 16 11 C 0.12 2.04 4.37 -4.04 -0.02 2.02 16 12 N -0.70 -11.66 5.09 -61.62 -0.31 -11.97 16 13 C 0.58 10.45 7.79 -12.85 -0.10 10.35 16 14 O -0.54 -11.30 16.88 5.19 0.09 -11.21 16 15 C -0.04 -0.69 7.06 -81.75 -0.58 -1.26 16 16 C -0.09 -1.37 10.63 -39.35 -0.42 -1.79 16 17 C -0.22 -2.87 6.02 -105.01 -0.63 -3.51 16 18 C 0.05 0.61 7.14 -81.83 -0.58 0.02 16 19 N -0.52 -6.73 5.97 -5.43 -0.03 -6.76 16 20 H 0.42 4.57 8.19 -40.82 -0.33 4.24 16 21 C -0.09 -0.78 6.56 -27.41 -0.18 -0.96 16 22 C 0.07 0.58 6.78 37.44 0.25 0.83 16 23 O -0.38 -4.21 10.74 -35.23 -0.38 -4.59 16 24 C 0.14 1.45 7.25 36.07 0.26 1.71 16 25 C -0.12 -1.59 4.65 -26.73 -0.12 -1.72 16 26 C -0.12 -1.57 5.75 -26.73 -0.15 -1.72 16 27 C -0.11 -1.53 5.92 -26.73 -0.16 -1.69 16 28 C -0.11 -1.74 5.76 -26.74 -0.15 -1.89 16 29 C -0.11 -1.87 4.51 -26.74 -0.12 -1.99 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.36 7.05 4.57 -40.82 -0.19 6.86 16 32 H 0.07 1.48 7.51 -51.93 -0.39 1.09 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.39 5.97 6.53 -40.82 -0.27 5.70 16 35 H 0.15 2.06 8.06 -52.48 -0.42 1.64 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 43 H 0.05 0.69 7.29 -51.93 -0.38 0.31 16 44 H 0.07 1.02 6.93 -51.93 -0.36 0.66 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 47 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.08 1.50 7.60 -51.93 -0.39 1.11 16 49 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.07 1.36 7.23 -51.93 -0.38 0.98 16 51 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 394.65 15.07 5.95 5.95 Total: -1.00 -32.24 394.65 -9.89 -42.13 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: -8.13 Total: 16.94 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -2.99 Total: -4.29 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: 0.28 Total: -60.59 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.29 Total: -15.80 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.70 Total: 15.66 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.24 -9.89 -42.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115569680.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.978 kcal (2) G-P(sol) polarization free energy of solvation -32.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds