Wall clock time and date at job start Wed Apr 1 2020 05:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99845 * 2 1 4 4 H 1.48501 * 109.47471 * 269.99861 * 3 2 1 5 5 H 1.48505 * 109.47086 * 29.99740 * 3 2 1 6 6 H 1.48504 * 109.47360 * 149.99749 * 3 2 1 7 7 C 1.38806 * 120.00113 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00215 * 0.02562 * 7 2 1 9 9 N 1.36942 * 120.00068 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99803 * 173.80237 * 9 7 2 11 11 C 1.53001 * 109.47154 * 63.15969 * 10 9 7 12 12 N 1.46502 * 109.47014 * 54.66224 * 11 10 9 13 13 C 1.34774 * 119.99882 * 176.26482 * 12 11 10 14 14 O 1.21696 * 120.00139 * 359.97438 * 13 12 11 15 15 C 1.46681 * 120.00209 * 179.97438 * 13 12 11 16 16 C 1.38155 * 126.19539 * 180.15797 * 15 13 12 17 17 C 1.38933 * 106.95488 * 180.22764 * 16 15 13 18 18 C 1.36282 * 108.01831 * 359.82114 * 17 16 15 19 19 N 1.34743 * 108.83784 * 359.92435 * 18 17 16 20 20 H 0.96994 * 125.70943 * 180.02562 * 19 18 17 21 21 C 1.51089 * 122.57898 * 179.83962 * 18 17 16 22 22 C 1.53550 * 107.71848 * 344.11747 * 21 18 17 23 23 O 1.42992 * 109.68178 * 48.03007 * 22 21 18 24 24 C 1.43418 * 114.33783 * 288.95857 * 23 22 21 25 25 C 1.53004 * 109.46635 * 183.15557 * 10 9 7 26 26 C 1.53001 * 109.47013 * 60.00325 * 25 10 9 27 27 C 1.53002 * 109.46891 * 59.99899 * 26 25 10 28 28 C 1.52998 * 109.47075 * 299.99767 * 27 26 25 29 29 C 1.52991 * 109.47106 * 60.00334 * 28 27 26 30 30 H 0.96999 * 120.00235 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99504 * 353.80776 * 9 7 2 32 32 H 1.08998 * 109.47005 * 294.66404 * 11 10 9 33 33 H 1.08999 * 109.46919 * 174.66150 * 11 10 9 34 34 H 0.97004 * 120.00272 * 356.25651 * 12 11 10 35 35 H 1.08007 * 126.52231 * 0.02562 * 16 15 13 36 36 H 1.08997 * 109.81002 * 103.69815 * 21 18 17 37 37 H 1.08997 * 109.80719 * 224.58391 * 21 18 17 38 38 H 1.09003 * 109.44150 * 287.96495 * 22 21 18 39 39 H 1.08994 * 109.39331 * 168.07263 * 22 21 18 40 40 H 1.08997 * 109.76362 * 291.12018 * 24 23 22 41 41 H 1.09001 * 109.80430 * 170.36619 * 24 23 22 42 42 H 1.09008 * 109.46899 * 180.02562 * 25 10 9 43 43 H 1.08992 * 109.47373 * 299.99965 * 25 10 9 44 44 H 1.08992 * 109.47058 * 299.99967 * 26 25 10 45 45 H 1.09001 * 109.47144 * 179.97438 * 26 25 10 46 46 H 1.09008 * 109.46859 * 179.97438 * 27 26 25 47 47 H 1.08996 * 109.47652 * 59.99971 * 27 26 25 48 48 H 1.09000 * 109.46839 * 300.00112 * 28 27 26 49 49 H 1.09001 * 109.47198 * 180.02562 * 28 27 26 50 50 H 1.09001 * 109.47180 * 180.02562 * 29 28 27 51 51 H 1.09000 * 109.47452 * 60.00155 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4633 0.1375 11 6 3.8027 -3.3659 -1.0585 12 7 4.0935 -2.6467 -2.3012 13 6 3.9670 -3.2731 -3.4878 14 8 3.6115 -4.4364 -3.5269 15 6 4.2576 -2.5529 -4.7321 16 6 4.1679 -3.0659 -6.0117 17 6 4.5360 -2.0483 -6.8830 18 6 4.8366 -0.9458 -6.1404 19 7 4.6671 -1.2400 -4.8364 20 1 4.8128 -0.6316 -4.0952 21 6 5.2829 0.3570 -6.7621 22 6 5.6996 0.0648 -8.2108 23 8 4.6920 -0.7210 -8.8526 24 6 4.6146 -2.0759 -8.3889 25 6 5.6146 -2.1777 0.1856 26 6 5.9241 -1.2752 1.3817 27 6 5.4964 -1.9753 2.6731 28 6 3.9940 -2.2608 2.6249 29 6 3.6845 -3.1633 1.4290 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3669 -0.0914 32 1 2.7496 -3.6464 -1.0390 33 1 4.4189 -4.2634 -1.0054 34 1 4.3771 -1.7195 -2.2701 35 1 3.8714 -4.0684 -6.2830 36 1 4.4607 1.0724 -6.7509 37 1 6.1310 0.7592 -6.2080 38 1 6.6426 -0.4819 -8.2139 39 1 5.8236 1.0049 -8.7483 40 1 5.5034 -2.6238 -8.7017 41 1 3.7240 -2.5551 -8.7956 42 1 6.1597 -3.1162 0.2875 43 1 5.9193 -1.6791 -0.7344 44 1 5.3790 -0.3369 1.2794 45 1 6.9945 -1.0721 1.4162 46 1 5.7173 -1.3324 3.5252 47 1 6.0414 -2.9137 2.7754 48 1 3.4490 -1.3224 2.5227 49 1 3.6892 -2.7592 3.5451 50 1 2.6141 -3.3663 1.3944 51 1 4.2295 -4.1017 1.5313 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115569680.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:10 Heat of formation + Delta-G solvation = -60.398351 kcal Electronic energy + Delta-G solvation = -31816.571848 eV Core-core repulsion = 27715.105999 eV Total energy + Delta-G solvation = -4101.465849 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.71776 -40.92641 -39.80551 -38.80409 -36.02686 -35.18669 -33.42855 -33.26048 -32.48066 -31.64025 -30.97495 -29.94822 -27.43871 -25.77936 -25.45805 -24.56944 -23.57390 -22.86489 -21.82679 -21.22045 -20.08081 -19.91421 -19.77829 -19.39500 -17.37403 -17.07089 -16.91420 -16.63260 -16.50089 -16.31782 -15.96645 -15.83187 -15.33506 -15.21297 -15.00372 -14.92078 -14.73266 -14.52162 -14.32230 -14.07747 -13.96083 -13.66282 -13.49207 -13.35617 -13.04129 -12.99219 -12.86900 -12.71809 -12.41636 -12.38159 -12.14412 -11.94275 -11.77259 -11.72205 -11.38488 -11.30909 -11.17840 -10.81570 -10.78667 -10.76603 -10.13464 -9.89855 -9.29831 -9.01946 -7.96965 -5.31271 0.36567 1.32739 1.38576 1.46587 1.51597 1.91472 2.16567 2.34524 2.49449 2.96475 3.32718 3.49508 3.64499 3.79828 3.82985 3.89209 3.97457 4.02071 4.04613 4.18696 4.31798 4.34121 4.39365 4.54593 4.58948 4.62839 4.66069 4.67330 4.73128 4.76857 4.80489 4.82313 4.89291 4.95243 4.99441 5.00439 5.10679 5.13127 5.18247 5.33063 5.38492 5.43414 5.47141 5.57613 5.66443 5.70477 5.77980 5.86231 6.22875 6.25822 6.33544 6.54314 7.12196 7.12970 7.84850 8.06240 9.25037 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011301 B = 0.003305 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.000439 B = 8470.735209 C = 9342.601844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.989 5.989 2 C -0.065 4.065 3 Si 0.945 3.055 4 H -0.279 1.279 5 H -0.310 1.310 6 H -0.242 1.242 7 C -0.200 4.200 8 H 0.048 0.952 9 N -0.729 5.729 10 C 0.196 3.804 11 C 0.124 3.876 12 N -0.695 5.695 13 C 0.582 3.418 14 O -0.581 6.581 15 C -0.077 4.077 16 C -0.100 4.100 17 C -0.236 4.236 18 C 0.060 3.940 19 N -0.514 5.514 20 H 0.425 0.575 21 C -0.087 4.087 22 C 0.065 3.935 23 O -0.398 6.398 24 C 0.139 3.861 25 C -0.111 4.111 26 C -0.115 4.115 27 C -0.109 4.109 28 C -0.108 4.108 29 C -0.114 4.114 30 H 0.252 0.748 31 H 0.367 0.633 32 H 0.027 0.973 33 H 0.073 0.927 34 H 0.401 0.599 35 H 0.147 0.853 36 H 0.091 0.909 37 H 0.114 0.886 38 H 0.068 0.932 39 H 0.126 0.874 40 H 0.079 0.921 41 H 0.105 0.895 42 H 0.088 0.912 43 H 0.068 0.932 44 H 0.046 0.954 45 H 0.083 0.917 46 H 0.063 0.937 47 H 0.075 0.925 48 H 0.042 0.958 49 H 0.056 0.944 50 H 0.031 0.969 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.710 0.766 -9.672 22.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.640 5.640 2 C -0.255 4.255 3 Si 0.773 3.227 4 H -0.205 1.205 5 H -0.238 1.238 6 H -0.166 1.166 7 C -0.332 4.332 8 H 0.066 0.934 9 N -0.373 5.373 10 C 0.106 3.894 11 C -0.002 4.002 12 N -0.344 5.344 13 C 0.370 3.630 14 O -0.462 6.462 15 C -0.189 4.189 16 C -0.126 4.126 17 C -0.243 4.243 18 C -0.061 4.061 19 N -0.109 5.109 20 H 0.265 0.735 21 C -0.125 4.125 22 C -0.012 4.012 23 O -0.317 6.317 24 C 0.062 3.938 25 C -0.149 4.149 26 C -0.153 4.153 27 C -0.147 4.147 28 C -0.146 4.146 29 C -0.154 4.154 30 H 0.061 0.939 31 H 0.201 0.799 32 H 0.046 0.954 33 H 0.092 0.908 34 H 0.237 0.763 35 H 0.164 0.836 36 H 0.110 0.890 37 H 0.132 0.868 38 H 0.086 0.914 39 H 0.144 0.856 40 H 0.097 0.903 41 H 0.123 0.877 42 H 0.106 0.894 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.101 0.899 46 H 0.082 0.918 47 H 0.094 0.906 48 H 0.060 0.940 49 H 0.075 0.925 50 H 0.050 0.950 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 20.160 0.010 -9.591 22.326 hybrid contribution -0.707 1.404 0.954 1.839 sum 19.453 1.413 -8.636 21.331 Atomic orbital electron populations 1.69905 1.07437 1.26132 1.60530 1.25422 0.95780 1.00900 1.03427 0.85573 0.79075 0.80133 0.77914 1.20513 1.23773 1.16632 1.18715 0.82517 0.92579 1.39360 0.93350 1.42691 1.02078 1.04078 1.88462 1.20003 0.92360 0.85621 0.91447 1.21763 0.99123 0.95314 0.84041 1.45538 1.67873 1.15733 1.05276 1.17314 0.77062 0.85790 0.82789 1.90771 1.50152 1.17940 1.87370 1.20315 1.17674 0.86058 0.94879 1.20956 1.01934 0.99946 0.89811 1.20214 1.12121 0.94192 0.97726 1.20881 1.03907 0.98672 0.82606 1.41618 1.51009 1.10209 1.08111 0.73544 1.21229 1.03235 0.90835 0.97221 1.22790 0.90597 0.97119 0.90708 1.87997 1.57964 1.23212 1.62526 1.21109 1.03025 0.83327 0.86302 1.21733 0.92798 1.01421 0.98925 1.21503 1.01258 0.98146 0.94356 1.21479 0.94737 1.00973 0.97490 1.21322 0.97146 0.99359 0.96727 1.21748 0.99888 0.98524 0.95217 0.93902 0.79901 0.95438 0.90842 0.76319 0.83566 0.89034 0.86768 0.91367 0.85631 0.90346 0.87664 0.89357 0.91385 0.93547 0.89889 0.91786 0.90623 0.93950 0.92530 0.94986 0.90583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.53 13.97 21.65 0.30 -62.23 16 2 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 3 Si 0.94 42.40 27.67 68.60 1.90 44.29 16 4 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.31 -14.85 7.11 99.48 0.71 -14.14 16 6 H -0.24 -9.41 6.61 99.48 0.66 -8.75 16 7 C -0.20 -10.45 9.18 84.03 0.77 -9.68 16 8 H 0.05 2.93 7.01 -2.91 -0.02 2.91 16 9 N -0.73 -28.80 3.19 -303.35 -0.97 -29.77 16 10 C 0.20 6.31 0.41 3.60 0.00 6.31 16 11 C 0.12 4.37 4.37 86.38 0.38 4.75 16 12 N -0.70 -23.13 5.09 -467.08 -2.38 -25.51 16 13 C 0.58 21.30 7.79 86.45 0.67 21.97 16 14 O -0.58 -25.39 16.88 -4.34 -0.07 -25.46 16 15 C -0.08 -2.39 7.06 40.37 0.29 -2.10 16 16 C -0.10 -2.93 10.63 22.42 0.24 -2.69 16 17 C -0.24 -5.78 6.02 -20.11 -0.12 -5.90 16 18 C 0.06 1.33 7.14 41.78 0.30 1.63 16 19 N -0.51 -12.48 5.97 -171.09 -1.02 -13.50 16 20 H 0.43 8.43 8.19 -92.71 -0.76 7.67 16 21 C -0.09 -1.24 6.56 30.16 0.20 -1.04 16 22 C 0.06 0.83 6.78 72.17 0.49 1.32 16 23 O -0.40 -7.80 10.74 -148.98 -1.60 -9.40 16 24 C 0.14 2.67 7.25 71.28 0.52 3.18 16 25 C -0.11 -2.61 4.65 30.60 0.14 -2.47 16 26 C -0.12 -2.60 5.75 30.60 0.18 -2.42 16 27 C -0.11 -2.52 5.92 30.59 0.18 -2.34 16 28 C -0.11 -3.30 5.76 30.59 0.18 -3.13 16 29 C -0.11 -3.74 4.51 30.59 0.14 -3.60 16 30 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 31 H 0.37 13.67 4.57 -92.71 -0.42 13.24 16 32 H 0.03 1.21 7.51 -2.39 -0.02 1.19 16 33 H 0.07 2.38 8.14 -2.39 -0.02 2.37 16 34 H 0.40 11.76 6.53 -92.71 -0.60 11.15 16 35 H 0.15 4.20 8.06 -2.91 -0.02 4.18 16 36 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.07 0.73 8.09 -2.39 -0.02 0.71 16 39 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 43 H 0.07 1.45 7.29 -2.39 -0.02 1.43 16 44 H 0.05 1.24 6.93 -2.39 -0.02 1.23 16 45 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 47 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.04 1.60 7.60 -2.39 -0.02 1.58 16 49 H 0.06 1.61 8.14 -2.39 -0.02 1.60 16 50 H 0.03 1.28 7.23 -2.39 -0.02 1.26 16 51 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -75.89 394.65 0.30 -75.59 By element: Atomic # 1 Polarization: 46.22 SS G_CDS: -0.87 Total: 45.35 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 5.01 Total: 0.64 kcal Atomic # 7 Polarization: -126.95 SS G_CDS: -4.06 Total: -131.01 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -1.67 Total: -34.87 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 1.90 Total: 44.29 kcal Total: -75.89 0.30 -75.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115569680.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.194 kcal (2) G-P(sol) polarization free energy of solvation -75.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds