Wall clock time and date at job start Wed Apr 1 2020 05:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35901 * 117.00426 * 2 1 4 4 C 1.38754 * 120.05231 * 359.97438 * 3 2 1 5 5 C 1.38122 * 119.94153 * 180.02562 * 4 3 2 6 6 C 1.38291 * 120.05366 * 0.03060 * 5 4 3 7 7 C 1.38239 * 120.11599 * 359.94886 * 6 5 4 8 8 C 1.50700 * 119.97520 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.46755 * 90.00128 * 8 7 6 10 10 C 1.52995 * 109.54406 * 299.99644 * 9 8 7 11 11 N 1.46507 * 109.47583 * 301.06870 * 10 9 8 12 12 C 1.34774 * 120.00170 * 180.87977 * 11 10 9 13 13 O 1.21281 * 119.99720 * 359.72665 * 12 11 10 14 14 C 1.50694 * 119.99686 * 179.97438 * 12 11 10 15 15 C 1.50708 * 109.46965 * 179.72795 * 14 12 11 16 16 H 1.07989 * 119.99668 * 359.97438 * 15 14 12 17 17 C 1.37876 * 119.99619 * 180.02562 * 15 14 12 18 18 N 1.31508 * 120.00479 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99595 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47032 * 60.00164 * 19 17 15 21 21 H 1.48497 * 109.47110 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47104 * 300.00116 * 19 17 15 23 23 C 1.53173 * 109.54707 * 60.17719 * 9 8 7 24 24 C 1.53281 * 109.06581 * 176.84940 * 23 9 8 25 25 O 1.42909 * 109.46049 * 302.44775 * 24 23 9 26 26 C 1.42902 * 114.09836 * 61.15783 * 25 24 23 27 27 C 1.53088 * 109.41325 * 298.83913 * 26 25 24 28 28 C 1.38167 * 120.05319 * 0.27939 * 7 6 5 29 29 H 1.08995 * 109.47471 * 300.00654 * 1 2 3 30 30 H 1.09011 * 109.46580 * 60.00127 * 1 2 3 31 31 H 1.08998 * 109.47812 * 179.97438 * 1 2 3 32 32 H 1.08001 * 120.03167 * 0.02562 * 4 3 2 33 33 H 1.07997 * 119.97112 * 179.97438 * 5 4 3 34 34 H 1.08001 * 119.94004 * 179.97438 * 6 5 4 35 35 H 1.08995 * 109.47282 * 330.00312 * 8 7 6 36 36 H 1.08993 * 109.47116 * 209.99470 * 8 7 6 37 37 H 1.09008 * 109.47317 * 181.06405 * 10 9 8 38 38 H 1.09003 * 109.46991 * 61.06728 * 10 9 8 39 39 H 0.96997 * 119.99512 * 0.88322 * 11 10 9 40 40 H 1.09002 * 109.47494 * 299.72759 * 14 12 11 41 41 H 1.08999 * 109.47327 * 59.72905 * 14 12 11 42 42 H 0.97007 * 120.00308 * 179.97438 * 18 17 15 43 43 H 1.08992 * 109.52457 * 296.84138 * 23 9 8 44 44 H 1.09007 * 109.52453 * 57.03133 * 23 9 8 45 45 H 1.08999 * 109.46364 * 182.44901 * 24 23 9 46 46 H 1.09002 * 109.46763 * 62.44482 * 24 23 9 47 47 H 1.08996 * 109.47848 * 178.86042 * 26 25 24 48 48 H 1.09001 * 109.49069 * 58.82678 * 26 25 24 49 49 H 1.08997 * 109.52747 * 297.70639 * 27 26 25 50 50 H 1.08998 * 109.52602 * 177.51334 * 27 26 25 51 51 H 1.07997 * 120.02814 * 179.74169 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9210 3.6047 -0.0011 6 6 3.3021 3.6756 -0.0017 7 6 4.0561 2.5169 -0.0007 8 6 5.5610 2.5979 -0.0009 9 6 6.0702 2.6265 1.4416 10 6 5.4948 3.8466 2.1634 11 7 5.8971 5.0661 1.4581 12 6 5.5181 6.2716 1.9264 13 8 4.8398 6.3467 2.9290 14 6 5.9324 7.5259 1.2012 15 6 5.3780 8.7285 1.9206 16 1 4.7846 8.5976 2.8133 17 6 5.6275 9.9959 1.4383 18 7 6.3496 10.1553 0.3508 19 14 4.9396 11.4865 2.3296 20 1 5.4672 11.5205 3.7172 21 1 5.3470 12.7225 1.6143 22 1 3.4576 11.4015 2.3654 23 6 5.6322 1.3494 2.1651 24 6 6.2139 1.3528 3.5833 25 8 7.6374 1.4581 3.5137 26 6 8.1040 2.6553 2.8883 27 6 7.6001 2.7043 1.4435 28 6 3.4312 1.2847 -0.0050 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3635 -1.0276 -0.0005 32 1 0.2129 2.3204 -0.0005 33 1 1.3342 4.5113 -0.0019 34 1 3.7925 4.6379 -0.0025 35 1 5.8760 3.5056 -0.5154 36 1 5.9715 1.7283 -0.5139 37 1 5.8733 3.8762 3.1853 38 1 4.4070 3.7790 2.1807 39 1 6.4362 5.0057 0.6540 40 1 7.0203 7.5879 1.1748 41 1 5.5451 7.5014 0.1826 42 1 6.5248 11.0470 0.0113 43 1 4.5440 1.3143 2.2156 44 1 6.0009 0.4787 1.6227 45 1 5.9423 0.4264 4.0894 46 1 5.8134 2.2011 4.1382 47 1 9.1939 2.6672 2.8937 48 1 7.7282 3.5209 3.4338 49 1 8.0083 1.8611 0.8865 50 1 7.9178 3.6374 0.9783 51 1 4.0207 0.3798 -0.0084 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143205286.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:51 Heat of formation + Delta-G solvation = -131.361314 kcal Electronic energy + Delta-G solvation = -31860.288086 eV Core-core repulsion = 27723.452301 eV Total energy + Delta-G solvation = -4136.835785 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.87600 -40.79874 -39.94873 -38.65000 -36.87119 -35.09062 -34.47774 -32.55205 -31.97119 -31.38617 -31.05674 -28.54174 -28.05204 -27.43955 -25.29585 -24.58228 -24.24241 -23.28961 -21.86855 -21.31316 -19.83930 -18.63856 -18.47155 -17.79508 -17.17881 -17.10618 -16.96979 -16.88834 -16.76370 -16.59655 -16.32748 -16.27632 -15.74471 -15.29438 -15.27293 -14.74918 -14.70782 -14.45825 -14.19269 -14.11442 -13.81044 -13.62611 -13.28799 -13.16301 -12.94215 -12.87341 -12.80589 -12.69085 -12.54752 -12.43333 -12.22584 -12.15737 -12.02427 -11.82848 -11.76652 -11.46255 -11.34010 -11.13065 -10.62461 -10.49445 -10.43338 -9.89857 -9.72443 -9.12349 -8.24976 -6.31571 0.34660 0.48879 1.39260 1.41546 1.50228 1.94016 2.33581 2.37378 2.53568 2.77105 2.97961 3.10551 3.53998 3.57964 3.75169 3.88194 3.96029 4.07968 4.12895 4.19720 4.27181 4.30763 4.33118 4.38575 4.42396 4.44107 4.49981 4.57788 4.63466 4.72163 4.73348 4.75423 4.79635 4.84671 4.92777 4.98064 5.02189 5.09567 5.12285 5.18305 5.22551 5.28485 5.30408 5.33945 5.52022 5.60284 5.70250 5.74777 5.80823 6.07297 6.26022 6.46049 6.72546 6.85773 7.34850 7.56060 8.86809 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.009239 B = 0.003372 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3029.918840 B = 8301.388411 C =10481.368273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.331 6.331 3 C 0.116 3.884 4 C -0.214 4.214 5 C -0.094 4.094 6 C -0.162 4.162 7 C -0.037 4.037 8 C -0.069 4.069 9 C -0.052 4.052 10 C 0.130 3.870 11 N -0.717 5.717 12 C 0.520 3.480 13 O -0.587 6.587 14 C 0.010 3.990 15 C -0.536 4.536 16 H 0.053 0.947 17 C 0.012 3.988 18 N -0.923 5.923 19 Si 0.960 3.040 20 H -0.273 1.273 21 H -0.274 1.274 22 H -0.273 1.273 23 C -0.134 4.134 24 C 0.052 3.948 25 O -0.394 6.394 26 C 0.054 3.946 27 C -0.140 4.140 28 C -0.149 4.149 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.121 0.879 32 H 0.142 0.858 33 H 0.123 0.877 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.047 0.953 38 H 0.051 0.949 39 H 0.408 0.592 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.267 0.733 43 H 0.076 0.924 44 H 0.096 0.904 45 H 0.109 0.891 46 H 0.037 0.963 47 H 0.108 0.892 48 H 0.033 0.967 49 H 0.097 0.903 50 H 0.081 0.919 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.118 -24.572 -3.696 25.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.245 6.245 3 C 0.071 3.929 4 C -0.233 4.233 5 C -0.112 4.112 6 C -0.180 4.180 7 C -0.037 4.037 8 C -0.106 4.106 9 C -0.053 4.053 10 C 0.006 3.994 11 N -0.372 5.372 12 C 0.309 3.691 13 O -0.467 6.467 14 C -0.030 4.030 15 C -0.574 4.574 16 H 0.071 0.929 17 C -0.187 4.187 18 N -0.563 5.563 19 Si 0.785 3.215 20 H -0.199 1.199 21 H -0.199 1.199 22 H -0.199 1.199 23 C -0.172 4.172 24 C -0.024 4.024 25 O -0.313 6.313 26 C -0.022 4.022 27 C -0.177 4.177 28 C -0.168 4.168 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.139 0.861 32 H 0.160 0.840 33 H 0.141 0.859 34 H 0.125 0.875 35 H 0.098 0.902 36 H 0.124 0.876 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.245 0.755 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.114 0.886 45 H 0.127 0.873 46 H 0.055 0.945 47 H 0.126 0.874 48 H 0.052 0.948 49 H 0.116 0.884 50 H 0.099 0.901 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.330 -24.731 -3.030 25.289 hybrid contribution -0.748 1.760 0.051 1.913 sum -5.077 -22.971 -2.979 23.713 Atomic orbital electron populations 1.23306 0.76785 1.05492 1.01956 1.86033 1.23133 1.26552 1.88765 1.19147 0.92738 0.84370 0.96684 1.21375 1.00886 0.91936 1.09104 1.21110 0.94883 0.97754 0.97424 1.21121 0.94299 0.98476 1.04143 1.19629 0.96121 0.91580 0.96338 1.20746 0.89807 1.04659 0.95437 1.20714 0.95768 0.93696 0.95089 1.21426 0.99013 0.83630 0.95332 1.45983 1.55792 1.04757 1.30640 1.21392 0.77872 0.85810 0.84059 1.90519 1.40309 1.87862 1.27969 1.19049 0.97963 0.89668 0.96285 1.21330 1.33099 0.91494 1.11492 0.92908 1.25732 0.95389 1.01712 0.95817 1.70012 1.39595 1.23778 1.22902 0.85580 0.78880 0.78331 0.78729 1.19879 1.19857 1.19862 1.22250 1.01585 0.97153 0.96224 1.22768 0.80737 1.02293 0.96627 1.87894 1.21813 1.41398 1.80174 1.22676 1.00353 0.86627 0.92546 1.22239 0.93440 1.04351 0.97708 1.20442 0.91281 0.98334 1.06729 0.92253 0.92011 0.86112 0.84015 0.85929 0.87497 0.90243 0.87648 0.93467 0.93087 0.75489 0.94057 0.94061 0.92417 0.90568 0.88561 0.87253 0.94511 0.87445 0.94826 0.88426 0.90076 0.83645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.33 -6.41 10.50 -92.43 -0.97 -7.38 16 3 C 0.12 2.52 6.69 22.51 0.15 2.67 16 4 C -0.21 -4.75 9.04 22.37 0.20 -4.55 16 5 C -0.09 -2.43 10.04 22.25 0.22 -2.20 16 6 C -0.16 -4.39 7.91 22.28 0.18 -4.21 16 7 C -0.04 -0.80 4.01 -19.88 -0.08 -0.88 16 8 C -0.07 -1.23 4.28 29.85 0.13 -1.10 16 9 C -0.05 -1.01 0.30 -52.06 -0.02 -1.03 16 10 C 0.13 3.69 3.39 86.38 0.29 3.98 16 11 N -0.72 -23.14 4.30 -463.05 -1.99 -25.13 16 12 C 0.52 23.45 7.82 87.66 0.69 24.14 16 13 O -0.59 -31.24 15.46 -3.03 -0.05 -31.29 16 14 C 0.01 0.50 5.46 29.10 0.16 0.66 16 15 C -0.54 -31.64 8.92 25.60 0.23 -31.41 16 16 H 0.05 3.29 6.75 -2.92 -0.02 3.27 16 17 C 0.01 0.70 5.46 84.66 0.46 1.17 16 18 N -0.92 -53.84 13.29 21.45 0.28 -53.56 16 19 Si 0.96 45.52 29.54 68.60 2.03 47.54 16 20 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 21 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 23 C -0.13 -2.36 4.25 30.75 0.13 -2.23 16 24 C 0.05 1.05 6.57 72.08 0.47 1.52 16 25 O -0.39 -8.94 10.77 -148.98 -1.60 -10.54 16 26 C 0.05 1.14 6.57 72.01 0.47 1.62 16 27 C -0.14 -2.44 4.80 30.69 0.15 -2.29 16 28 C -0.15 -3.05 7.93 22.37 0.18 -2.88 16 29 H 0.06 0.66 7.66 -2.39 -0.02 0.64 16 30 H 0.06 0.65 7.66 -2.38 -0.02 0.63 16 31 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.14 2.48 6.30 -2.91 -0.02 2.46 16 33 H 0.12 3.08 8.06 -2.91 -0.02 3.06 16 34 H 0.11 3.31 7.38 -2.91 -0.02 3.29 16 35 H 0.08 1.44 6.73 -2.39 -0.02 1.42 16 36 H 0.11 1.36 8.08 -2.39 -0.02 1.34 16 37 H 0.05 1.51 5.01 -2.38 -0.01 1.50 16 38 H 0.05 1.66 6.26 -2.39 -0.01 1.64 16 39 H 0.41 10.86 6.18 -92.71 -0.57 10.29 16 40 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.27 14.65 8.31 -92.70 -0.77 13.88 16 43 H 0.08 1.44 6.43 -2.39 -0.02 1.43 16 44 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 45 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.04 0.86 6.62 -2.39 -0.02 0.84 16 47 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 48 H 0.03 0.86 6.58 -2.39 -0.02 0.84 16 49 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 50 H 0.08 1.40 6.90 -2.39 -0.02 1.38 16 51 H 0.15 2.40 8.04 -2.91 -0.02 2.37 16 Total: -1.00 -73.30 394.34 3.20 -70.10 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: 0.37 Total: 25.95 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: 5.13 Total: -15.69 kcal Atomic # 7 Polarization: -76.98 SS G_CDS: -1.70 Total: -78.69 kcal Atomic # 8 Polarization: -46.59 SS G_CDS: -2.62 Total: -49.21 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Total: -73.30 3.20 -70.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143205286.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.265 kcal (2) G-P(sol) polarization free energy of solvation -73.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds