Wall clock time and date at job start Wed Apr 1 2020 05:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34232 * 116.99878 * 2 1 4 4 O 1.20825 * 120.00049 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99727 * 180.02562 * 3 2 1 6 6 H 1.09005 * 109.47237 * 304.99525 * 5 3 2 7 7 O 1.42904 * 109.47093 * 185.00012 * 5 3 2 8 8 C 1.52994 * 109.47609 * 65.00083 * 5 3 2 9 9 H 1.09004 * 109.46782 * 300.00320 * 8 5 3 10 10 N 1.46904 * 109.47157 * 59.99575 * 8 5 3 11 11 C 1.46891 * 111.00241 * 205.00165 * 10 8 5 12 12 C 1.52995 * 109.47642 * 274.99935 * 11 10 8 13 13 C 1.52997 * 109.47727 * 179.97438 * 12 11 10 14 14 C 1.53003 * 109.47123 * 60.00085 * 13 12 11 15 15 C 1.50700 * 109.47360 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99869 * 119.99578 * 15 14 13 17 17 C 1.37878 * 119.99413 * 300.00210 * 15 14 13 18 18 N 1.31512 * 120.00552 * 359.97438 * 17 15 14 19 19 Si 1.86809 * 119.99377 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47148 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.46848 * 119.99750 * 19 17 15 22 22 H 1.48500 * 109.46968 * 239.99944 * 19 17 15 23 23 C 1.53004 * 109.46905 * 300.00455 * 14 13 12 24 24 C 1.52997 * 109.47242 * 59.99724 * 23 14 13 25 25 C 1.50695 * 109.47609 * 179.97438 * 8 5 3 26 26 C 1.38241 * 119.99695 * 279.72529 * 25 8 5 27 27 C 1.38233 * 119.99702 * 179.78500 * 26 25 8 28 28 C 1.38234 * 120.00237 * 0.44585 * 27 26 25 29 29 C 1.38237 * 119.99960 * 359.80729 * 28 27 26 30 30 C 1.38229 * 120.00413 * 100.00019 * 25 8 5 31 31 H 1.09001 * 109.47157 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47122 * 299.99817 * 1 2 3 33 33 H 1.09000 * 109.47070 * 59.99842 * 1 2 3 34 34 H 0.96700 * 113.99991 * 300.00505 * 7 5 3 35 35 H 1.00903 * 110.99850 * 328.96275 * 10 8 5 36 36 H 1.08997 * 109.47237 * 35.00306 * 11 10 8 37 37 H 1.08997 * 109.47108 * 300.00451 * 12 11 10 38 38 H 1.09004 * 109.46799 * 59.99846 * 12 11 10 39 39 H 1.08999 * 109.46746 * 300.00368 * 13 12 11 40 40 H 1.08999 * 109.47310 * 180.02562 * 13 12 11 41 41 H 1.08997 * 109.46772 * 60.00054 * 14 13 12 42 42 H 0.97005 * 119.99802 * 180.02562 * 18 17 15 43 43 H 1.08997 * 109.47078 * 299.99412 * 23 14 13 44 44 H 1.08997 * 109.46582 * 179.97438 * 23 14 13 45 45 H 1.08999 * 109.46951 * 179.97438 * 24 23 14 46 46 H 1.08999 * 109.46833 * 59.99913 * 24 23 14 47 47 H 1.07996 * 120.00096 * 359.97438 * 26 25 8 48 48 H 1.08003 * 119.99923 * 180.28008 * 27 26 25 49 49 H 1.08004 * 120.00279 * 179.83768 * 28 27 26 50 50 H 1.07997 * 120.00535 * 179.97438 * 29 28 27 51 51 H 1.08004 * 119.99819 * 359.97438 * 30 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9604 0.7051 0.8410 7 8 3.9718 2.6401 0.1170 8 6 4.1071 0.6931 -1.3082 9 1 3.7977 -0.3483 -1.3979 10 7 3.5761 1.4610 -2.4424 11 6 3.5554 0.6475 -3.6653 12 6 4.9241 0.7144 -4.3457 13 6 4.9028 -0.1334 -5.6191 14 6 3.8330 0.4041 -6.5718 15 6 3.8116 -0.4313 -7.8259 16 1 2.9117 -0.9570 -8.1091 17 6 4.9409 -0.5244 -8.6114 18 7 6.0365 0.1161 -8.2667 19 14 4.9140 -1.5594 -10.1664 20 1 3.5715 -2.1727 -10.3297 21 1 5.2115 -0.6984 -11.3391 22 1 5.9380 -2.6302 -10.0659 23 6 2.4642 0.3372 -5.8915 24 6 2.4856 1.1850 -4.6180 25 6 5.6119 0.7725 -1.3090 26 6 6.2411 1.9623 -1.6247 27 6 7.6214 2.0363 -1.6212 28 6 8.3728 0.9182 -1.3110 29 6 7.7438 -0.2729 -1.0004 30 6 6.3633 -0.3458 -0.9997 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 3.6561 3.2073 -0.5997 35 1 2.6582 1.8249 -2.2346 36 1 3.3269 -0.3871 -3.4097 37 1 5.1526 1.7491 -4.6013 38 1 5.6862 0.3311 -3.6671 39 1 4.6746 -1.1679 -5.3630 40 1 5.8781 -0.0860 -6.1035 41 1 4.0613 1.4387 -6.8278 42 1 6.8308 0.0509 -8.8196 43 1 2.2359 -0.6974 -5.6354 44 1 1.7022 0.7205 -6.5700 45 1 1.5103 1.1377 -4.1336 46 1 2.7139 2.2196 -4.8742 47 1 5.6542 2.8347 -1.8711 48 1 8.1129 2.9670 -1.8634 49 1 9.4513 0.9754 -1.3107 50 1 8.3307 -1.1466 -0.7584 51 1 5.8718 -1.2764 -0.7570 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173327499.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:56:07 Heat of formation + Delta-G solvation = -137.696789 kcal Electronic energy + Delta-G solvation = -32320.723949 eV Core-core repulsion = 28183.613437 eV Total energy + Delta-G solvation = -4137.110512 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.05437 -40.58685 -39.29441 -38.44044 -37.35945 -36.05759 -34.37802 -32.38939 -31.61272 -31.39849 -30.69529 -29.55238 -28.01657 -26.21059 -25.05036 -23.40034 -23.20640 -22.33006 -22.23181 -21.34946 -20.41199 -19.26484 -18.56169 -18.37909 -17.95186 -17.47618 -17.07474 -16.78167 -16.55398 -16.05779 -15.81358 -15.43938 -15.24666 -15.10719 -14.74774 -14.67972 -14.47153 -14.18930 -14.02504 -13.93618 -13.88341 -13.51239 -13.18370 -13.12632 -12.96655 -12.91867 -12.78497 -12.56313 -12.34509 -12.22034 -11.99083 -11.93451 -11.87560 -11.80327 -11.72832 -11.64105 -11.16055 -11.11357 -10.73751 -10.51583 -10.35137 -9.64933 -9.59421 -9.39126 -8.04939 -6.18992 0.52085 0.70618 0.93326 1.39472 1.41685 1.52372 1.55617 2.44396 2.75654 2.98358 3.20785 3.22738 3.58344 3.64327 3.91006 4.02648 4.04094 4.15135 4.23820 4.24891 4.29818 4.31377 4.39028 4.44660 4.47492 4.59496 4.68445 4.70159 4.77695 4.85323 4.86618 4.90642 4.99077 5.01443 5.18330 5.19214 5.22740 5.27504 5.35167 5.42620 5.53473 5.62767 5.69627 5.72930 5.78869 5.80628 6.02479 6.07501 6.17074 6.26538 6.31103 6.34552 6.44459 6.59376 6.94442 7.49010 8.98721 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.010148 B = 0.003608 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.558659 B = 7757.772404 C = 9707.065416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.358 6.358 3 C 0.431 3.569 4 O -0.520 6.520 5 C 0.133 3.867 6 H 0.161 0.839 7 O -0.526 6.526 8 C 0.107 3.893 9 H 0.080 0.920 10 N -0.676 5.676 11 C 0.110 3.890 12 C -0.083 4.083 13 C -0.098 4.098 14 C 0.046 3.954 15 C -0.534 4.534 16 H 0.050 0.950 17 C 0.013 3.987 18 N -0.915 5.915 19 Si 0.948 3.052 20 H -0.267 1.267 21 H -0.282 1.282 22 H -0.281 1.281 23 C -0.098 4.098 24 C -0.108 4.108 25 C -0.076 4.076 26 C -0.077 4.077 27 C -0.143 4.143 28 C -0.128 4.128 29 C -0.134 4.134 30 C -0.125 4.125 31 H 0.130 0.870 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.392 0.608 35 H 0.339 0.661 36 H 0.044 0.956 37 H 0.039 0.961 38 H 0.053 0.947 39 H 0.023 0.977 40 H 0.054 0.946 41 H -0.010 1.010 42 H 0.258 0.742 43 H 0.048 0.952 44 H 0.046 0.954 45 H 0.069 0.931 46 H 0.058 0.942 47 H 0.123 0.877 48 H 0.126 0.874 49 H 0.133 0.867 50 H 0.137 0.863 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.116 -0.529 20.866 21.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.274 6.274 3 C 0.274 3.726 4 O -0.408 6.408 5 C 0.071 3.929 6 H 0.178 0.822 7 O -0.333 6.333 8 C -0.003 4.003 9 H 0.098 0.902 10 N -0.309 5.309 11 C 0.001 3.999 12 C -0.121 4.121 13 C -0.137 4.137 14 C 0.028 3.972 15 C -0.572 4.572 16 H 0.068 0.932 17 C -0.185 4.185 18 N -0.555 5.555 19 Si 0.774 3.226 20 H -0.192 1.192 21 H -0.208 1.208 22 H -0.207 1.207 23 C -0.136 4.136 24 C -0.146 4.146 25 C -0.076 4.076 26 C -0.095 4.095 27 C -0.161 4.161 28 C -0.146 4.146 29 C -0.152 4.152 30 C -0.143 4.143 31 H 0.148 0.852 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.243 0.757 35 H 0.159 0.841 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.041 0.959 40 H 0.072 0.928 41 H 0.008 0.992 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.087 0.913 46 H 0.077 0.923 47 H 0.141 0.859 48 H 0.144 0.856 49 H 0.151 0.849 50 H 0.155 0.845 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.325 -0.122 21.204 21.463 hybrid contribution -0.949 -0.633 -1.643 2.000 sum -4.273 -0.755 19.560 20.036 Atomic orbital electron populations 1.23589 0.74623 1.05827 1.02666 1.86531 1.25146 1.32478 1.83219 1.25154 0.93602 0.81865 0.72026 1.90700 1.67369 1.37097 1.45662 1.21802 0.84198 0.86389 1.00478 0.82221 1.86621 1.75769 1.17549 1.53346 1.21062 0.92733 0.97518 0.88974 0.90182 1.60429 1.29730 1.38266 1.02522 1.21391 0.95632 0.94220 0.88640 1.21402 0.95976 0.98997 0.95708 1.21376 1.01592 0.96306 0.94418 1.18618 0.91660 0.94244 0.92691 1.21662 0.97321 1.29742 1.08489 0.93205 1.25710 0.95394 0.96822 1.00604 1.70042 1.02446 1.43791 1.39203 0.85655 0.78146 0.78764 0.79986 1.19175 1.20806 1.20676 1.21440 0.98022 0.98588 0.95553 1.21627 0.97582 0.99727 0.95677 1.19439 0.93335 0.94138 1.00722 1.21003 0.94114 0.97941 0.96439 1.21399 0.94468 0.99341 1.00938 1.21402 1.00637 0.93244 0.99360 1.21311 0.94705 0.98396 1.00757 1.21251 0.94436 0.98220 1.00392 0.85169 0.91511 0.92034 0.75716 0.84127 0.93821 0.94190 0.92861 0.95852 0.92789 0.99203 0.93249 0.93308 0.93518 0.91276 0.92338 0.85867 0.85585 0.84944 0.84498 0.84688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.36 -6.51 10.56 -51.44 -0.54 -7.05 16 3 C 0.43 8.84 5.94 71.23 0.42 9.27 16 4 O -0.52 -13.21 15.99 28.39 0.45 -12.76 16 5 C 0.13 2.47 3.29 29.84 0.10 2.57 16 6 H 0.16 2.35 8.14 -2.38 -0.02 2.33 16 7 O -0.53 -11.06 11.67 -129.95 -1.52 -12.58 16 8 C 0.11 2.26 2.11 44.16 0.09 2.36 16 9 H 0.08 1.65 7.29 -2.38 -0.02 1.63 16 10 N -0.68 -16.42 4.84 -473.34 -2.29 -18.71 16 11 C 0.11 3.38 2.49 44.92 0.11 3.49 16 12 C -0.08 -3.15 4.85 30.59 0.15 -3.00 16 13 C -0.10 -4.66 4.98 30.59 0.15 -4.51 16 14 C 0.05 2.32 2.10 -11.54 -0.02 2.29 16 15 C -0.53 -29.67 8.56 25.60 0.22 -29.45 16 16 H 0.05 2.73 7.74 -2.91 -0.02 2.70 16 17 C 0.01 0.74 5.30 84.66 0.45 1.18 16 18 N -0.92 -53.59 11.32 21.45 0.24 -53.35 16 19 Si 0.95 44.00 29.54 68.60 2.03 46.03 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 21 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 23 C -0.10 -3.93 5.14 30.59 0.16 -3.77 16 24 C -0.11 -3.49 5.19 30.59 0.16 -3.33 16 25 C -0.08 -1.78 2.86 -19.87 -0.06 -1.84 16 26 C -0.08 -1.96 7.72 22.27 0.17 -1.78 16 27 C -0.14 -3.54 10.05 22.27 0.22 -3.32 16 28 C -0.13 -2.93 10.05 22.27 0.22 -2.71 16 29 C -0.13 -2.92 10.05 22.27 0.22 -2.70 16 30 C -0.12 -2.76 9.65 22.27 0.21 -2.55 16 31 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.07 0.87 8.13 -2.38 -0.02 0.85 16 33 H 0.06 0.90 8.13 -2.39 -0.02 0.88 16 34 H 0.39 7.71 8.17 -74.06 -0.61 7.10 16 35 H 0.34 7.78 6.62 -89.69 -0.59 7.18 16 36 H 0.04 1.35 7.43 -2.39 -0.02 1.33 16 37 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.05 1.97 5.93 -2.38 -0.01 1.95 16 39 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.05 2.97 6.07 -2.39 -0.01 2.96 16 41 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 42 H 0.26 14.42 8.31 -92.70 -0.77 13.65 16 43 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.07 1.86 8.12 -2.39 -0.02 1.84 16 46 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.12 3.17 7.46 -2.91 -0.02 3.15 16 48 H 0.13 2.76 8.06 -2.91 -0.02 2.74 16 49 H 0.13 2.47 8.06 -2.91 -0.02 2.44 16 50 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 51 H 0.14 2.41 8.04 -2.91 -0.02 2.39 16 Total: -1.00 -66.25 402.88 2.30 -63.96 By element: Atomic # 1 Polarization: 30.99 SS G_CDS: -0.26 Total: 30.73 kcal Atomic # 6 Polarization: -40.44 SS G_CDS: 4.18 Total: -36.26 kcal Atomic # 7 Polarization: -70.01 SS G_CDS: -2.05 Total: -72.06 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -1.61 Total: -32.39 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -66.25 2.30 -63.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173327499.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.739 kcal (2) G-P(sol) polarization free energy of solvation -66.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds