Wall clock time and date at job start Wed Apr 1 2020 05:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00375 * 2 1 4 4 H 1.48501 * 109.47148 * 270.00500 * 3 2 1 5 5 H 1.48499 * 109.47118 * 30.00324 * 3 2 1 6 6 H 1.48500 * 109.47503 * 150.00498 * 3 2 1 7 7 C 1.38817 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99789 * 359.97438 * 7 2 1 9 9 N 1.36935 * 120.00201 * 179.97438 * 7 2 1 10 10 C 1.46499 * 120.00076 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47133 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47077 * 304.99954 * 11 10 9 13 13 C 1.54289 * 109.53657 * 185.02079 * 11 10 9 14 14 N 1.45121 * 109.82565 * 172.11349 * 13 11 10 15 15 C 1.34773 * 118.75853 * 269.42083 * 14 13 11 16 16 O 1.21691 * 120.00371 * 177.11154 * 15 14 13 17 17 C 1.46686 * 119.99923 * 357.38700 * 15 14 13 18 18 C 1.38049 * 126.20279 * 201.04389 * 17 15 14 19 19 C 1.39255 * 106.97309 * 179.83963 * 18 17 15 20 20 C 1.35965 * 108.03935 * 0.46860 * 19 18 17 21 21 N 1.35115 * 108.76428 * 359.65826 * 20 19 18 22 22 H 0.96995 * 125.68640 * 180.08302 * 21 20 19 23 23 C 1.51015 * 123.85233 * 179.57811 * 20 19 18 24 24 C 1.53313 * 108.41515 * 343.37913 * 23 20 19 25 25 C 1.53102 * 109.53813 * 50.14528 * 24 23 20 26 26 C 1.50840 * 127.70106 * 180.29164 * 19 18 17 27 27 C 1.47514 * 122.48621 * 89.13990 * 14 13 11 28 28 C 1.53569 * 111.02686 * 318.62755 * 27 14 13 29 29 C 1.51534 * 109.58767 * 320.02599 * 28 27 14 30 30 O 1.38012 * 109.47378 * 64.99890 * 11 10 9 31 31 H 0.97008 * 119.99529 * 359.97438 * 1 2 3 32 32 H 0.96996 * 119.99765 * 0.02562 * 9 7 2 33 33 H 1.09002 * 109.47306 * 59.99991 * 10 9 7 34 34 H 1.09003 * 109.46739 * 300.00062 * 10 9 7 35 35 H 1.08994 * 109.21990 * 52.06174 * 13 11 10 36 36 H 1.08996 * 109.40923 * 292.27683 * 13 11 10 37 37 H 1.07999 * 126.51671 * 359.97438 * 18 17 15 38 38 H 1.08995 * 109.67654 * 103.10551 * 23 20 19 39 39 H 1.09001 * 109.67671 * 223.64046 * 23 20 19 40 40 H 1.09004 * 109.45810 * 290.12598 * 24 23 20 41 41 H 1.09004 * 109.45430 * 170.16138 * 24 23 20 42 42 H 1.08994 * 109.48187 * 169.60109 * 25 24 23 43 43 H 1.09004 * 109.47757 * 49.58886 * 25 24 23 44 44 H 1.09000 * 109.67920 * 283.47211 * 26 19 18 45 45 H 1.08988 * 109.68134 * 43.99386 * 26 19 18 46 46 H 1.08997 * 109.16479 * 79.02801 * 27 14 13 47 47 H 1.08997 * 109.16716 * 198.23380 * 27 14 13 48 48 H 1.09009 * 109.45071 * 80.06083 * 28 27 14 49 49 H 1.08999 * 109.45452 * 199.98298 * 28 27 14 50 50 H 1.08997 * 109.58835 * 211.18345 * 29 28 27 51 51 H 1.08997 * 109.58426 * 331.46936 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2023 -0.0011 10 6 4.1120 -2.4710 -0.0022 11 6 5.6163 -2.1915 -0.0020 12 1 5.8658 -1.5449 -0.8432 13 6 6.3881 -3.5213 -0.1304 14 7 7.8021 -3.2535 -0.3178 15 6 8.2769 -3.1249 -1.5725 16 8 9.4479 -2.8482 -1.7546 17 6 7.3809 -3.3124 -2.7186 18 6 7.7619 -3.6151 -4.0105 19 6 6.5965 -3.7051 -4.7675 20 6 5.5416 -3.4511 -3.9482 21 7 6.0065 -3.2125 -2.7022 22 1 5.4635 -3.0056 -1.9256 23 6 4.1026 -3.4465 -4.4064 24 6 4.0818 -3.3502 -5.9364 25 6 5.0180 -4.4069 -6.5287 26 6 6.4734 -4.0208 -6.2374 27 6 8.7381 -3.1108 0.8134 28 6 8.1070 -2.2954 1.9514 29 6 7.3112 -1.1440 1.3706 30 8 5.9682 -1.5679 1.1779 31 1 -0.4850 0.8402 0.0004 32 1 3.8646 -0.3623 -0.0007 33 1 3.8483 -3.0420 -0.8925 34 1 3.8490 -3.0432 0.8875 35 1 6.0069 -4.0761 -0.9876 36 1 6.2472 -4.1109 0.7754 37 1 8.7717 -3.7575 -4.3661 38 1 3.6138 -4.3679 -4.0901 39 1 3.5836 -2.5893 -3.9775 40 1 4.4142 -2.3581 -6.2423 41 1 3.0674 -3.5205 -6.2971 42 1 4.8661 -4.4639 -7.6065 43 1 4.8024 -5.3763 -6.0795 44 1 6.7453 -3.1440 -6.8251 45 1 7.1320 -4.8514 -6.4908 46 1 9.0025 -4.1004 1.1860 47 1 9.6408 -2.6059 0.4694 48 1 7.4453 -2.9367 2.5338 49 1 8.8932 -1.9041 2.5970 50 1 7.3329 -0.3002 2.0602 51 1 7.7434 -0.8463 0.4153 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201800626.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:52 Heat of formation + Delta-G solvation = -4.305432 kcal Electronic energy + Delta-G solvation = -32670.902929 eV Core-core repulsion = 28571.869451 eV Total energy + Delta-G solvation = -4099.033478 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.06073 -40.28545 -38.67413 -36.49244 -35.60199 -35.20167 -33.40681 -32.16330 -31.42096 -29.62712 -29.37716 -28.55077 -26.95343 -25.63081 -24.08334 -22.69278 -22.36072 -21.67926 -21.36683 -20.70111 -19.80990 -18.80301 -17.87256 -17.75879 -16.88190 -16.76965 -16.07178 -15.90872 -15.33064 -14.98008 -14.79586 -14.48337 -14.39671 -13.93028 -13.79822 -13.67920 -13.60577 -13.38662 -13.08928 -13.04044 -12.81993 -12.64334 -12.54293 -12.41326 -12.36317 -12.17606 -11.83016 -11.56590 -11.33346 -11.01841 -10.95735 -10.91750 -10.78980 -10.63593 -10.55287 -10.23788 -10.12134 -9.73198 -9.68908 -9.03853 -8.93977 -8.73322 -7.95057 -7.37778 -5.86418 -3.23629 1.42593 2.58178 2.65493 3.01607 3.30058 3.32399 3.37934 3.40513 3.55636 4.27434 4.45875 4.52114 4.61180 4.62641 4.64167 4.77641 4.83560 4.83742 4.92004 5.02755 5.06153 5.20457 5.23476 5.30781 5.41285 5.42496 5.43185 5.47701 5.49845 5.52471 5.55645 5.58910 5.65891 5.76195 5.77521 5.88692 5.90343 5.93032 6.01506 6.06181 6.10987 6.19458 6.25254 6.27140 6.35826 6.80761 6.92218 7.10405 7.34887 7.58607 7.85567 7.95439 8.31384 9.08822 9.81371 9.99963 11.31200 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007521 B = 0.005025 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3721.912288 B = 5571.262741 C = 8571.086067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.012 3.988 3 Si 0.879 3.121 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.251 4.251 8 H 0.092 0.908 9 N -0.746 5.746 10 C 0.164 3.836 11 C 0.066 3.934 12 H 0.049 0.951 13 C 0.049 3.951 14 N -0.609 5.609 15 C 0.589 3.411 16 O -0.533 6.533 17 C -0.070 4.070 18 C -0.095 4.095 19 C -0.181 4.181 20 C 0.061 3.939 21 N -0.537 5.537 22 H 0.424 0.576 23 C -0.062 4.062 24 C -0.112 4.112 25 C -0.119 4.119 26 C -0.045 4.045 27 C 0.111 3.889 28 C -0.166 4.166 29 C 0.069 3.931 30 O -0.362 6.362 31 H 0.261 0.739 32 H 0.365 0.635 33 H 0.034 0.966 34 H 0.047 0.953 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.144 0.856 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.094 0.906 48 H 0.082 0.918 49 H 0.088 0.912 50 H 0.094 0.906 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.664 -9.949 -6.331 19.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.185 4.185 3 Si 0.709 3.291 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.200 1.200 7 C -0.380 4.380 8 H 0.110 0.890 9 N -0.392 5.392 10 C 0.035 3.965 11 C 0.005 3.995 12 H 0.067 0.933 13 C -0.076 4.076 14 N -0.342 5.342 15 C 0.379 3.621 16 O -0.410 6.410 17 C -0.182 4.182 18 C -0.122 4.122 19 C -0.186 4.186 20 C -0.058 4.058 21 N -0.141 5.141 22 H 0.272 0.728 23 C -0.100 4.100 24 C -0.150 4.150 25 C -0.157 4.157 26 C -0.082 4.082 27 C -0.010 4.010 28 C -0.204 4.204 29 C -0.007 4.007 30 O -0.280 6.280 31 H 0.071 0.929 32 H 0.199 0.801 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.112 0.888 36 H 0.119 0.881 37 H 0.162 0.838 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.112 0.888 48 H 0.101 0.899 49 H 0.107 0.893 50 H 0.112 0.888 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 15.865 -9.811 -6.048 19.609 hybrid contribution 0.510 1.278 0.413 1.437 sum 16.375 -8.533 -5.636 19.306 Atomic orbital electron populations 1.69695 1.05078 1.26007 1.56849 1.24627 0.95175 0.97166 1.01491 0.86618 0.79564 0.85019 0.77871 1.21046 1.21519 1.20014 1.18997 0.80192 0.94850 1.44006 0.89035 1.42550 1.04071 1.01623 1.90978 1.20672 0.85356 0.90828 0.99599 1.22539 0.96559 0.91977 0.88387 0.93318 1.22926 0.80708 0.99018 1.04925 1.47776 1.08686 1.71598 1.06122 1.17277 0.86868 0.76376 0.81593 1.90798 1.16721 1.48454 1.84980 1.20196 0.82166 1.19583 0.96217 1.20916 0.98597 1.02549 0.90123 1.19262 0.91603 1.11593 0.96185 1.20698 0.96613 1.04043 0.84452 1.43158 1.06538 1.53666 1.10769 0.72826 1.20418 0.89253 1.03642 0.96678 1.21510 1.00042 0.99968 0.93479 1.21602 0.94616 0.99022 1.00435 1.20036 0.96588 1.00835 0.90769 1.21859 0.92673 1.00696 0.85781 1.22496 1.01014 0.98797 0.98072 1.22232 0.82086 0.96010 1.00411 1.86445 1.27717 1.76571 1.37238 0.92904 0.80125 0.94870 0.93490 0.88809 0.88143 0.83781 0.89873 0.89576 0.91381 0.90917 0.91650 0.91720 0.91358 0.91296 0.91340 0.88769 0.89893 0.89345 0.88820 0.93096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.41 13.97 55.49 0.78 -27.64 16 2 C 0.01 0.34 5.50 -17.43 -0.10 0.25 16 3 Si 0.88 21.87 27.73 -169.99 -4.71 17.16 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.27 -6.56 6.52 56.52 0.37 -6.19 16 7 C -0.25 -6.83 10.47 -15.06 -0.16 -6.98 16 8 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 9 N -0.75 -17.09 5.34 -59.91 -0.32 -17.41 16 10 C 0.16 2.91 5.70 -4.04 -0.02 2.89 16 11 C 0.07 1.01 1.67 -26.06 -0.04 0.96 16 12 H 0.05 0.80 7.30 -51.93 -0.38 0.43 16 13 C 0.05 0.61 4.38 -4.11 -0.02 0.60 16 14 N -0.61 -7.82 2.20 -174.35 -0.38 -8.21 16 15 C 0.59 8.90 7.58 -12.85 -0.10 8.80 16 16 O -0.53 -9.22 16.24 5.20 0.08 -9.13 16 17 C -0.07 -1.02 6.43 -81.84 -0.53 -1.55 16 18 C -0.10 -1.31 10.69 -39.27 -0.42 -1.73 16 19 C -0.18 -2.29 5.91 -104.99 -0.62 -2.91 16 20 C 0.06 0.81 7.02 -81.81 -0.57 0.23 16 21 N -0.54 -7.47 4.56 -5.50 -0.03 -7.49 16 22 H 0.42 5.87 2.50 -40.82 -0.10 5.77 16 23 C -0.06 -0.72 6.30 -27.57 -0.17 -0.89 16 24 C -0.11 -1.09 5.89 -26.52 -0.16 -1.25 16 25 C -0.12 -1.04 5.90 -26.49 -0.16 -1.20 16 26 C -0.04 -0.44 6.28 -27.63 -0.17 -0.61 16 27 C 0.11 1.20 6.17 -3.19 -0.02 1.18 16 28 C -0.17 -1.63 5.78 -27.18 -0.16 -1.79 16 29 C 0.07 0.87 6.37 36.42 0.23 1.11 16 30 O -0.36 -5.73 9.38 -26.52 -0.25 -5.98 16 31 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 32 H 0.37 8.50 5.52 -40.82 -0.23 8.28 16 33 H 0.03 0.55 7.02 -51.93 -0.36 0.19 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 1.15 4.80 -51.93 -0.25 0.90 16 36 H 0.10 1.12 8.11 -51.93 -0.42 0.69 16 37 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.07 0.69 8.11 -51.93 -0.42 0.27 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.56 8.11 -51.93 -0.42 0.14 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.07 0.60 8.14 -51.94 -0.42 0.18 16 46 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.09 1.09 6.97 -51.93 -0.36 0.72 16 48 H 0.08 0.83 8.01 -51.92 -0.42 0.42 16 49 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 51 H 0.05 0.69 7.41 -51.93 -0.38 0.30 16 LS Contribution 387.93 15.07 5.85 5.85 Total: -1.00 -32.95 387.93 -10.16 -43.10 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -7.99 Total: 12.65 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -3.18 Total: -2.90 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: 0.05 Total: -60.75 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.16 Total: -15.11 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.71 Total: 17.16 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.95 -10.16 -43.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201800626.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.799 kcal (2) G-P(sol) polarization free energy of solvation -32.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds