Wall clock time and date at job start Wed Apr 1 2020 05:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 Si 1.63101 * 114.00236 * 2 1 4 4 C 1.86301 * 109.46953 * 299.99984 * 3 2 1 5 5 C 1.86299 * 109.47434 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47371 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.47207 * 179.97438 * 6 5 3 8 8 O 1.42895 * 109.47095 * 180.02562 * 7 6 5 9 9 C 1.42897 * 114.00346 * 180.02562 * 8 7 6 10 10 C 1.53000 * 109.47502 * 180.02562 * 9 8 7 11 11 H 1.08994 * 109.47212 * 54.99196 * 10 9 8 12 12 O 1.42900 * 109.46773 * 294.99383 * 10 9 8 13 13 C 1.52992 * 109.47156 * 174.99673 * 10 9 8 14 14 N 1.46900 * 109.47183 * 184.99543 * 13 10 9 15 15 C 1.47846 * 111.00020 * 290.12614 * 14 13 10 16 16 C 1.54908 * 104.89238 * 213.57993 * 15 14 13 17 17 C 1.55422 * 101.52379 * 37.06612 * 16 15 14 18 18 C 1.50698 * 110.69674 * 205.97506 * 17 16 15 19 19 N 1.27949 * 120.00158 * 88.62148 * 18 17 16 20 20 Si 1.86804 * 119.99994 * 268.62554 * 18 17 16 21 21 H 1.48498 * 109.46887 * 359.97438 * 20 18 17 22 22 H 1.48500 * 109.47139 * 119.99921 * 20 18 17 23 23 H 1.48496 * 109.47004 * 239.99585 * 20 18 17 24 24 C 1.47448 * 111.00041 * 169.28484 * 14 13 10 25 25 O 1.63103 * 109.47214 * 59.99774 * 3 2 1 26 26 C 1.42902 * 113.99634 * 60.00008 * 25 3 2 27 27 H 1.08999 * 109.47360 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47293 * 300.00296 * 1 2 3 29 29 H 1.09007 * 109.47067 * 60.00086 * 1 2 3 30 30 H 1.08998 * 109.47382 * 299.99583 * 4 3 2 31 31 H 1.09003 * 109.47212 * 60.00047 * 4 3 2 32 32 H 1.09008 * 109.47053 * 180.02562 * 4 3 2 33 33 H 1.09008 * 109.46956 * 60.00217 * 5 3 2 34 34 H 1.08997 * 109.47318 * 299.99892 * 5 3 2 35 35 H 1.08998 * 109.46624 * 60.00201 * 6 5 3 36 36 H 1.08997 * 109.46955 * 300.00291 * 6 5 3 37 37 H 1.09008 * 109.46853 * 60.00558 * 7 6 5 38 38 H 1.08988 * 109.47302 * 300.00622 * 7 6 5 39 39 H 1.08995 * 109.47345 * 59.99620 * 9 8 7 40 40 H 1.09007 * 109.46730 * 300.00004 * 9 8 7 41 41 H 0.96697 * 114.00349 * 300.00585 * 12 10 9 42 42 H 1.09009 * 109.47128 * 65.00075 * 13 10 9 43 43 H 1.09004 * 109.47619 * 304.99782 * 13 10 9 44 44 H 1.09002 * 110.37464 * 332.46590 * 15 14 13 45 45 H 1.08999 * 110.37318 * 94.69366 * 15 14 13 46 46 H 1.08998 * 110.98718 * 155.22204 * 16 15 14 47 47 H 1.08998 * 110.98705 * 279.03118 * 16 15 14 48 48 H 1.09005 * 110.84788 * 82.82423 * 17 16 15 49 49 H 0.96992 * 119.99735 * 180.02562 * 19 18 17 50 50 H 1.08999 * 109.88737 * 242.66366 * 24 14 13 51 51 H 1.09000 * 109.88899 * 3.85249 * 24 14 13 52 52 H 1.08999 * 109.47536 * 300.00216 * 26 25 3 53 53 H 1.08998 * 109.47279 * 60.00268 * 26 25 3 54 54 H 1.08997 * 109.46998 * 180.02562 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 14 2.0924 1.4900 0.0000 4 6 1.5427 2.4145 -1.5212 5 6 3.9496 1.3429 0.0008 6 6 4.5719 2.7406 0.0001 7 6 6.0971 2.6198 0.0014 8 8 6.6784 3.9252 0.0014 9 6 8.1073 3.9253 0.0020 10 6 8.6174 5.3678 0.0026 11 1 8.1823 5.9066 0.8443 12 8 8.2399 6.0069 -1.2185 13 6 10.1420 5.3695 0.1290 14 7 10.6218 6.7527 0.2499 15 6 10.4544 7.4848 -1.0237 16 6 11.6553 8.4615 -1.0822 17 6 12.7870 7.6001 -0.4554 18 6 13.8423 8.4780 0.1664 19 7 13.7276 8.8511 1.3849 20 14 15.3179 9.0217 -0.8420 21 1 15.2155 8.4587 -2.2123 22 1 15.3473 10.5045 -0.9164 23 1 16.5640 8.5336 -0.1985 24 6 12.0468 6.7867 0.6272 25 8 1.6111 2.2994 1.3317 26 6 1.9843 1.6716 2.5600 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 1.8643 1.8736 -2.4111 31 1 0.4561 2.5006 -1.5212 32 1 1.9864 3.4101 -1.5214 33 1 4.2716 0.8018 -0.8891 34 1 4.2709 0.8022 0.8910 35 1 4.2500 3.2820 0.8897 36 1 4.2506 3.2810 -0.8903 37 1 6.4194 2.0782 -0.8880 38 1 6.4180 2.0796 0.8919 39 1 8.4711 3.4113 -0.8876 40 1 8.4703 3.4116 0.8923 41 1 8.5924 5.5798 -2.0113 42 1 10.5806 4.9090 -0.7563 43 1 10.4340 4.8050 1.0146 44 1 10.4862 6.7934 -1.8658 45 1 9.5152 8.0378 -1.0229 46 1 11.8907 8.7295 -2.1122 47 1 11.4642 9.3516 -0.4828 48 1 13.2284 6.9379 -1.2003 49 1 14.4067 9.4165 1.7849 50 1 12.1620 7.2698 1.5975 51 1 12.4444 5.7726 0.6658 52 1 1.5400 0.6776 2.6097 53 1 3.0699 1.5872 2.6097 54 1 1.6274 2.2710 3.3975 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252240019.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:57:14 Heat of formation + Delta-G solvation = -209.651296 kcal Electronic energy + Delta-G solvation = -28653.773322 eV Core-core repulsion = 24555.784417 eV Total energy + Delta-G solvation = -4097.988905 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 348.209 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.57628 -39.32714 -37.94961 -37.82985 -37.41310 -36.15009 -34.49681 -33.07612 -30.58195 -29.75679 -29.09094 -27.58944 -27.17395 -26.79631 -25.63475 -23.61403 -22.95681 -22.25058 -21.83146 -20.20340 -18.26609 -18.11798 -17.72507 -17.66439 -17.21683 -17.08131 -16.75432 -16.24216 -16.15478 -16.02117 -15.98858 -15.52834 -15.46063 -14.94599 -14.86959 -14.80539 -14.58025 -14.35678 -14.20872 -13.69734 -13.60404 -13.45851 -13.32588 -13.18740 -13.10905 -12.90700 -12.72965 -12.57555 -12.36225 -12.29161 -12.19788 -11.98211 -11.96689 -11.85844 -11.72616 -11.66529 -11.62256 -11.25434 -11.21541 -10.83141 -10.76251 -10.58905 -10.39971 -9.87113 -9.13710 0.82701 1.11291 1.29376 1.47764 1.75901 1.87453 1.98484 2.03964 2.28927 2.51335 3.15471 3.48501 3.50867 3.73997 3.93779 4.00776 4.04889 4.07572 4.09486 4.19012 4.28596 4.35552 4.38559 4.41926 4.45482 4.46159 4.47500 4.53943 4.55529 4.58311 4.58470 4.62601 4.67367 4.68950 4.70111 4.76373 4.90312 4.97162 4.98949 5.01380 5.04044 5.08682 5.15255 5.17434 5.20691 5.28613 5.38724 5.41874 5.45845 5.65371 6.09114 6.13398 6.26366 6.84926 6.95183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.672 6.672 3 Si 1.490 2.510 4 C -0.533 4.533 5 C -0.482 4.482 6 C -0.106 4.106 7 C 0.059 3.941 8 O -0.404 6.404 9 C 0.032 3.968 10 C 0.121 3.879 11 H 0.088 0.912 12 O -0.563 6.563 13 C 0.028 3.972 14 N -0.544 5.544 15 C 0.057 3.943 16 C -0.118 4.118 17 C -0.086 4.086 18 C 0.003 3.997 19 N -0.652 5.652 20 Si 0.976 3.024 21 H -0.227 1.227 22 H -0.259 1.259 23 H -0.257 1.257 24 C 0.051 3.949 25 O -0.673 6.673 26 C 0.042 3.958 27 H 0.091 0.909 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.381 0.619 42 H 0.058 0.942 43 H 0.088 0.912 44 H 0.061 0.939 45 H 0.071 0.929 46 H 0.098 0.902 47 H 0.062 0.938 48 H 0.115 0.885 49 H 0.342 0.658 50 H 0.080 0.920 51 H 0.060 0.940 52 H 0.056 0.944 53 H 0.057 0.943 54 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.494 -4.132 -2.289 5.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.633 6.633 3 Si 1.573 2.427 4 C -0.634 4.634 5 C -0.561 4.561 6 C -0.144 4.144 7 C -0.017 4.017 8 O -0.324 6.324 9 C -0.046 4.046 10 C 0.061 3.939 11 H 0.106 0.894 12 O -0.370 6.370 13 C -0.101 4.101 14 N -0.268 5.268 15 C -0.071 4.071 16 C -0.157 4.157 17 C -0.106 4.106 18 C -0.245 4.245 19 N -0.266 5.266 20 Si 0.792 3.208 21 H -0.149 1.149 22 H -0.183 1.183 23 H -0.181 1.181 24 C -0.077 4.077 25 O -0.633 6.633 26 C -0.053 4.053 27 H 0.110 0.890 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.229 0.771 42 H 0.076 0.924 43 H 0.107 0.893 44 H 0.079 0.921 45 H 0.090 0.910 46 H 0.117 0.883 47 H 0.081 0.919 48 H 0.133 0.867 49 H 0.159 0.841 50 H 0.098 0.902 51 H 0.079 0.921 52 H 0.074 0.926 53 H 0.075 0.925 54 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.718 -3.296 -1.114 3.880 hybrid contribution 1.646 -0.425 -1.063 2.006 sum 3.365 -3.721 -2.177 5.469 Atomic orbital electron populations 1.22418 0.77482 1.04210 1.01325 1.85439 1.24430 1.62484 1.90919 0.74482 0.61920 0.48272 0.58009 1.27243 1.06594 1.10494 1.19031 1.27106 1.24312 0.98671 1.06004 1.21008 0.93191 0.97054 1.03130 1.22728 0.94300 0.84025 1.00645 1.87922 1.19920 1.29030 1.95550 1.23272 0.81375 0.97959 1.01965 1.21777 0.92960 0.91081 0.88049 0.89424 1.86677 1.77528 1.56918 1.15836 1.22856 0.94559 0.90143 1.02515 1.63437 1.18186 1.13492 1.31705 1.23019 0.98319 0.95837 0.89876 1.22821 0.93143 0.97910 1.01838 1.21873 0.94347 0.96546 0.97874 1.30324 1.02865 0.94650 0.96654 1.68138 1.32620 1.12068 1.13760 0.85074 0.74959 0.80214 0.80554 1.14875 1.18335 1.18089 1.22890 0.85847 0.99282 0.99677 1.85465 1.82152 1.66370 1.29314 1.22395 1.00038 0.97349 0.85511 0.89045 0.92708 0.92523 0.90044 0.91083 0.90746 0.89274 0.89704 0.91405 0.91159 0.92720 0.92851 0.91577 0.91506 0.77062 0.92432 0.89325 0.92101 0.91029 0.88325 0.91888 0.86702 0.84089 0.90151 0.92146 0.92587 0.92471 0.89419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.06 10.20 113.37 1.16 1.09 16 2 O -0.67 -1.09 8.92 -131.45 -1.17 -2.26 16 3 Si 1.49 -0.31 10.69 68.60 0.73 0.42 16 4 C -0.53 -0.60 8.50 113.37 0.96 0.36 16 5 C -0.48 0.34 4.30 71.98 0.31 0.65 16 6 C -0.11 -0.22 4.96 30.59 0.15 -0.07 16 7 C 0.06 0.13 5.94 71.98 0.43 0.56 16 8 O -0.40 -2.49 10.31 -144.35 -1.49 -3.98 16 9 C 0.03 0.00 5.57 71.98 0.40 0.41 16 10 C 0.12 0.21 3.45 30.59 0.11 0.32 16 11 H 0.09 0.61 8.14 -2.39 -0.02 0.60 16 12 O -0.56 -1.77 10.82 -144.35 -1.56 -3.33 16 13 C 0.03 -0.04 4.40 86.30 0.38 0.34 16 14 N -0.54 -1.37 5.16 -885.51 -4.57 -5.94 16 15 C 0.06 0.03 5.08 86.77 0.44 0.47 16 16 C -0.12 0.14 6.53 32.08 0.21 0.35 16 17 C -0.09 0.16 2.91 -10.26 -0.03 0.13 16 18 C 0.00 0.00 4.86 88.67 0.43 0.43 16 19 N -0.65 -1.66 12.21 24.11 0.29 -1.36 16 20 Si 0.98 -3.57 29.56 68.60 2.03 -1.54 16 21 H -0.23 1.08 7.11 99.48 0.71 1.78 16 22 H -0.26 0.25 7.11 99.48 0.71 0.95 16 23 H -0.26 0.38 7.11 99.48 0.71 1.09 16 24 C 0.05 0.07 6.40 86.65 0.55 0.63 16 25 O -0.67 -1.70 8.92 -131.45 -1.17 -2.87 16 26 C 0.04 -0.05 10.20 113.37 1.16 1.10 16 27 H 0.09 -0.34 8.14 -2.39 -0.02 -0.36 16 28 H 0.05 -0.17 7.83 -2.39 -0.02 -0.19 16 29 H 0.06 -0.21 7.21 -2.38 -0.02 -0.22 16 30 H 0.08 0.01 7.96 -2.39 -0.02 -0.01 16 31 H 0.07 0.07 7.48 -2.39 -0.02 0.05 16 32 H 0.07 0.15 7.79 -2.38 -0.02 0.13 16 33 H 0.09 -0.15 7.96 -2.38 -0.02 -0.17 16 34 H 0.08 -0.16 7.48 -2.39 -0.02 -0.18 16 35 H 0.07 0.21 7.96 -2.39 -0.02 0.19 16 36 H 0.07 0.18 7.79 -2.39 -0.02 0.16 16 37 H 0.05 0.01 8.14 -2.38 -0.02 -0.01 16 38 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 39 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 40 H 0.07 -0.14 8.14 -2.38 -0.02 -0.16 16 41 H 0.38 -1.56 8.73 -74.06 -0.65 -2.21 16 42 H 0.06 -0.28 7.83 -2.38 -0.02 -0.30 16 43 H 0.09 -0.21 8.01 -2.39 -0.02 -0.23 16 44 H 0.06 -0.18 7.02 -2.39 -0.02 -0.19 16 45 H 0.07 0.33 7.59 -2.39 -0.02 0.32 16 46 H 0.10 -0.53 8.14 -2.39 -0.02 -0.55 16 47 H 0.06 0.16 8.04 -2.39 -0.02 0.14 16 48 H 0.11 -0.75 7.86 -2.38 -0.02 -0.77 16 49 H 0.34 -0.16 8.23 -92.71 -0.76 -0.92 16 50 H 0.08 0.50 6.65 -2.39 -0.02 0.49 16 51 H 0.06 -0.06 7.54 -2.39 -0.02 -0.08 16 52 H 0.06 -0.18 7.83 -2.39 -0.02 -0.20 16 53 H 0.06 -0.20 7.21 -2.39 -0.02 -0.22 16 54 H 0.09 -0.24 8.14 -2.39 -0.02 -0.26 16 Total: 0.00 -15.61 428.32 -0.04 -15.65 By element: Atomic # 1 Polarization: -1.77 SS G_CDS: 0.21 Total: -1.56 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 6.66 Total: 6.76 kcal Atomic # 7 Polarization: -3.03 SS G_CDS: -4.27 Total: -7.30 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -5.39 Total: -12.44 kcal Atomic # 14 Polarization: -3.87 SS G_CDS: 2.76 Total: -1.11 kcal Total: -15.61 -0.04 -15.65 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252240019.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -193.998 kcal (2) G-P(sol) polarization free energy of solvation -15.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds