Wall clock time and date at job start Wed Apr 1 2020 05:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 Si 1.63101 * 114.00030 * 2 1 4 4 C 1.86305 * 109.46905 * 299.99548 * 3 2 1 5 5 C 1.86306 * 109.46853 * 179.97438 * 3 2 1 6 6 C 1.53007 * 109.46675 * 179.97438 * 5 3 2 7 7 C 1.53005 * 109.46733 * 179.97438 * 6 5 3 8 8 O 1.42899 * 109.46822 * 179.97438 * 7 6 5 9 9 C 1.42900 * 113.99755 * 180.02562 * 8 7 6 10 10 C 1.53005 * 109.46972 * 180.02562 * 9 8 7 11 11 H 1.08994 * 109.47062 * 54.99767 * 10 9 8 12 12 O 1.42900 * 109.47111 * 295.00216 * 10 9 8 13 13 C 1.52996 * 109.46969 * 174.99856 * 10 9 8 14 14 N 1.46903 * 109.47094 * 184.99612 * 13 10 9 15 15 C 1.46901 * 110.99942 * 179.97438 * 14 13 10 16 16 C 1.53787 * 113.61156 * 205.00197 * 15 14 13 17 17 C 1.53781 * 87.07987 * 270.88608 * 16 15 14 18 18 C 1.50701 * 113.61206 * 219.93687 * 17 16 15 19 19 N 1.27939 * 120.00139 * 23.47293 * 18 17 16 20 20 Si 1.86808 * 119.99872 * 203.47332 * 18 17 16 21 21 H 1.48501 * 109.47139 * 90.00028 * 20 18 17 22 22 H 1.48494 * 109.47045 * 210.00018 * 20 18 17 23 23 H 1.48497 * 109.46774 * 330.00079 * 20 18 17 24 24 C 1.53779 * 113.61186 * 107.50604 * 15 14 13 25 25 O 1.63090 * 109.47231 * 59.99761 * 3 2 1 26 26 C 1.42901 * 114.00315 * 60.00280 * 25 3 2 27 27 H 1.09000 * 109.47272 * 60.00206 * 1 2 3 28 28 H 1.09001 * 109.47249 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47170 * 300.00494 * 1 2 3 30 30 H 1.09001 * 109.47228 * 300.00003 * 4 3 2 31 31 H 1.09002 * 109.46617 * 60.00088 * 4 3 2 32 32 H 1.08997 * 109.46578 * 180.02562 * 4 3 2 33 33 H 1.08999 * 109.47119 * 60.00089 * 5 3 2 34 34 H 1.08997 * 109.47037 * 299.99460 * 5 3 2 35 35 H 1.08999 * 109.47048 * 60.00323 * 6 5 3 36 36 H 1.08997 * 109.47173 * 299.99653 * 6 5 3 37 37 H 1.08999 * 109.46922 * 60.00451 * 7 6 5 38 38 H 1.08997 * 109.47176 * 299.99857 * 7 6 5 39 39 H 1.08998 * 109.47173 * 59.99925 * 9 8 7 40 40 H 1.09007 * 109.47096 * 299.99984 * 9 8 7 41 41 H 0.96706 * 113.99419 * 299.99850 * 12 10 9 42 42 H 1.09006 * 109.47146 * 64.99852 * 13 10 9 43 43 H 1.08997 * 109.47675 * 305.00117 * 13 10 9 44 44 H 1.00903 * 110.99536 * 56.05268 * 14 13 10 45 45 H 1.08999 * 112.85228 * 336.20403 * 15 14 13 46 46 H 1.09005 * 113.61051 * 156.34013 * 16 15 14 47 47 H 1.08993 * 113.61359 * 25.44050 * 16 15 14 48 48 H 1.09002 * 113.61228 * 89.11929 * 17 16 15 49 49 H 0.97002 * 119.99846 * 179.97438 * 19 18 17 50 50 H 1.09003 * 113.61775 * 334.57316 * 24 15 14 51 51 H 1.08996 * 113.61960 * 203.66042 * 24 15 14 52 52 H 1.08998 * 109.46703 * 300.00069 * 26 25 3 53 53 H 1.09002 * 109.47466 * 59.99346 * 26 25 3 54 54 H 1.08995 * 109.47717 * 180.02562 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 14 2.0923 1.4900 0.0000 4 6 1.5427 2.4144 -1.5213 5 6 3.9495 1.3428 0.0008 6 6 4.5718 2.7406 0.0001 7 6 6.0971 2.6197 0.0014 8 8 6.6783 3.9252 0.0002 9 6 8.1073 3.9251 0.0007 10 6 8.6174 5.3677 0.0000 11 1 8.1824 5.9072 0.8412 12 8 8.2397 6.0058 -1.2216 13 6 10.1421 5.3695 0.1262 14 7 10.6218 6.7529 0.2459 15 6 12.0850 6.7937 0.3699 16 6 12.6078 8.0512 1.0844 17 6 12.6529 8.7224 -0.2984 18 6 13.8652 9.5929 -0.5076 19 7 14.9256 9.3885 0.1784 20 14 13.8195 10.9705 -1.7685 21 1 13.3425 12.2188 -1.1208 22 1 15.1831 11.1863 -2.3153 23 1 12.8965 10.6013 -2.8716 24 6 12.7960 7.3109 -0.8918 25 8 1.6111 2.2994 1.3316 26 6 1.9843 1.6718 2.5599 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8643 1.8735 -2.4112 31 1 0.4560 2.5005 -1.5212 32 1 1.9864 3.4100 -1.5214 33 1 4.2715 0.8017 -0.8890 34 1 4.2708 0.8021 0.8910 35 1 4.2499 3.2820 0.8897 36 1 4.2506 3.2809 -0.8903 37 1 6.4194 2.0781 -0.8879 38 1 6.4180 2.0796 0.8921 39 1 8.4709 3.4103 -0.8886 40 1 8.4704 3.4122 0.8914 41 1 8.5922 5.5781 -2.0140 42 1 10.5805 4.9082 -0.7587 43 1 10.4341 4.8058 1.0122 44 1 10.1803 7.2228 1.0219 45 1 12.5030 5.8651 0.7585 46 1 13.5902 7.9191 1.5379 47 1 11.8835 8.4999 1.7642 48 1 11.7224 9.2193 -0.5731 49 1 15.7060 9.9486 0.0435 50 1 12.2236 7.1622 -1.8075 51 1 13.8297 6.9765 -0.9786 52 1 1.5399 0.6777 2.6096 53 1 3.0699 1.5873 2.6097 54 1 1.6274 2.2711 3.3974 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252267710.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:57:36 Heat of formation + Delta-G solvation = -195.384151 kcal Electronic energy + Delta-G solvation = -28117.306765 eV Core-core repulsion = 24019.936530 eV Total energy + Delta-G solvation = -4097.370235 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 348.209 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.53594 -39.55849 -37.95078 -37.94356 -37.41501 -36.12351 -34.48539 -34.13965 -30.76034 -29.08896 -27.67581 -27.20313 -27.08597 -26.53185 -26.31245 -24.86587 -22.84872 -22.19797 -21.43670 -19.64379 -18.24665 -18.02097 -17.67857 -17.59319 -17.21155 -17.05263 -16.77285 -16.25596 -16.20271 -16.04397 -15.98092 -15.59985 -15.44370 -15.30401 -14.92245 -14.79534 -14.55420 -14.36180 -14.14070 -13.80587 -13.58799 -13.44045 -13.20693 -13.15335 -13.09174 -12.95260 -12.68394 -12.53742 -12.48923 -12.35243 -11.98769 -11.95313 -11.86132 -11.74509 -11.62389 -11.60433 -11.47887 -11.21366 -10.95711 -10.87314 -10.77833 -10.59564 -10.39984 -9.71592 -9.29745 0.85322 1.15922 1.29567 1.46743 1.78448 1.90575 1.98576 2.04051 2.28953 2.50695 3.21102 3.57997 3.60679 3.69007 3.90758 3.99386 4.01689 4.03959 4.09071 4.14788 4.27225 4.29851 4.37642 4.42064 4.42893 4.46380 4.47893 4.54093 4.55590 4.58371 4.59964 4.65671 4.69222 4.70269 4.74055 4.90491 4.91340 4.97376 4.99344 5.01294 5.06336 5.13100 5.15511 5.18067 5.20876 5.34491 5.38895 5.46127 5.50334 5.65598 6.09820 6.24562 6.42477 6.92524 6.98053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.673 6.673 3 Si 1.491 2.509 4 C -0.534 4.534 5 C -0.483 4.483 6 C -0.106 4.106 7 C 0.059 3.941 8 O -0.404 6.404 9 C 0.028 3.972 10 C 0.119 3.881 11 H 0.093 0.907 12 O -0.562 6.562 13 C 0.039 3.961 14 N -0.667 5.667 15 C 0.063 3.937 16 C -0.124 4.124 17 C -0.084 4.084 18 C 0.006 3.994 19 N -0.654 5.654 20 Si 0.969 3.031 21 H -0.252 1.252 22 H -0.262 1.262 23 H -0.239 1.239 24 C -0.108 4.108 25 O -0.672 6.672 26 C 0.042 3.958 27 H 0.056 0.944 28 H 0.091 0.909 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.383 0.617 42 H 0.084 0.916 43 H 0.050 0.950 44 H 0.348 0.652 45 H 0.060 0.940 46 H 0.090 0.910 47 H 0.071 0.929 48 H 0.117 0.883 49 H 0.340 0.660 50 H 0.077 0.923 51 H 0.079 0.921 52 H 0.055 0.945 53 H 0.057 0.943 54 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.223 -3.345 0.828 3.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.633 6.633 3 Si 1.574 2.426 4 C -0.634 4.634 5 C -0.561 4.561 6 C -0.144 4.144 7 C -0.017 4.017 8 O -0.324 6.324 9 C -0.049 4.049 10 C 0.059 3.941 11 H 0.111 0.889 12 O -0.368 6.368 13 C -0.091 4.091 14 N -0.299 5.299 15 C -0.047 4.047 16 C -0.163 4.163 17 C -0.103 4.103 18 C -0.242 4.242 19 N -0.267 5.267 20 Si 0.787 3.213 21 H -0.176 1.176 22 H -0.186 1.186 23 H -0.161 1.161 24 C -0.148 4.148 25 O -0.633 6.633 26 C -0.053 4.053 27 H 0.075 0.925 28 H 0.109 0.891 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.231 0.769 42 H 0.102 0.898 43 H 0.068 0.932 44 H 0.167 0.833 45 H 0.078 0.922 46 H 0.109 0.891 47 H 0.090 0.910 48 H 0.135 0.865 49 H 0.157 0.843 50 H 0.096 0.904 51 H 0.098 0.902 52 H 0.074 0.926 53 H 0.076 0.924 54 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.439 -2.731 0.791 2.877 hybrid contribution 1.253 -0.241 -0.106 1.280 sum 0.813 -2.973 0.685 3.157 Atomic orbital electron populations 1.22417 0.77485 1.04202 1.01329 1.85439 1.24429 1.62518 1.90920 0.74473 0.61916 0.48258 0.57998 1.27248 1.06594 1.10518 1.19044 1.27108 1.24319 0.98717 1.05986 1.21011 0.93159 0.97027 1.03181 1.22731 0.94321 0.84048 1.00625 1.87917 1.19903 1.28982 1.95550 1.23311 0.81386 0.98234 1.01959 1.21804 0.92766 0.91079 0.88461 0.88945 1.86627 1.76995 1.57316 1.15859 1.22547 0.94097 0.90170 1.02254 1.60192 1.04202 1.15498 1.50036 1.22521 0.87622 0.97412 0.97134 1.23141 1.01982 0.95410 0.95729 1.21874 0.95564 0.94535 0.98283 1.30274 0.95084 1.00832 0.97999 1.68106 1.03321 1.29871 1.25419 0.85187 0.81053 0.76790 0.78240 1.17636 1.18619 1.16144 1.22901 1.00097 0.93653 0.98118 1.85463 1.82145 1.66351 1.29301 1.22398 1.00056 0.97344 0.85503 0.92530 0.89070 0.92685 0.90096 0.91091 0.90713 0.89353 0.89675 0.91255 0.91185 0.92874 0.92772 0.91792 0.91455 0.76891 0.89768 0.93200 0.83255 0.92166 0.89119 0.90989 0.86483 0.84295 0.90409 0.90213 0.92643 0.92428 0.89374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.08 10.20 113.37 1.16 1.08 16 2 O -0.67 -0.90 8.92 -131.44 -1.17 -2.08 16 3 Si 1.49 -0.90 10.69 68.60 0.73 -0.17 16 4 C -0.53 -0.46 8.50 113.37 0.96 0.50 16 5 C -0.48 0.54 4.30 71.98 0.31 0.85 16 6 C -0.11 -0.15 4.96 30.60 0.15 0.00 16 7 C 0.06 0.09 5.94 71.98 0.43 0.52 16 8 O -0.40 -2.06 10.31 -144.34 -1.49 -3.55 16 9 C 0.03 -0.03 5.57 71.98 0.40 0.37 16 10 C 0.12 -0.05 3.43 30.59 0.10 0.05 16 11 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 12 O -0.56 -2.00 13.25 -144.34 -1.91 -3.91 16 13 C 0.04 -0.14 5.17 86.30 0.45 0.31 16 14 N -0.67 1.16 6.40 -488.84 -3.13 -1.97 16 15 C 0.06 -0.09 4.22 45.44 0.19 0.10 16 16 C -0.12 0.05 7.19 31.12 0.22 0.28 16 17 C -0.08 0.04 3.61 -11.01 -0.04 0.00 16 18 C 0.01 0.00 5.11 88.68 0.45 0.45 16 19 N -0.65 -1.49 12.64 24.11 0.30 -1.19 16 20 Si 0.97 -1.20 29.57 68.60 2.03 0.83 16 21 H -0.25 -0.16 7.11 99.48 0.71 0.54 16 22 H -0.26 -0.15 7.11 99.48 0.71 0.56 16 23 H -0.24 0.08 7.11 99.48 0.71 0.79 16 24 C -0.11 0.08 7.43 31.12 0.23 0.31 16 25 O -0.67 -1.29 8.92 -131.44 -1.17 -2.46 16 26 C 0.04 -0.08 10.20 113.37 1.16 1.08 16 27 H 0.06 -0.22 7.21 -2.39 -0.02 -0.24 16 28 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 29 H 0.05 -0.19 7.83 -2.39 -0.02 -0.21 16 30 H 0.08 -0.01 7.96 -2.39 -0.02 -0.02 16 31 H 0.07 0.05 7.48 -2.39 -0.02 0.03 16 32 H 0.07 0.13 7.79 -2.39 -0.02 0.11 16 33 H 0.09 -0.17 7.96 -2.39 -0.02 -0.19 16 34 H 0.08 -0.21 7.48 -2.39 -0.02 -0.23 16 35 H 0.07 0.15 7.97 -2.39 -0.02 0.13 16 36 H 0.07 0.14 7.79 -2.39 -0.02 0.13 16 37 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 38 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 39 H 0.06 -0.22 8.14 -2.39 -0.02 -0.24 16 40 H 0.07 -0.23 8.14 -2.38 -0.02 -0.25 16 41 H 0.38 -1.03 9.05 -74.05 -0.67 -1.70 16 42 H 0.08 -0.37 8.14 -2.38 -0.02 -0.39 16 43 H 0.05 -0.25 8.13 -2.39 -0.02 -0.27 16 44 H 0.35 -0.78 8.38 -89.69 -0.75 -1.53 16 45 H 0.06 -0.08 7.87 -2.39 -0.02 -0.10 16 46 H 0.09 0.20 7.26 -2.38 -0.02 0.19 16 47 H 0.07 -0.10 7.91 -2.39 -0.02 -0.12 16 48 H 0.12 -0.20 7.88 -2.39 -0.02 -0.22 16 49 H 0.34 -0.10 8.23 -92.71 -0.76 -0.86 16 50 H 0.08 -0.04 8.14 -2.39 -0.02 -0.06 16 51 H 0.08 0.01 8.10 -2.39 -0.02 0.00 16 52 H 0.06 -0.21 7.83 -2.39 -0.02 -0.23 16 53 H 0.06 -0.25 7.21 -2.39 -0.02 -0.27 16 54 H 0.09 -0.31 8.14 -2.39 -0.02 -0.33 16 Total: 0.00 -13.71 438.42 -0.18 -13.90 By element: Atomic # 1 Polarization: -4.75 SS G_CDS: -0.55 Total: -5.30 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: 6.18 Total: 5.90 kcal Atomic # 7 Polarization: -0.33 SS G_CDS: -2.82 Total: -3.16 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: -5.75 Total: -12.00 kcal Atomic # 14 Polarization: -2.11 SS G_CDS: 2.76 Total: 0.66 kcal Total: -13.71 -0.18 -13.90 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252267710.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.489 kcal (2) G-P(sol) polarization free energy of solvation -13.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds