Wall clock time and date at job start Wed Apr 1 2020 04:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42902 * 109.47206 * 2 1 4 4 C 1.52999 * 109.46864 * 120.00066 * 2 1 3 5 5 N 1.46900 * 109.47281 * 306.99749 * 4 2 1 6 6 C 1.46844 * 111.00142 * 292.47927 * 5 4 2 7 7 C 1.53046 * 109.52231 * 174.15398 * 6 5 4 8 8 C 1.53117 * 109.27359 * 59.18000 * 7 6 5 9 9 C 1.53121 * 109.16338 * 302.34244 * 8 7 6 10 10 H 1.08997 * 109.50471 * 297.67420 * 9 8 7 11 11 C 1.50701 * 109.50388 * 177.59600 * 9 8 7 12 12 H 1.08003 * 119.99920 * 239.99987 * 11 9 8 13 13 C 1.37879 * 120.00036 * 60.00234 * 11 9 8 14 14 N 1.31514 * 119.99582 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 120.00002 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47069 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46879 * 120.00011 * 15 13 11 18 18 H 1.48501 * 109.46975 * 239.99864 * 15 13 11 19 19 C 1.46844 * 111.00253 * 168.26488 * 5 4 2 20 20 C 1.50697 * 109.47283 * 240.00031 * 2 1 3 21 21 O 1.20828 * 119.99957 * 264.99976 * 20 2 1 22 22 O 1.34226 * 120.00343 * 85.00071 * 20 2 1 23 23 C 1.45199 * 117.00253 * 180.02562 * 22 20 2 24 24 C 1.50698 * 109.47384 * 180.02562 * 23 22 20 25 25 C 1.38243 * 119.99999 * 269.72911 * 24 23 22 26 26 C 1.38234 * 119.99968 * 179.78669 * 25 24 23 27 27 C 1.38232 * 119.99864 * 0.43815 * 26 25 24 28 28 C 1.38230 * 120.00438 * 359.81220 * 27 26 25 29 29 C 1.38239 * 120.00057 * 359.97438 * 28 27 26 30 30 H 1.09002 * 109.47079 * 185.53335 * 1 2 3 31 31 H 1.08992 * 109.47368 * 305.53148 * 1 2 3 32 32 H 1.09003 * 109.47178 * 65.53433 * 1 2 3 33 33 H 0.96699 * 113.99988 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47597 * 67.00833 * 4 2 1 35 35 H 1.09007 * 109.47195 * 187.00343 * 4 2 1 36 36 H 1.08995 * 109.46296 * 294.17211 * 6 5 4 37 37 H 1.09000 * 109.46116 * 54.15418 * 6 5 4 38 38 H 1.08992 * 109.50371 * 179.11689 * 7 6 5 39 39 H 1.09001 * 109.50327 * 299.24373 * 7 6 5 40 40 H 1.09006 * 109.52564 * 62.24963 * 8 7 6 41 41 H 1.09005 * 109.52266 * 182.37267 * 8 7 6 42 42 H 0.97004 * 119.99396 * 179.97438 * 14 13 11 43 43 H 1.09008 * 109.46274 * 305.86376 * 19 5 4 44 44 H 1.09001 * 109.46150 * 65.82809 * 19 5 4 45 45 H 1.09007 * 109.47199 * 299.99928 * 23 22 20 46 46 H 1.08999 * 109.47573 * 59.99958 * 23 22 20 47 47 H 1.07998 * 119.99435 * 359.97438 * 25 24 23 48 48 H 1.07996 * 119.99706 * 180.27262 * 26 25 24 49 49 H 1.08010 * 119.99802 * 179.83629 * 27 26 25 50 50 H 1.07998 * 120.00297 * 180.02562 * 28 27 26 51 51 H 1.07991 * 120.00089 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 1.4173 -0.1331 2.4427 6 6 1.8843 1.2427 2.6561 7 6 1.1097 1.8715 3.8166 8 6 1.3281 1.0365 5.0814 9 6 0.8787 -0.4032 4.8170 10 1 -0.1877 -0.4160 4.5917 11 6 1.1451 -1.2456 6.0379 12 1 1.8031 -2.0994 5.9717 13 6 0.5487 -0.9263 7.2393 14 7 -0.2522 0.1137 7.3200 15 14 0.8784 -1.9709 8.7525 16 1 1.8081 -3.0738 8.3996 17 1 1.4897 -1.1287 9.8118 18 1 -0.4001 -2.5403 9.2490 19 6 1.6599 -0.9660 3.6275 20 6 2.0323 -0.7104 -1.2304 21 8 2.3197 -1.8827 -1.1762 22 8 2.1606 -0.0408 -2.3867 23 6 2.6496 -0.7890 -3.5310 24 6 2.7280 0.1208 -4.7298 25 6 1.6412 0.2455 -5.5750 26 6 1.7115 1.0834 -6.6722 27 6 2.8716 1.7896 -6.9293 28 6 3.9602 1.6610 -6.0871 29 6 3.8884 0.8265 -4.9874 30 1 -0.3633 -1.0229 0.0991 31 1 -0.3634 0.5972 0.8362 32 1 -0.3634 0.4256 -0.9354 33 1 2.9703 1.4236 0.0004 34 1 1.7826 -1.7787 1.1888 35 1 3.1227 -0.6141 1.3142 36 1 2.9482 1.2325 2.8927 37 1 1.7191 1.8267 1.7507 38 1 1.4673 2.8872 3.9849 39 1 0.0471 1.8945 3.5748 40 1 2.3856 1.0453 5.3456 41 1 0.7446 1.4567 5.9006 42 1 -0.6720 0.3381 8.1652 43 1 1.3321 -1.9862 3.4277 44 1 2.7249 -0.9658 3.8597 45 1 3.6412 -1.1842 -3.3099 46 1 1.9692 -1.6134 -3.7439 47 1 0.7362 -0.3094 -5.3763 48 1 0.8609 1.1842 -7.3300 49 1 2.9275 2.4423 -7.7881 50 1 4.8664 2.2131 -6.2877 51 1 4.7390 0.7257 -4.3296 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253632843.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:00 Heat of formation + Delta-G solvation = -106.323837 kcal Electronic energy + Delta-G solvation = -30757.888119 eV Core-core repulsion = 26622.138040 eV Total energy + Delta-G solvation = -4135.750079 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.04099 -39.61913 -38.72168 -36.91385 -36.61898 -33.63381 -32.56183 -32.16221 -31.32162 -30.67266 -29.75812 -27.13068 -26.35204 -24.89494 -23.96745 -23.00899 -21.98591 -21.62282 -21.37820 -20.19955 -18.70855 -18.42264 -17.58330 -16.85739 -16.77203 -16.29472 -15.77742 -15.54314 -15.47301 -14.98356 -14.62415 -14.36873 -14.08401 -13.85036 -13.65354 -13.48445 -13.33591 -13.08315 -12.80185 -12.75445 -12.42480 -12.37757 -12.25092 -12.12890 -12.03751 -11.58366 -11.51849 -11.43146 -11.19590 -10.95285 -10.91829 -10.86891 -10.62567 -10.59379 -10.22212 -9.82559 -9.75629 -9.41315 -9.32888 -9.26207 -8.88111 -8.64988 -8.26775 -7.69224 -5.95325 -4.01390 0.76461 0.99580 1.93115 2.41739 3.31114 3.39205 3.42554 3.43477 3.95721 4.15755 4.36824 4.39304 4.49499 4.59291 4.66314 4.70743 4.76246 4.79733 4.95077 5.02935 5.09511 5.21915 5.34801 5.52518 5.59158 5.61643 5.73950 5.82786 5.85681 5.91398 5.96029 6.00237 6.09266 6.13414 6.13939 6.21325 6.36566 6.42281 6.44476 6.55271 6.57867 6.79627 6.83780 6.99424 7.22060 7.26075 7.43008 7.58896 7.67260 7.76854 7.82600 8.11076 8.20760 8.50619 9.02859 9.62802 11.10450 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.029652 B = 0.001913 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.069094 B =14632.478668 C =14962.623260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.158 3.842 3 O -0.528 6.528 4 C 0.041 3.959 5 N -0.527 5.527 6 C 0.037 3.963 7 C -0.115 4.115 8 C -0.111 4.111 9 C 0.056 3.944 10 H 0.035 0.965 11 C -0.514 4.514 12 H 0.053 0.947 13 C 0.062 3.938 14 N -0.887 5.887 15 Si 0.889 3.111 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.284 1.284 19 C 0.067 3.933 20 C 0.439 3.561 21 O -0.500 6.500 22 O -0.339 6.339 23 C 0.103 3.897 24 C -0.095 4.095 25 C -0.094 4.094 26 C -0.123 4.123 27 C -0.111 4.111 28 C -0.123 4.123 29 C -0.095 4.095 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.059 0.941 33 H 0.377 0.623 34 H 0.093 0.907 35 H 0.034 0.966 36 H 0.016 0.984 37 H 0.099 0.901 38 H 0.044 0.956 39 H 0.059 0.941 40 H 0.028 0.972 41 H 0.089 0.911 42 H 0.259 0.741 43 H 0.059 0.941 44 H 0.018 0.982 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.125 0.875 48 H 0.125 0.875 49 H 0.124 0.876 50 H 0.125 0.875 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.083 3.776 -27.229 28.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.115 3.885 3 O -0.333 6.333 4 C -0.088 4.088 5 N -0.251 5.251 6 C -0.090 4.090 7 C -0.153 4.153 8 C -0.150 4.150 9 C 0.037 3.963 10 H 0.053 0.947 11 C -0.553 4.553 12 H 0.072 0.928 13 C -0.139 4.139 14 N -0.526 5.526 15 Si 0.718 3.282 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.059 4.059 20 C 0.280 3.720 21 O -0.387 6.387 22 O -0.255 6.255 23 C 0.030 3.970 24 C -0.095 4.095 25 C -0.112 4.112 26 C -0.141 4.141 27 C -0.129 4.129 28 C -0.141 4.141 29 C -0.113 4.113 30 H 0.095 0.905 31 H 0.119 0.881 32 H 0.078 0.922 33 H 0.225 0.775 34 H 0.112 0.888 35 H 0.052 0.948 36 H 0.034 0.966 37 H 0.117 0.883 38 H 0.063 0.937 39 H 0.078 0.922 40 H 0.046 0.954 41 H 0.108 0.892 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.037 0.963 45 H 0.097 0.903 46 H 0.098 0.902 47 H 0.143 0.857 48 H 0.143 0.857 49 H 0.142 0.858 50 H 0.143 0.857 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.932 3.645 -27.186 27.869 hybrid contribution 1.841 -0.930 0.936 2.265 sum 6.773 2.715 -26.250 27.246 Atomic orbital electron populations 1.21654 0.88682 1.04023 1.04000 1.21262 0.97923 0.82037 0.87248 1.86641 1.26902 1.24186 1.95605 1.22534 0.96386 0.99839 0.90087 1.61939 1.57452 1.02940 1.02775 1.22648 0.95981 0.89710 1.00678 1.21649 0.99925 0.97610 0.96137 1.21662 0.99374 0.97652 0.96271 1.18654 0.95591 0.91983 0.90034 0.94722 1.21193 1.27924 1.12110 0.94058 0.92844 1.24932 0.95043 0.95184 0.98710 1.69907 1.30668 1.26486 1.25580 0.86582 0.77998 0.80460 0.83202 1.19897 1.21138 1.21050 1.22350 0.98108 0.95669 0.89806 1.25097 0.74600 0.86843 0.85464 1.90683 1.45398 1.17293 1.85307 1.86687 1.76811 1.43729 1.18306 1.21838 1.00563 0.92715 0.81899 1.19506 0.94940 0.99584 0.95511 1.21116 0.97640 0.98063 0.94431 1.21175 0.98250 0.96997 0.97680 1.21253 0.93339 0.98921 0.99365 1.21171 0.98970 0.98904 0.95081 1.21100 0.97495 0.95475 0.97210 0.90540 0.88092 0.92150 0.77467 0.88823 0.94827 0.96607 0.88311 0.93684 0.92212 0.95365 0.89221 0.93146 0.92272 0.96324 0.90317 0.90227 0.85726 0.85670 0.85831 0.85693 0.85790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 8.48 37.16 0.32 -1.33 16 2 C 0.16 2.06 1.04 -91.78 -0.10 1.97 16 3 O -0.53 -6.39 9.47 -49.12 -0.47 -6.85 16 4 C 0.04 0.61 3.97 -3.82 -0.02 0.60 16 5 N -0.53 -9.38 3.70 -234.67 -0.87 -10.24 16 6 C 0.04 0.63 5.08 -3.83 -0.02 0.62 16 7 C -0.12 -2.25 6.09 -26.65 -0.16 -2.41 16 8 C -0.11 -2.64 5.02 -26.61 -0.13 -2.77 16 9 C 0.06 1.40 2.27 -91.69 -0.21 1.19 16 10 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 11 C -0.51 -14.12 8.56 -34.44 -0.29 -14.41 16 12 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 13 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 14 N -0.89 -25.34 11.35 55.43 0.63 -24.71 16 15 Si 0.89 21.36 29.54 -169.99 -5.02 16.33 16 16 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 19 C 0.07 1.42 4.68 -3.84 -0.02 1.40 16 20 C 0.44 5.70 6.80 36.00 0.24 5.95 16 21 O -0.50 -7.53 15.69 -18.75 -0.29 -7.83 16 22 O -0.34 -4.00 9.96 -44.42 -0.44 -4.44 16 23 C 0.10 1.00 5.59 36.00 0.20 1.20 16 24 C -0.10 -0.85 5.52 -104.62 -0.58 -1.43 16 25 C -0.09 -0.77 9.70 -39.58 -0.38 -1.15 16 26 C -0.12 -0.87 10.05 -39.58 -0.40 -1.26 16 27 C -0.11 -0.74 10.05 -39.59 -0.40 -1.13 16 28 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 29 C -0.09 -0.76 9.70 -39.58 -0.38 -1.14 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.10 1.46 7.63 -51.93 -0.40 1.06 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.38 3.42 9.04 45.56 0.41 3.84 16 34 H 0.09 1.48 7.42 -51.93 -0.39 1.10 16 35 H 0.03 0.49 8.11 -51.93 -0.42 0.07 16 36 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.10 1.52 4.87 -51.93 -0.25 1.27 16 38 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 2.38 6.15 -51.93 -0.32 2.06 16 42 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.06 1.24 8.00 -51.92 -0.42 0.83 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 0.71 8.08 -51.92 -0.42 0.29 16 46 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 47 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 48 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 49 H 0.12 0.55 8.06 -52.48 -0.42 0.13 16 50 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 51 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 407.84 15.07 6.15 6.15 Total: -1.00 -30.93 407.84 -10.79 -41.72 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -7.66 Total: 3.62 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -2.82 Total: -13.74 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: -0.24 Total: -34.96 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -1.20 Total: -19.12 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -30.93 -10.79 -41.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253632843.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.605 kcal (2) G-P(sol) polarization free energy of solvation -30.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds