Wall clock time and date at job start Wed Apr 1 2020 04:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42902 * 109.47206 * 2 1 4 4 C 1.52999 * 109.46864 * 120.00066 * 2 1 3 5 5 N 1.46900 * 109.47281 * 306.99749 * 4 2 1 6 6 C 1.46844 * 111.00142 * 292.47927 * 5 4 2 7 7 C 1.53046 * 109.52231 * 174.15398 * 6 5 4 8 8 C 1.53117 * 109.27359 * 59.18000 * 7 6 5 9 9 C 1.53121 * 109.16338 * 302.34244 * 8 7 6 10 10 H 1.08997 * 109.50471 * 297.67420 * 9 8 7 11 11 C 1.50701 * 109.50388 * 177.59600 * 9 8 7 12 12 H 1.08003 * 119.99920 * 239.99987 * 11 9 8 13 13 C 1.37879 * 120.00036 * 60.00234 * 11 9 8 14 14 N 1.31514 * 119.99582 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 120.00002 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47069 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46879 * 120.00011 * 15 13 11 18 18 H 1.48501 * 109.46975 * 239.99864 * 15 13 11 19 19 C 1.46844 * 111.00253 * 168.26488 * 5 4 2 20 20 C 1.50697 * 109.47283 * 240.00031 * 2 1 3 21 21 O 1.20828 * 119.99957 * 264.99976 * 20 2 1 22 22 O 1.34226 * 120.00343 * 85.00071 * 20 2 1 23 23 C 1.45199 * 117.00253 * 180.02562 * 22 20 2 24 24 C 1.50698 * 109.47384 * 180.02562 * 23 22 20 25 25 C 1.38243 * 119.99999 * 269.72911 * 24 23 22 26 26 C 1.38234 * 119.99968 * 179.78669 * 25 24 23 27 27 C 1.38232 * 119.99864 * 0.43815 * 26 25 24 28 28 C 1.38230 * 120.00438 * 359.81220 * 27 26 25 29 29 C 1.38239 * 120.00057 * 359.97438 * 28 27 26 30 30 H 1.09002 * 109.47079 * 185.53335 * 1 2 3 31 31 H 1.08992 * 109.47368 * 305.53148 * 1 2 3 32 32 H 1.09003 * 109.47178 * 65.53433 * 1 2 3 33 33 H 0.96699 * 113.99988 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47597 * 67.00833 * 4 2 1 35 35 H 1.09007 * 109.47195 * 187.00343 * 4 2 1 36 36 H 1.08995 * 109.46296 * 294.17211 * 6 5 4 37 37 H 1.09000 * 109.46116 * 54.15418 * 6 5 4 38 38 H 1.08992 * 109.50371 * 179.11689 * 7 6 5 39 39 H 1.09001 * 109.50327 * 299.24373 * 7 6 5 40 40 H 1.09006 * 109.52564 * 62.24963 * 8 7 6 41 41 H 1.09005 * 109.52266 * 182.37267 * 8 7 6 42 42 H 0.97004 * 119.99396 * 179.97438 * 14 13 11 43 43 H 1.09008 * 109.46274 * 305.86376 * 19 5 4 44 44 H 1.09001 * 109.46150 * 65.82809 * 19 5 4 45 45 H 1.09007 * 109.47199 * 299.99928 * 23 22 20 46 46 H 1.08999 * 109.47573 * 59.99958 * 23 22 20 47 47 H 1.07998 * 119.99435 * 359.97438 * 25 24 23 48 48 H 1.07996 * 119.99706 * 180.27262 * 26 25 24 49 49 H 1.08010 * 119.99802 * 179.83629 * 27 26 25 50 50 H 1.07998 * 120.00297 * 180.02562 * 28 27 26 51 51 H 1.07991 * 120.00089 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 1.4173 -0.1331 2.4427 6 6 1.8843 1.2427 2.6561 7 6 1.1097 1.8715 3.8166 8 6 1.3281 1.0365 5.0814 9 6 0.8787 -0.4032 4.8170 10 1 -0.1877 -0.4160 4.5917 11 6 1.1451 -1.2456 6.0379 12 1 1.8031 -2.0994 5.9717 13 6 0.5487 -0.9263 7.2393 14 7 -0.2522 0.1137 7.3200 15 14 0.8784 -1.9709 8.7525 16 1 1.8081 -3.0738 8.3996 17 1 1.4897 -1.1287 9.8118 18 1 -0.4001 -2.5403 9.2490 19 6 1.6599 -0.9660 3.6275 20 6 2.0323 -0.7104 -1.2304 21 8 2.3197 -1.8827 -1.1762 22 8 2.1606 -0.0408 -2.3867 23 6 2.6496 -0.7890 -3.5310 24 6 2.7280 0.1208 -4.7298 25 6 1.6412 0.2455 -5.5750 26 6 1.7115 1.0834 -6.6722 27 6 2.8716 1.7896 -6.9293 28 6 3.9602 1.6610 -6.0871 29 6 3.8884 0.8265 -4.9874 30 1 -0.3633 -1.0229 0.0991 31 1 -0.3634 0.5972 0.8362 32 1 -0.3634 0.4256 -0.9354 33 1 2.9703 1.4236 0.0004 34 1 1.7826 -1.7787 1.1888 35 1 3.1227 -0.6141 1.3142 36 1 2.9482 1.2325 2.8927 37 1 1.7191 1.8267 1.7507 38 1 1.4673 2.8872 3.9849 39 1 0.0471 1.8945 3.5748 40 1 2.3856 1.0453 5.3456 41 1 0.7446 1.4567 5.9006 42 1 -0.6720 0.3381 8.1652 43 1 1.3321 -1.9862 3.4277 44 1 2.7249 -0.9658 3.8597 45 1 3.6412 -1.1842 -3.3099 46 1 1.9692 -1.6134 -3.7439 47 1 0.7362 -0.3094 -5.3763 48 1 0.8609 1.1842 -7.3300 49 1 2.9275 2.4423 -7.7881 50 1 4.8664 2.2131 -6.2877 51 1 4.7390 0.7257 -4.3296 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001253632843.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:58 Heat of formation + Delta-G solvation = -123.221086 kcal Electronic energy + Delta-G solvation = -30758.620839 eV Core-core repulsion = 26622.138040 eV Total energy + Delta-G solvation = -4136.482798 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.05643 -40.36886 -39.88881 -38.18972 -37.63483 -35.38264 -33.76091 -33.17860 -31.98709 -31.84061 -31.58626 -27.86182 -27.62002 -26.88608 -25.10540 -23.53537 -23.42516 -23.09908 -22.25197 -21.29440 -20.35259 -19.57063 -18.38281 -18.36984 -17.69671 -17.53590 -16.91046 -16.69945 -16.38286 -16.19805 -15.85398 -15.68596 -15.30606 -15.00248 -14.79997 -14.47084 -14.31207 -14.23483 -14.04064 -13.91718 -13.89569 -13.62706 -13.45849 -13.33806 -13.09075 -12.92412 -12.81551 -12.70485 -12.51368 -12.42988 -12.09549 -12.08357 -11.90878 -11.72739 -11.68718 -11.66852 -11.40442 -11.19565 -10.65153 -10.56053 -10.26199 -9.86260 -9.82141 -9.15567 -8.07065 -6.21060 0.17105 0.46309 0.90619 1.39851 1.41632 1.51320 1.53230 2.43038 2.82415 2.98334 3.10589 3.19675 3.48744 3.58056 3.76263 3.77365 3.82075 4.09951 4.20416 4.24055 4.27358 4.30791 4.34930 4.41374 4.49642 4.58792 4.61563 4.69428 4.71626 4.81369 4.83962 4.86915 4.99087 4.99557 5.01509 5.11310 5.16809 5.17750 5.31304 5.33409 5.45798 5.51150 5.56135 5.57125 5.58235 5.66101 5.97609 6.04379 6.12969 6.22008 6.27640 6.39307 6.47015 6.65759 6.91799 7.46567 8.97363 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.029652 B = 0.001913 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.069094 B =14632.478668 C =14962.623260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.168 3.832 3 O -0.530 6.530 4 C 0.044 3.956 5 N -0.530 5.530 6 C 0.044 3.956 7 C -0.109 4.109 8 C -0.104 4.104 9 C 0.055 3.945 10 H -0.001 1.001 11 C -0.536 4.536 12 H 0.050 0.950 13 C 0.014 3.986 14 N -0.914 5.914 15 Si 0.953 3.047 16 H -0.269 1.269 17 H -0.280 1.280 18 H -0.280 1.280 19 C 0.081 3.919 20 C 0.449 3.551 21 O -0.523 6.523 22 O -0.339 6.339 23 C 0.102 3.898 24 C -0.113 4.113 25 C -0.108 4.108 26 C -0.130 4.130 27 C -0.114 4.114 28 C -0.130 4.130 29 C -0.107 4.107 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.393 0.607 34 H 0.085 0.915 35 H 0.044 0.956 36 H 0.021 0.979 37 H 0.125 0.875 38 H 0.066 0.934 39 H 0.050 0.950 40 H 0.019 0.981 41 H 0.056 0.944 42 H 0.260 0.740 43 H 0.055 0.945 44 H 0.014 0.986 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.130 0.870 48 H 0.144 0.856 49 H 0.147 0.853 50 H 0.145 0.855 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.151 4.498 -29.190 30.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.125 3.875 3 O -0.338 6.338 4 C -0.085 4.085 5 N -0.255 5.255 6 C -0.082 4.082 7 C -0.147 4.147 8 C -0.142 4.142 9 C 0.036 3.964 10 H 0.017 0.983 11 C -0.575 4.575 12 H 0.068 0.932 13 C -0.185 4.185 14 N -0.553 5.553 15 Si 0.779 3.221 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.047 4.047 20 C 0.291 3.709 21 O -0.412 6.412 22 O -0.255 6.255 23 C 0.029 3.971 24 C -0.113 4.113 25 C -0.127 4.127 26 C -0.148 4.148 27 C -0.131 4.131 28 C -0.147 4.147 29 C -0.125 4.125 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.243 0.757 34 H 0.103 0.897 35 H 0.062 0.938 36 H 0.039 0.961 37 H 0.143 0.857 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.038 0.962 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.032 0.968 45 H 0.101 0.899 46 H 0.099 0.901 47 H 0.148 0.852 48 H 0.162 0.838 49 H 0.165 0.835 50 H 0.163 0.837 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.017 4.380 -29.172 30.106 hybrid contribution 1.513 -1.112 1.449 2.371 sum 7.529 3.268 -27.723 28.913 Atomic orbital electron populations 1.21632 0.88727 1.03822 1.04130 1.20964 0.97814 0.82227 0.86459 1.86592 1.28537 1.23226 1.95395 1.22511 0.96856 0.99530 0.89621 1.61833 1.58311 1.02965 1.02367 1.22660 0.95635 0.89286 1.00661 1.21573 0.99981 0.98214 0.94938 1.21473 0.97885 0.97490 0.97401 1.18567 0.93993 0.92869 0.90999 0.98255 1.21558 1.27992 1.12461 0.95445 0.93219 1.25705 0.94876 0.96330 1.01577 1.70045 1.31315 1.27697 1.26262 0.85583 0.77953 0.78961 0.79595 1.19325 1.20622 1.20609 1.22010 0.96912 0.95794 0.89956 1.24884 0.73980 0.86286 0.85761 1.90681 1.46560 1.18255 1.85712 1.86669 1.76542 1.43899 1.18408 1.21991 1.00695 0.92939 0.81455 1.19548 0.95822 1.00431 0.95531 1.21317 0.97780 0.98627 0.94930 1.21475 0.99205 0.96539 0.97553 1.21615 0.92948 0.98729 0.99850 1.21481 0.99966 0.98638 0.94650 1.21308 0.97535 0.95680 0.97940 0.90701 0.89511 0.90724 0.75655 0.89684 0.93783 0.96119 0.85723 0.91518 0.93126 0.96200 0.92527 0.93090 0.92653 0.96757 0.89906 0.90098 0.85189 0.83778 0.83527 0.83708 0.85004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 8.48 71.98 0.61 -2.51 16 2 C 0.17 4.11 1.04 -11.54 -0.01 4.10 16 3 O -0.53 -11.40 9.47 -135.70 -1.29 -12.68 16 4 C 0.04 1.26 3.97 86.30 0.34 1.60 16 5 N -0.53 -18.54 3.70 -896.35 -3.31 -21.85 16 6 C 0.04 1.45 5.08 86.33 0.44 1.88 16 7 C -0.11 -4.20 6.09 30.65 0.19 -4.01 16 8 C -0.10 -5.04 5.02 30.67 0.15 -4.89 16 9 C 0.05 2.80 2.27 -11.49 -0.03 2.78 16 10 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 11 C -0.54 -30.16 8.56 25.60 0.22 -29.94 16 12 H 0.05 2.76 7.74 -2.91 -0.02 2.73 16 13 C 0.01 0.78 5.30 84.66 0.45 1.23 16 14 N -0.91 -53.54 11.35 21.45 0.24 -53.29 16 15 Si 0.95 44.33 29.54 68.60 2.03 46.35 16 16 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 17 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 19 C 0.08 3.45 4.68 86.33 0.40 3.85 16 20 C 0.45 11.02 6.80 71.23 0.48 11.50 16 21 O -0.52 -15.27 15.69 21.96 0.34 -14.92 16 22 O -0.34 -7.49 9.96 -46.43 -0.46 -7.95 16 23 C 0.10 1.88 5.59 71.24 0.40 2.28 16 24 C -0.11 -1.89 5.52 -19.86 -0.11 -2.00 16 25 C -0.11 -1.63 9.70 22.27 0.22 -1.41 16 26 C -0.13 -1.58 10.05 22.27 0.22 -1.35 16 27 C -0.11 -1.24 10.05 22.27 0.22 -1.01 16 28 C -0.13 -1.53 10.05 22.27 0.22 -1.31 16 29 C -0.11 -1.55 9.70 22.27 0.22 -1.33 16 30 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.09 2.43 7.63 -2.39 -0.02 2.41 16 32 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.39 5.88 9.04 -74.06 -0.67 5.21 16 34 H 0.08 2.64 7.42 -2.39 -0.02 2.62 16 35 H 0.04 1.20 8.11 -2.38 -0.02 1.18 16 36 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.13 3.49 4.87 -2.39 -0.01 3.48 16 38 H 0.07 2.26 8.14 -2.39 -0.02 2.25 16 39 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.06 3.11 6.15 -2.38 -0.01 3.09 16 42 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 43 H 0.05 2.37 8.00 -2.38 -0.02 2.35 16 44 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.08 1.43 8.08 -2.38 -0.02 1.41 16 46 H 0.08 1.44 8.08 -2.39 -0.02 1.42 16 47 H 0.13 1.68 8.06 -2.91 -0.02 1.66 16 48 H 0.14 1.10 8.06 -2.91 -0.02 1.07 16 49 H 0.15 0.85 8.06 -2.91 -0.02 0.83 16 50 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 51 H 0.13 1.58 8.06 -2.92 -0.02 1.56 16 Total: -1.00 -67.40 407.84 2.44 -64.96 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 0.25 Total: 19.95 kcal Atomic # 6 Polarization: -25.20 SS G_CDS: 4.64 Total: -20.56 kcal Atomic # 7 Polarization: -72.08 SS G_CDS: -3.07 Total: -75.15 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -1.40 Total: -35.55 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -67.40 2.44 -64.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253632843.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.265 kcal (2) G-P(sol) polarization free energy of solvation -67.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds