Wall clock time and date at job start Wed Apr 1 2020 04:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42903 * 109.46804 * 2 1 4 4 C 1.53001 * 109.46964 * 240.00476 * 2 1 3 5 5 N 1.46906 * 109.47192 * 53.63317 * 4 2 1 6 6 C 1.46843 * 110.99491 * 67.37502 * 5 4 2 7 7 C 1.53046 * 109.52106 * 185.83936 * 6 5 4 8 8 C 1.53115 * 109.27278 * 300.81465 * 7 6 5 9 9 C 1.53123 * 109.16337 * 57.65738 * 8 7 6 10 10 H 1.09009 * 109.49845 * 62.32148 * 9 8 7 11 11 C 1.50700 * 109.50544 * 182.39874 * 9 8 7 12 12 H 1.08001 * 119.99673 * 32.30290 * 11 9 8 13 13 C 1.37881 * 119.99929 * 212.30375 * 11 9 8 14 14 N 1.31512 * 119.99911 * 351.82277 * 13 11 9 15 15 Si 1.86800 * 119.99800 * 171.82235 * 13 11 9 16 16 H 1.48499 * 109.46807 * 90.00006 * 15 13 11 17 17 H 1.48500 * 109.47046 * 330.00320 * 15 13 11 18 18 H 1.48500 * 109.47061 * 210.00170 * 15 13 11 19 19 C 1.46846 * 110.99579 * 191.57892 * 5 4 2 20 20 C 1.50698 * 109.47589 * 120.00181 * 2 1 3 21 21 O 1.20825 * 119.99704 * 94.99959 * 20 2 1 22 22 O 1.34223 * 119.99983 * 275.00294 * 20 2 1 23 23 C 1.45194 * 117.00142 * 180.02562 * 22 20 2 24 24 C 1.50701 * 109.47318 * 179.97438 * 23 22 20 25 25 C 1.38237 * 120.00046 * 269.72132 * 24 23 22 26 26 C 1.38238 * 119.99940 * 179.78580 * 25 24 23 27 27 C 1.38236 * 119.99869 * 0.44652 * 26 25 24 28 28 C 1.38237 * 120.00061 * 359.80893 * 27 26 25 29 29 C 1.38234 * 120.00285 * 359.97438 * 28 27 26 30 30 H 1.09003 * 109.46659 * 184.07845 * 1 2 3 31 31 H 1.08998 * 109.46532 * 304.07090 * 1 2 3 32 32 H 1.08994 * 109.47557 * 64.07189 * 1 2 3 33 33 H 0.96703 * 113.99791 * 180.02562 * 3 2 1 34 34 H 1.09008 * 109.46801 * 293.63746 * 4 2 1 35 35 H 1.08994 * 109.47325 * 173.64149 * 4 2 1 36 36 H 1.08995 * 109.46950 * 65.82044 * 6 5 4 37 37 H 1.09005 * 109.46262 * 305.84705 * 6 5 4 38 38 H 1.09002 * 109.49938 * 180.87617 * 7 6 5 39 39 H 1.09000 * 109.49970 * 60.75698 * 7 6 5 40 40 H 1.08996 * 109.52720 * 297.74783 * 8 7 6 41 41 H 1.09008 * 109.57210 * 177.58924 * 8 7 6 42 42 H 0.97002 * 120.00261 * 4.16604 * 14 13 11 43 43 H 1.08999 * 109.46398 * 54.15223 * 19 5 4 44 44 H 1.08997 * 109.46576 * 294.17408 * 19 5 4 45 45 H 1.09003 * 109.46722 * 299.99409 * 23 22 20 46 46 H 1.09001 * 109.47778 * 59.99471 * 23 22 20 47 47 H 1.07993 * 119.99660 * 359.97438 * 25 24 23 48 48 H 1.07994 * 120.00220 * 180.27602 * 26 25 24 49 49 H 1.07999 * 119.99729 * 179.83389 * 27 26 25 50 50 H 1.08000 * 119.99933 * 180.02562 * 28 27 26 51 51 H 1.07997 * 120.00036 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.4289 -0.1229 -2.4438 6 6 1.9068 1.2506 -2.6474 7 6 1.1440 1.8904 -3.8098 8 6 1.3648 1.0602 -5.0772 9 6 0.9038 -0.3777 -4.8228 10 1 -0.1641 -0.3841 -4.6043 11 6 1.1721 -1.2159 -6.0461 12 1 2.0238 -0.9984 -6.6736 13 6 0.3303 -2.2606 -6.3642 14 7 -0.6093 -2.6281 -5.5207 15 14 0.5244 -3.1536 -7.9934 16 1 1.4658 -4.2898 -7.8258 17 1 1.0586 -2.2144 -9.0121 18 1 -0.7966 -3.6665 -8.4372 19 6 1.6735 -0.9517 -3.6311 20 6 2.0325 -0.7104 1.2304 21 8 2.3199 -1.8827 1.1760 22 8 2.1607 -0.0409 2.3866 23 6 2.6509 -0.7887 3.5306 24 6 2.7289 0.1211 4.7295 25 6 3.8909 0.8231 4.9899 26 6 3.9610 1.6610 6.0871 27 6 2.8723 1.7897 6.9291 28 6 1.7121 1.0836 6.6717 29 6 1.6404 0.2492 5.5719 30 1 -0.3633 -1.0251 0.0731 31 1 -0.3632 0.5757 0.8513 32 1 -0.3634 0.4493 -0.9241 33 1 2.9703 1.4237 -0.0004 34 1 1.7726 -1.7765 -1.1942 35 1 3.1240 -0.6237 -1.3081 36 1 2.9721 1.2343 -2.8774 37 1 1.7400 1.8314 -1.7402 38 1 1.5097 2.9046 -3.9706 39 1 0.0800 1.9196 -3.5745 40 1 2.4239 1.0630 -5.3346 41 1 0.7892 1.4873 -5.8984 42 1 -0.7495 -2.1268 -4.7022 43 1 1.3373 -1.9705 -3.4384 44 1 2.7399 -0.9577 -3.8565 45 1 1.9710 -1.6136 3.7437 46 1 3.6426 -1.1831 3.3090 47 1 4.7429 0.7193 4.3344 48 1 4.8673 2.2129 6.2881 49 1 2.9280 2.4423 7.7879 50 1 0.8613 1.1845 7.3293 51 1 0.7341 -0.3028 5.3711 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253632846.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:11 Heat of formation + Delta-G solvation = -111.055136 kcal Electronic energy + Delta-G solvation = -30911.081249 eV Core-core repulsion = 26775.126005 eV Total energy + Delta-G solvation = -4135.955243 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.03057 -39.62004 -38.77981 -37.00297 -36.62122 -33.70921 -32.57335 -32.45748 -31.31815 -30.86819 -29.41946 -27.12334 -26.43621 -24.48015 -24.01930 -23.00467 -22.07555 -21.70222 -21.50782 -20.22935 -18.97590 -18.48815 -17.57590 -16.87590 -16.79136 -16.67056 -15.75931 -15.58085 -15.46160 -14.94994 -14.50811 -14.25482 -13.87943 -13.79150 -13.72133 -13.66253 -13.40693 -13.35241 -12.94089 -12.82600 -12.63964 -12.42631 -12.33002 -12.02923 -11.95801 -11.55080 -11.51353 -11.38273 -11.27760 -11.08857 -10.90593 -10.87711 -10.71400 -10.45595 -10.27162 -10.10031 -9.81712 -9.37968 -9.32582 -9.19689 -9.11116 -8.50169 -8.20565 -7.71340 -6.33241 -4.03103 0.76936 0.99888 1.94981 2.42860 3.43370 3.44509 3.48492 3.64119 3.94234 4.16602 4.37613 4.42589 4.54858 4.59446 4.66102 4.71080 4.77045 4.80595 4.93971 5.03850 5.10155 5.22368 5.39335 5.52938 5.56735 5.62032 5.69050 5.73155 5.79537 5.87989 5.89009 6.00064 6.01417 6.09462 6.14531 6.15430 6.18279 6.37856 6.40799 6.47349 6.55595 6.56363 6.63607 6.83668 6.90308 6.95459 7.21288 7.48375 7.58959 7.60167 7.72933 7.77103 8.33694 8.49438 8.93533 9.69703 11.06930 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.023835 B = 0.002046 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.470866 B =13680.644428 C =14208.878445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.159 3.841 3 O -0.528 6.528 4 C 0.041 3.959 5 N -0.529 5.529 6 C 0.036 3.964 7 C -0.115 4.115 8 C -0.107 4.107 9 C 0.038 3.962 10 H 0.042 0.958 11 C -0.597 4.597 12 H 0.047 0.953 13 C 0.021 3.979 14 N -0.910 5.910 15 Si 1.068 2.932 16 H -0.289 1.289 17 H -0.289 1.289 18 H -0.284 1.284 19 C 0.068 3.932 20 C 0.438 3.562 21 O -0.498 6.498 22 O -0.339 6.339 23 C 0.103 3.897 24 C -0.095 4.095 25 C -0.095 4.095 26 C -0.123 4.123 27 C -0.111 4.111 28 C -0.123 4.123 29 C -0.094 4.094 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.377 0.623 34 H 0.095 0.905 35 H 0.033 0.967 36 H 0.016 0.984 37 H 0.103 0.897 38 H 0.049 0.951 39 H 0.062 0.938 40 H 0.040 0.960 41 H 0.049 0.951 42 H 0.274 0.726 43 H 0.064 0.936 44 H 0.015 0.985 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.124 0.876 48 H 0.125 0.875 49 H 0.124 0.876 50 H 0.125 0.875 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.996 9.132 23.882 26.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.116 3.884 3 O -0.334 6.334 4 C -0.088 4.088 5 N -0.253 5.253 6 C -0.092 4.092 7 C -0.153 4.153 8 C -0.144 4.144 9 C 0.019 3.981 10 H 0.060 0.940 11 C -0.635 4.635 12 H 0.065 0.935 13 C -0.184 4.184 14 N -0.545 5.545 15 Si 0.897 3.103 16 H -0.216 1.216 17 H -0.215 1.215 18 H -0.210 1.210 19 C -0.058 4.058 20 C 0.279 3.721 21 O -0.385 6.385 22 O -0.256 6.256 23 C 0.029 3.971 24 C -0.095 4.095 25 C -0.113 4.113 26 C -0.141 4.141 27 C -0.129 4.129 28 C -0.141 4.141 29 C -0.112 4.112 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.225 0.775 34 H 0.113 0.887 35 H 0.051 0.949 36 H 0.034 0.966 37 H 0.121 0.879 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.033 0.967 45 H 0.098 0.902 46 H 0.097 0.903 47 H 0.142 0.858 48 H 0.143 0.857 49 H 0.142 0.858 50 H 0.143 0.857 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.358 7.642 23.066 24.883 hybrid contribution 2.360 0.813 0.888 2.649 sum 7.717 8.455 23.955 26.549 Atomic orbital electron populations 1.21697 0.88706 1.03301 1.05004 1.21272 0.97922 0.81918 0.87302 1.86620 1.26875 1.24344 1.95573 1.22521 0.96382 0.99974 0.89930 1.62059 1.57508 1.02740 1.03034 1.22629 0.95768 0.90347 1.00431 1.21616 1.00462 0.97483 0.95747 1.21650 0.99665 0.97766 0.95367 1.18875 0.96236 0.90921 0.92083 0.93993 1.21938 1.13819 1.17859 1.09909 0.93506 1.25810 0.93690 0.95854 1.03022 1.70750 1.33449 1.38763 1.11581 0.83567 0.76151 0.75644 0.74982 1.21625 1.21537 1.20995 1.22592 0.97936 0.96406 0.88913 1.25088 0.74686 0.86879 0.85447 1.90694 1.45272 1.17251 1.85264 1.86682 1.76820 1.43757 1.18318 1.21841 1.00571 0.92738 0.81906 1.19509 0.94901 0.99569 0.95523 1.21098 0.97484 0.95481 0.97239 1.21169 0.98964 0.98886 0.95117 1.21252 0.93354 0.98933 0.99356 1.21177 0.98253 0.97029 0.97640 1.21120 0.97659 0.98056 0.94404 0.90742 0.91825 0.87896 0.77496 0.88716 0.94867 0.96588 0.87931 0.93210 0.91952 0.94141 0.93175 0.91429 0.91734 0.96654 0.90207 0.90318 0.85803 0.85700 0.85832 0.85667 0.85713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 8.67 37.16 0.32 -1.46 16 2 C 0.16 2.17 1.05 -91.77 -0.10 2.07 16 3 O -0.53 -6.48 9.42 -49.12 -0.46 -6.94 16 4 C 0.04 0.66 3.96 -3.82 -0.02 0.64 16 5 N -0.53 -9.71 3.53 -234.66 -0.83 -10.54 16 6 C 0.04 0.59 5.08 -3.83 -0.02 0.57 16 7 C -0.12 -2.04 6.09 -26.65 -0.16 -2.20 16 8 C -0.11 -2.27 5.27 -26.61 -0.14 -2.41 16 9 C 0.04 0.94 2.00 -91.69 -0.18 0.76 16 10 H 0.04 1.13 6.68 -51.92 -0.35 0.79 16 11 C -0.60 -16.56 8.31 -34.44 -0.29 -16.85 16 12 H 0.05 1.31 7.83 -52.49 -0.41 0.90 16 13 C 0.02 0.61 5.44 -17.82 -0.10 0.51 16 14 N -0.91 -27.17 13.62 55.43 0.75 -26.41 16 15 Si 1.07 25.21 29.91 -169.99 -5.08 20.13 16 16 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 17 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 C 0.07 1.53 4.72 -3.83 -0.02 1.52 16 20 C 0.44 6.00 6.80 36.00 0.24 6.24 16 21 O -0.50 -7.98 15.71 -18.75 -0.29 -8.27 16 22 O -0.34 -4.17 9.96 -44.41 -0.44 -4.61 16 23 C 0.10 1.05 5.59 36.01 0.20 1.25 16 24 C -0.09 -0.88 5.52 -104.62 -0.58 -1.46 16 25 C -0.09 -0.78 9.70 -39.58 -0.38 -1.17 16 26 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 27 C -0.11 -0.76 10.05 -39.58 -0.40 -1.16 16 28 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 29 C -0.09 -0.80 9.70 -39.58 -0.38 -1.18 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.10 1.56 7.30 -51.93 -0.38 1.18 16 33 H 0.38 3.47 9.04 45.56 0.41 3.88 16 34 H 0.09 1.67 7.45 -51.92 -0.39 1.28 16 35 H 0.03 0.51 8.11 -51.93 -0.42 0.09 16 36 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.10 1.53 4.84 -51.93 -0.25 1.28 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.05 1.08 8.14 -51.92 -0.42 0.65 16 42 H 0.27 8.16 6.69 -40.82 -0.27 7.88 16 43 H 0.06 1.59 8.00 -51.93 -0.42 1.18 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 46 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 47 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 48 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 49 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 50 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 51 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 409.01 15.07 6.16 6.16 Total: -1.00 -31.90 409.01 -10.59 -42.49 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -7.60 Total: 4.88 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: -2.79 Total: -16.89 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: -0.07 Total: -36.95 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -1.20 Total: -19.82 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -5.08 Total: 20.13 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -31.90 -10.59 -42.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253632846.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.564 kcal (2) G-P(sol) polarization free energy of solvation -31.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds