Wall clock time and date at job start Wed Apr 1 2020 04:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42903 * 109.46804 * 2 1 4 4 C 1.53001 * 109.46964 * 240.00476 * 2 1 3 5 5 N 1.46906 * 109.47192 * 53.63317 * 4 2 1 6 6 C 1.46843 * 110.99491 * 67.37502 * 5 4 2 7 7 C 1.53046 * 109.52106 * 185.83936 * 6 5 4 8 8 C 1.53115 * 109.27278 * 300.81465 * 7 6 5 9 9 C 1.53123 * 109.16337 * 57.65738 * 8 7 6 10 10 H 1.09009 * 109.49845 * 62.32148 * 9 8 7 11 11 C 1.50700 * 109.50544 * 182.39874 * 9 8 7 12 12 H 1.08001 * 119.99673 * 32.30290 * 11 9 8 13 13 C 1.37881 * 119.99929 * 212.30375 * 11 9 8 14 14 N 1.31512 * 119.99911 * 351.82277 * 13 11 9 15 15 Si 1.86800 * 119.99800 * 171.82235 * 13 11 9 16 16 H 1.48499 * 109.46807 * 90.00006 * 15 13 11 17 17 H 1.48500 * 109.47046 * 330.00320 * 15 13 11 18 18 H 1.48500 * 109.47061 * 210.00170 * 15 13 11 19 19 C 1.46846 * 110.99579 * 191.57892 * 5 4 2 20 20 C 1.50698 * 109.47589 * 120.00181 * 2 1 3 21 21 O 1.20825 * 119.99704 * 94.99959 * 20 2 1 22 22 O 1.34223 * 119.99983 * 275.00294 * 20 2 1 23 23 C 1.45194 * 117.00142 * 180.02562 * 22 20 2 24 24 C 1.50701 * 109.47318 * 179.97438 * 23 22 20 25 25 C 1.38237 * 120.00046 * 269.72132 * 24 23 22 26 26 C 1.38238 * 119.99940 * 179.78580 * 25 24 23 27 27 C 1.38236 * 119.99869 * 0.44652 * 26 25 24 28 28 C 1.38237 * 120.00061 * 359.80893 * 27 26 25 29 29 C 1.38234 * 120.00285 * 359.97438 * 28 27 26 30 30 H 1.09003 * 109.46659 * 184.07845 * 1 2 3 31 31 H 1.08998 * 109.46532 * 304.07090 * 1 2 3 32 32 H 1.08994 * 109.47557 * 64.07189 * 1 2 3 33 33 H 0.96703 * 113.99791 * 180.02562 * 3 2 1 34 34 H 1.09008 * 109.46801 * 293.63746 * 4 2 1 35 35 H 1.08994 * 109.47325 * 173.64149 * 4 2 1 36 36 H 1.08995 * 109.46950 * 65.82044 * 6 5 4 37 37 H 1.09005 * 109.46262 * 305.84705 * 6 5 4 38 38 H 1.09002 * 109.49938 * 180.87617 * 7 6 5 39 39 H 1.09000 * 109.49970 * 60.75698 * 7 6 5 40 40 H 1.08996 * 109.52720 * 297.74783 * 8 7 6 41 41 H 1.09008 * 109.57210 * 177.58924 * 8 7 6 42 42 H 0.97002 * 120.00261 * 4.16604 * 14 13 11 43 43 H 1.08999 * 109.46398 * 54.15223 * 19 5 4 44 44 H 1.08997 * 109.46576 * 294.17408 * 19 5 4 45 45 H 1.09003 * 109.46722 * 299.99409 * 23 22 20 46 46 H 1.09001 * 109.47778 * 59.99471 * 23 22 20 47 47 H 1.07993 * 119.99660 * 359.97438 * 25 24 23 48 48 H 1.07994 * 120.00220 * 180.27602 * 26 25 24 49 49 H 1.07999 * 119.99729 * 179.83389 * 27 26 25 50 50 H 1.08000 * 119.99933 * 180.02562 * 28 27 26 51 51 H 1.07997 * 120.00036 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.4289 -0.1229 -2.4438 6 6 1.9068 1.2506 -2.6474 7 6 1.1440 1.8904 -3.8098 8 6 1.3648 1.0602 -5.0772 9 6 0.9038 -0.3777 -4.8228 10 1 -0.1641 -0.3841 -4.6043 11 6 1.1721 -1.2159 -6.0461 12 1 2.0238 -0.9984 -6.6736 13 6 0.3303 -2.2606 -6.3642 14 7 -0.6093 -2.6281 -5.5207 15 14 0.5244 -3.1536 -7.9934 16 1 1.4658 -4.2898 -7.8258 17 1 1.0586 -2.2144 -9.0121 18 1 -0.7966 -3.6665 -8.4372 19 6 1.6735 -0.9517 -3.6311 20 6 2.0325 -0.7104 1.2304 21 8 2.3199 -1.8827 1.1760 22 8 2.1607 -0.0409 2.3866 23 6 2.6509 -0.7887 3.5306 24 6 2.7289 0.1211 4.7295 25 6 3.8909 0.8231 4.9899 26 6 3.9610 1.6610 6.0871 27 6 2.8723 1.7897 6.9291 28 6 1.7121 1.0836 6.6717 29 6 1.6404 0.2492 5.5719 30 1 -0.3633 -1.0251 0.0731 31 1 -0.3632 0.5757 0.8513 32 1 -0.3634 0.4493 -0.9241 33 1 2.9703 1.4237 -0.0004 34 1 1.7726 -1.7765 -1.1942 35 1 3.1240 -0.6237 -1.3081 36 1 2.9721 1.2343 -2.8774 37 1 1.7400 1.8314 -1.7402 38 1 1.5097 2.9046 -3.9706 39 1 0.0800 1.9196 -3.5745 40 1 2.4239 1.0630 -5.3346 41 1 0.7892 1.4873 -5.8984 42 1 -0.7495 -2.1268 -4.7022 43 1 1.3373 -1.9705 -3.4384 44 1 2.7399 -0.9577 -3.8565 45 1 1.9710 -1.6136 3.7437 46 1 3.6426 -1.1831 3.3090 47 1 4.7429 0.7193 4.3344 48 1 4.8673 2.2129 6.2881 49 1 2.9280 2.4423 7.7879 50 1 0.8613 1.1845 7.3293 51 1 0.7341 -0.3028 5.3711 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001253632846.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:10 Heat of formation + Delta-G solvation = -128.930434 kcal Electronic energy + Delta-G solvation = -30911.856380 eV Core-core repulsion = 26775.126005 eV Total energy + Delta-G solvation = -4136.730374 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.11950 -40.44401 -39.95962 -38.30876 -37.69346 -35.50455 -34.09466 -33.21565 -32.14513 -31.86093 -31.24069 -27.90281 -27.76580 -26.52129 -25.20463 -23.55788 -23.55440 -23.30347 -22.28115 -21.38616 -20.63278 -19.62542 -18.80127 -18.42348 -17.75259 -17.56873 -16.92273 -16.62677 -16.25479 -16.00374 -15.84822 -15.66790 -15.61928 -15.32212 -14.89421 -14.74180 -14.36922 -14.33008 -14.06787 -13.96383 -13.81192 -13.60916 -13.51575 -13.37648 -13.19837 -13.13062 -12.78790 -12.70815 -12.62597 -12.18464 -12.12444 -12.09733 -11.96297 -11.89441 -11.76411 -11.68028 -11.44339 -11.01898 -10.83983 -10.58253 -10.20267 -9.88244 -9.84298 -9.23561 -8.59556 -6.29509 0.14565 0.44347 0.84737 1.46291 1.52217 1.60993 1.78592 2.57294 2.78994 2.90155 3.01260 3.25033 3.42425 3.51825 3.70964 3.73217 3.75678 4.07357 4.13553 4.17779 4.19847 4.21630 4.23683 4.27698 4.40219 4.50162 4.56893 4.57792 4.67240 4.73953 4.76358 4.78268 4.83430 4.88787 4.97196 4.99507 5.09383 5.11132 5.15428 5.22816 5.29115 5.30994 5.49198 5.55095 5.56281 5.59900 5.74432 5.94986 6.02418 6.18459 6.26600 6.30591 6.32500 6.59692 6.71092 7.50971 8.80518 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.023835 B = 0.002046 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.470866 B =13680.644428 C =14208.878445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.172 3.828 3 O -0.526 6.526 4 C 0.044 3.956 5 N -0.532 5.532 6 C 0.038 3.962 7 C -0.109 4.109 8 C -0.102 4.102 9 C 0.033 3.967 10 H 0.011 0.989 11 C -0.609 4.609 12 H 0.041 0.959 13 C -0.030 4.030 14 N -0.935 5.935 15 Si 1.113 2.887 16 H -0.277 1.277 17 H -0.272 1.272 18 H -0.283 1.283 19 C 0.087 3.913 20 C 0.448 3.552 21 O -0.525 6.525 22 O -0.337 6.337 23 C 0.101 3.899 24 C -0.113 4.113 25 C -0.106 4.106 26 C -0.129 4.129 27 C -0.113 4.113 28 C -0.129 4.129 29 C -0.109 4.109 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.393 0.607 34 H 0.073 0.927 35 H 0.043 0.957 36 H 0.022 0.978 37 H 0.130 0.870 38 H 0.083 0.917 39 H 0.056 0.944 40 H 0.040 0.960 41 H 0.042 0.958 42 H 0.261 0.739 43 H 0.031 0.969 44 H 0.008 0.992 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.132 0.868 48 H 0.146 0.854 49 H 0.148 0.852 50 H 0.145 0.855 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.198 11.163 25.425 28.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.129 3.871 3 O -0.334 6.334 4 C -0.085 4.085 5 N -0.256 5.256 6 C -0.088 4.088 7 C -0.147 4.147 8 C -0.140 4.140 9 C 0.014 3.986 10 H 0.029 0.971 11 C -0.648 4.648 12 H 0.059 0.941 13 C -0.229 4.229 14 N -0.572 5.572 15 Si 0.936 3.064 16 H -0.203 1.203 17 H -0.197 1.197 18 H -0.209 1.209 19 C -0.041 4.041 20 C 0.290 3.710 21 O -0.414 6.414 22 O -0.253 6.253 23 C 0.028 3.972 24 C -0.114 4.114 25 C -0.124 4.124 26 C -0.146 4.146 27 C -0.130 4.130 28 C -0.147 4.147 29 C -0.127 4.127 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.244 0.756 34 H 0.091 0.909 35 H 0.062 0.938 36 H 0.040 0.960 37 H 0.147 0.853 38 H 0.101 0.899 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.049 0.951 44 H 0.026 0.974 45 H 0.097 0.903 46 H 0.101 0.899 47 H 0.150 0.850 48 H 0.164 0.836 49 H 0.166 0.834 50 H 0.163 0.837 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.587 9.713 24.637 27.290 hybrid contribution 2.031 0.263 0.529 2.115 sum 8.618 9.976 25.167 28.411 Atomic orbital electron populations 1.21663 0.88791 1.03164 1.04985 1.20891 0.97743 0.82261 0.86225 1.86572 1.28587 1.22889 1.95326 1.22468 0.96891 0.99109 0.90068 1.61930 1.58377 1.03238 1.02101 1.22745 0.95803 0.89049 1.01236 1.21590 1.00566 0.98550 0.93994 1.21542 0.99182 0.96002 0.97258 1.18840 0.94704 0.93041 0.92029 0.97099 1.22312 1.13388 1.18099 1.10968 0.94087 1.27209 0.93190 0.96969 1.05550 1.70868 1.34974 1.39515 1.11853 0.82980 0.76443 0.75346 0.71642 1.20320 1.19672 1.20872 1.22087 0.96589 0.95250 0.90129 1.24900 0.73991 0.86283 0.85847 1.90692 1.46597 1.18407 1.85731 1.86664 1.76493 1.43815 1.18330 1.22001 1.00628 0.93006 0.81520 1.19532 0.95873 1.00475 0.95471 1.21304 0.97458 0.95671 0.98005 1.21486 0.99995 0.98554 0.94611 1.21623 0.92902 0.98679 0.99836 1.21477 0.99258 0.96532 0.97452 1.21312 0.97747 0.98665 0.94972 0.91357 0.90067 0.89300 0.75579 0.90884 0.93843 0.95972 0.85319 0.89868 0.92516 0.94151 0.93946 0.92828 0.95066 0.97416 0.90261 0.89940 0.85006 0.83601 0.83417 0.83743 0.85314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.45 8.67 71.98 0.62 -2.83 16 2 C 0.17 4.50 1.05 -11.54 -0.01 4.49 16 3 O -0.53 -11.44 9.42 -135.70 -1.28 -12.72 16 4 C 0.04 1.39 3.96 86.30 0.34 1.73 16 5 N -0.53 -19.55 3.53 -896.33 -3.17 -22.71 16 6 C 0.04 1.19 5.08 86.33 0.44 1.63 16 7 C -0.11 -3.67 6.09 30.65 0.19 -3.48 16 8 C -0.10 -4.31 5.27 30.67 0.16 -4.15 16 9 C 0.03 1.68 2.00 -11.49 -0.02 1.66 16 10 H 0.01 0.61 6.68 -2.38 -0.02 0.60 16 11 C -0.61 -34.68 8.31 25.60 0.21 -34.47 16 12 H 0.04 2.33 7.83 -2.91 -0.02 2.30 16 13 C -0.03 -1.76 5.44 84.66 0.46 -1.30 16 14 N -0.93 -57.87 13.62 21.45 0.29 -57.58 16 15 Si 1.11 51.22 29.91 68.60 2.05 53.27 16 16 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 17 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 19 C 0.09 4.05 4.72 86.33 0.41 4.46 16 20 C 0.45 11.91 6.80 71.24 0.48 12.39 16 21 O -0.53 -16.85 15.71 21.97 0.35 -16.50 16 22 O -0.34 -7.87 9.96 -46.41 -0.46 -8.33 16 23 C 0.10 2.00 5.59 71.24 0.40 2.40 16 24 C -0.11 -1.98 5.52 -19.86 -0.11 -2.09 16 25 C -0.11 -1.60 9.70 22.27 0.22 -1.38 16 26 C -0.13 -1.55 10.05 22.27 0.22 -1.32 16 27 C -0.11 -1.25 10.05 22.27 0.22 -1.03 16 28 C -0.13 -1.62 10.05 22.27 0.22 -1.40 16 29 C -0.11 -1.72 9.70 22.27 0.22 -1.50 16 30 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.09 2.66 7.30 -2.39 -0.02 2.64 16 33 H 0.39 5.94 9.04 -74.05 -0.67 5.27 16 34 H 0.07 2.67 7.45 -2.38 -0.02 2.66 16 35 H 0.04 1.30 8.11 -2.39 -0.02 1.28 16 36 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.13 3.42 4.84 -2.38 -0.01 3.41 16 38 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 42 H 0.26 16.39 6.69 -92.71 -0.62 15.77 16 43 H 0.03 1.62 8.00 -2.39 -0.02 1.60 16 44 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 45 H 0.08 1.55 8.08 -2.39 -0.02 1.53 16 46 H 0.08 1.54 8.08 -2.39 -0.02 1.52 16 47 H 0.13 1.64 8.06 -2.91 -0.02 1.62 16 48 H 0.15 1.06 8.06 -2.91 -0.02 1.03 16 49 H 0.15 0.86 8.06 -2.91 -0.02 0.84 16 50 H 0.14 1.16 8.06 -2.91 -0.02 1.13 16 51 H 0.13 1.80 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -70.75 409.01 2.85 -67.90 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.40 Total: 22.86 kcal Atomic # 6 Polarization: -30.86 SS G_CDS: 4.67 Total: -26.18 kcal Atomic # 7 Polarization: -77.41 SS G_CDS: -2.88 Total: -80.29 kcal Atomic # 8 Polarization: -36.16 SS G_CDS: -1.40 Total: -37.56 kcal Atomic # 14 Polarization: 51.22 SS G_CDS: 2.05 Total: 53.27 kcal Total: -70.75 2.85 -67.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253632846.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.027 kcal (2) G-P(sol) polarization free energy of solvation -70.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds