Wall clock time and date at job start Wed Apr 1 2020 05:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42899 * 109.47552 * 2 1 4 4 C 1.53004 * 109.46715 * 119.99995 * 2 1 3 5 5 N 1.46890 * 109.47318 * 305.00086 * 4 2 1 6 6 C 1.46900 * 111.00192 * 180.02562 * 5 4 2 7 7 H 1.08993 * 109.41529 * 35.13691 * 6 5 4 8 8 C 1.52955 * 109.41573 * 154.99739 * 6 5 4 9 9 C 1.53230 * 109.40686 * 183.62903 * 8 6 5 10 10 C 1.51264 * 108.54060 * 305.37674 * 9 8 6 11 11 C 1.37878 * 120.84937 * 231.36843 * 10 9 8 12 12 N 1.31514 * 119.99763 * 179.97438 * 11 10 9 13 13 Si 1.86797 * 120.00109 * 359.97186 * 11 10 9 14 14 H 1.48504 * 109.47027 * 90.00087 * 13 11 10 15 15 H 1.48501 * 109.47194 * 210.00066 * 13 11 10 16 16 H 1.48503 * 109.46893 * 330.00390 * 13 11 10 17 17 C 1.51270 * 118.29993 * 51.34019 * 10 9 8 18 18 C 1.53232 * 108.69741 * 308.56051 * 17 10 9 19 19 C 1.50703 * 109.47350 * 239.99754 * 2 1 3 20 20 O 1.20819 * 120.00053 * 265.00948 * 19 2 1 21 21 O 1.34224 * 119.99608 * 84.99972 * 19 2 1 22 22 C 1.45205 * 116.99683 * 180.02562 * 21 19 2 23 23 C 1.50705 * 109.46952 * 180.02562 * 22 21 19 24 24 C 1.38230 * 120.00167 * 269.72820 * 23 22 21 25 25 C 1.38234 * 120.00194 * 179.76521 * 24 23 22 26 26 C 1.38241 * 119.99714 * 0.51321 * 25 24 23 27 27 C 1.38237 * 119.99684 * 359.73884 * 26 25 24 28 28 C 1.38224 * 120.00113 * 0.02562 * 27 26 25 29 29 H 1.09003 * 109.47478 * 300.00680 * 1 2 3 30 30 H 1.09013 * 109.46979 * 59.99642 * 1 2 3 31 31 H 1.09002 * 109.47701 * 179.97438 * 1 2 3 32 32 H 0.96700 * 114.00326 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.47115 * 184.99537 * 4 2 1 34 34 H 1.09005 * 109.46976 * 65.00190 * 4 2 1 35 35 H 1.00910 * 111.00024 * 303.94948 * 5 4 2 36 36 H 1.09007 * 109.48519 * 63.65497 * 8 6 5 37 37 H 1.09003 * 109.48614 * 303.61262 * 8 6 5 38 38 H 1.09001 * 109.62928 * 185.65483 * 9 8 6 39 39 H 1.09011 * 109.78008 * 65.18528 * 9 8 6 40 40 H 0.97006 * 119.99939 * 180.02562 * 12 11 10 41 41 H 1.09002 * 109.62532 * 68.37253 * 17 10 9 42 42 H 1.09001 * 109.62715 * 188.74940 * 17 10 9 43 43 H 1.08993 * 109.48218 * 174.70373 * 18 17 10 44 44 H 1.08997 * 109.48080 * 294.74309 * 18 17 10 45 45 H 1.08997 * 109.47336 * 300.00558 * 22 21 19 46 46 H 1.09004 * 109.47083 * 60.00776 * 22 21 19 47 47 H 1.08002 * 119.99940 * 359.97438 * 24 23 22 48 48 H 1.08000 * 120.00304 * 180.22461 * 25 24 23 49 49 H 1.07994 * 119.99720 * 179.72301 * 26 25 24 50 50 H 1.08006 * 119.99458 * 179.97438 * 27 26 25 51 51 H 1.08003 * 119.99794 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.4541 -0.1021 2.4456 6 6 1.9228 -0.7699 3.6672 7 1 2.9572 -1.0861 3.5332 8 6 1.8372 0.2038 4.8437 9 6 2.4103 -0.4627 6.0989 10 6 1.6877 -1.7730 6.3203 11 6 1.1300 -2.0747 7.5446 12 7 0.5050 -3.2187 7.7185 13 14 1.2622 -0.8586 8.9564 14 1 0.0952 0.0595 8.9298 15 1 1.2823 -1.5963 10.2450 16 1 2.5140 -0.0721 8.8166 17 6 1.5921 -2.7435 5.1640 18 6 1.0465 -1.9985 3.9412 19 6 2.0323 -0.7105 -1.2304 20 8 2.3196 -1.8828 -1.1762 21 8 2.1605 -0.0408 -2.3866 22 6 2.6496 -0.7890 -3.5309 23 6 2.7279 0.1208 -4.7298 24 6 1.6412 0.2456 -5.5749 25 6 1.7113 1.0838 -6.6719 26 6 2.8718 1.7893 -6.9296 27 6 3.9604 1.6606 -6.0872 28 6 3.8885 0.8260 -4.9877 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5140 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 2.9704 1.4236 0.0004 33 1 3.1262 -0.6445 1.2952 34 1 1.7515 -1.7716 1.2056 35 1 1.6533 0.8867 2.4754 36 1 0.7953 0.4723 5.0184 37 1 2.4108 1.1020 4.6149 38 1 2.2603 0.1884 6.9601 39 1 3.4756 -0.6504 5.9632 40 1 0.1123 -3.4308 8.5798 41 1 2.5809 -3.1428 4.9383 42 1 0.9188 -3.5598 5.4258 43 1 1.0605 -2.6610 3.0758 44 1 0.0233 -1.6781 4.1374 45 1 3.6411 -1.1843 -3.3098 46 1 1.9690 -1.6134 -3.7439 47 1 0.7362 -0.3094 -5.3764 48 1 0.8610 1.1841 -7.3302 49 1 2.9281 2.4408 -7.7890 50 1 4.8672 2.2114 -6.2888 51 1 4.7391 0.7252 -4.3299 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253655672.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:50 Heat of formation + Delta-G solvation = -121.804278 kcal Electronic energy + Delta-G solvation = -30234.479855 eV Core-core repulsion = 26098.058494 eV Total energy + Delta-G solvation = -4136.421361 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.05687 -39.61719 -38.31421 -37.00955 -36.68982 -34.06436 -32.58825 -32.06533 -31.34969 -30.72305 -29.56598 -27.35665 -27.13942 -25.41424 -23.40609 -23.03611 -21.81657 -21.71019 -21.08638 -20.34445 -19.17827 -18.58287 -17.62192 -16.86530 -16.84299 -16.25888 -15.90381 -15.62138 -15.43740 -14.97735 -14.44960 -14.42042 -14.07145 -13.95171 -13.83870 -13.43375 -13.32215 -13.14996 -12.85108 -12.67998 -12.61658 -12.44875 -12.20823 -11.97225 -11.87823 -11.75857 -11.55028 -11.53771 -11.47678 -10.95771 -10.91831 -10.85435 -10.69745 -10.46287 -10.17652 -10.08746 -9.84718 -9.47824 -9.35731 -9.27506 -8.86010 -8.62296 -8.42929 -8.00301 -6.06014 -3.96471 0.73450 0.96815 1.87966 2.36515 3.28966 3.37500 3.38513 3.39851 3.86808 4.12648 4.34169 4.41062 4.42735 4.51820 4.57618 4.68107 4.72432 4.77134 4.87746 5.00213 5.06730 5.19153 5.23052 5.49741 5.52555 5.58866 5.65508 5.72574 5.75911 5.87651 5.95321 5.97643 6.06518 6.09252 6.11100 6.20869 6.24904 6.52466 6.56901 6.64951 6.82141 6.88904 6.92496 7.07031 7.13047 7.17620 7.44478 7.52086 7.58265 7.68600 7.75822 7.86307 7.92669 8.44245 9.01743 9.58503 11.03638 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.031714 B = 0.001780 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.674655 B =15726.325645 C =15991.158453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.154 3.846 3 O -0.535 6.535 4 C 0.047 3.953 5 N -0.680 5.680 6 C 0.101 3.899 7 H 0.032 0.968 8 C -0.106 4.106 9 C -0.013 4.013 10 C -0.486 4.486 11 C 0.074 3.926 12 N -0.890 5.890 13 Si 0.888 3.112 14 H -0.278 1.278 15 H -0.291 1.291 16 H -0.268 1.268 17 C 0.008 3.992 18 C -0.092 4.092 19 C 0.437 3.563 20 O -0.496 6.496 21 O -0.339 6.339 22 C 0.103 3.897 23 C -0.095 4.095 24 C -0.094 4.094 25 C -0.123 4.123 26 C -0.111 4.111 27 C -0.123 4.123 28 C -0.095 4.095 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.379 0.621 33 H 0.032 0.968 34 H 0.096 0.904 35 H 0.338 0.662 36 H 0.061 0.939 37 H 0.029 0.971 38 H 0.030 0.970 39 H 0.014 0.986 40 H 0.263 0.737 41 H -0.001 1.001 42 H 0.057 0.943 43 H 0.027 0.973 44 H 0.055 0.945 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.125 0.875 48 H 0.125 0.875 49 H 0.124 0.876 50 H 0.125 0.875 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.282 9.863 -27.579 29.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.111 3.889 3 O -0.340 6.340 4 C -0.083 4.083 5 N -0.312 5.312 6 C -0.007 4.007 7 H 0.050 0.950 8 C -0.145 4.145 9 C -0.052 4.052 10 C -0.505 4.505 11 C -0.128 4.128 12 N -0.528 5.528 13 Si 0.716 3.284 14 H -0.204 1.204 15 H -0.217 1.217 16 H -0.193 1.193 17 C -0.030 4.030 18 C -0.131 4.131 19 C 0.278 3.722 20 O -0.383 6.383 21 O -0.256 6.256 22 C 0.030 3.970 23 C -0.096 4.096 24 C -0.113 4.113 25 C -0.141 4.141 26 C -0.129 4.129 27 C -0.141 4.141 28 C -0.113 4.113 29 H 0.118 0.882 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.226 0.774 33 H 0.050 0.950 34 H 0.114 0.886 35 H 0.157 0.843 36 H 0.079 0.921 37 H 0.048 0.952 38 H 0.049 0.951 39 H 0.033 0.967 40 H 0.073 0.927 41 H 0.018 0.982 42 H 0.076 0.924 43 H 0.046 0.954 44 H 0.074 0.926 45 H 0.097 0.903 46 H 0.098 0.902 47 H 0.143 0.857 48 H 0.143 0.857 49 H 0.142 0.858 50 H 0.143 0.857 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.057 9.140 -27.497 29.137 hybrid contribution 1.656 0.600 0.665 1.883 sum 4.713 9.740 -26.832 28.932 Atomic orbital electron populations 1.21673 0.88723 1.03661 1.04538 1.21284 0.97917 0.82116 0.87570 1.86650 1.26917 1.23987 1.96435 1.22435 0.96290 1.00482 0.89120 1.60592 1.62208 1.07218 1.01150 1.21562 0.96370 0.95644 0.87077 0.95028 1.21738 1.00995 0.95406 0.96323 1.19721 0.96151 0.96022 0.93259 1.20028 1.33862 1.00631 0.95970 1.24851 0.94666 0.95286 0.97972 1.69844 1.36197 1.22438 1.24284 0.86668 0.78762 0.81293 0.81650 1.20404 1.21709 1.19339 1.19402 0.95852 0.96372 0.91399 1.21679 0.99143 0.94474 0.97803 1.25026 0.74797 0.86873 0.85496 1.90702 1.45152 1.17200 1.85253 1.86680 1.76840 1.43752 1.18317 1.21852 1.00626 0.92714 0.81838 1.19501 0.94949 0.99587 0.95517 1.21115 0.97654 0.98044 0.94447 1.21180 0.98262 0.96990 0.97671 1.21258 0.93331 0.98931 0.99347 1.21173 0.98969 0.98904 0.95077 1.21099 0.97486 0.95466 0.97234 0.88206 0.91865 0.90501 0.77391 0.95011 0.88561 0.84323 0.92064 0.95224 0.95133 0.96744 0.92667 0.98226 0.92449 0.95421 0.92577 0.90253 0.90176 0.85722 0.85660 0.85817 0.85679 0.85779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 8.61 37.15 0.32 -1.21 16 2 C 0.15 1.87 1.12 -91.77 -0.10 1.77 16 3 O -0.53 -5.90 12.29 -49.12 -0.60 -6.50 16 4 C 0.05 0.66 4.29 -3.83 -0.02 0.64 16 5 N -0.68 -10.54 5.33 -106.54 -0.57 -11.11 16 6 C 0.10 1.93 2.40 -67.54 -0.16 1.76 16 7 H 0.03 0.62 7.80 -51.93 -0.40 0.22 16 8 C -0.11 -2.11 5.24 -26.64 -0.14 -2.25 16 9 C -0.01 -0.31 5.59 -27.49 -0.15 -0.46 16 10 C -0.49 -12.87 5.52 -98.92 -0.55 -13.42 16 11 C 0.07 2.06 5.46 -17.82 -0.10 1.96 16 12 N -0.89 -25.85 12.73 55.43 0.71 -25.15 16 13 Si 0.89 21.23 27.27 -169.99 -4.64 16.59 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.27 -6.21 6.46 56.52 0.37 -5.84 16 17 C 0.01 0.19 5.95 -27.48 -0.16 0.03 16 18 C -0.09 -2.01 5.49 -26.41 -0.14 -2.15 16 19 C 0.44 5.53 6.80 36.01 0.24 5.77 16 20 O -0.50 -7.45 15.74 -18.74 -0.29 -7.74 16 21 O -0.34 -3.89 9.96 -44.41 -0.44 -4.33 16 22 C 0.10 0.98 5.59 36.01 0.20 1.18 16 23 C -0.10 -0.83 5.52 -104.62 -0.58 -1.41 16 24 C -0.09 -0.75 9.70 -39.59 -0.38 -1.13 16 25 C -0.12 -0.84 10.05 -39.58 -0.40 -1.23 16 26 C -0.11 -0.71 10.05 -39.58 -0.40 -1.11 16 27 C -0.12 -0.83 10.05 -39.59 -0.40 -1.23 16 28 C -0.09 -0.74 9.70 -39.59 -0.38 -1.12 16 29 H 0.10 1.26 7.47 -51.93 -0.39 0.87 16 30 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.38 2.98 9.04 45.56 0.41 3.39 16 33 H 0.03 0.43 8.05 -51.93 -0.42 0.02 16 34 H 0.10 1.53 6.90 -51.93 -0.36 1.17 16 35 H 0.34 4.85 7.85 -39.29 -0.31 4.54 16 36 H 0.06 1.27 8.14 -51.92 -0.42 0.84 16 37 H 0.03 0.51 8.05 -51.93 -0.42 0.09 16 38 H 0.03 0.70 4.78 -51.93 -0.25 0.45 16 39 H 0.01 0.33 8.14 -51.92 -0.42 -0.10 16 40 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.00 -0.02 8.14 -51.93 -0.42 -0.44 16 42 H 0.06 1.60 7.07 -51.93 -0.37 1.23 16 43 H 0.03 0.56 7.36 -51.93 -0.38 0.18 16 44 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 46 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 47 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 48 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 49 H 0.12 0.52 8.06 -52.49 -0.42 0.10 16 50 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 51 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 LS Contribution 409.11 15.07 6.17 6.17 Total: -1.00 -30.94 409.11 -10.52 -41.45 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -7.54 Total: 4.25 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -3.30 Total: -13.62 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.14 Total: -36.26 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -1.34 Total: -18.58 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.64 Total: 16.59 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -30.94 -10.52 -41.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253655672.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.354 kcal (2) G-P(sol) polarization free energy of solvation -30.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds