Wall clock time and date at job start Wed Apr 1 2020 05:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42899 * 109.47552 * 2 1 4 4 C 1.53004 * 109.46715 * 119.99995 * 2 1 3 5 5 N 1.46890 * 109.47318 * 305.00086 * 4 2 1 6 6 C 1.46900 * 111.00192 * 180.02562 * 5 4 2 7 7 H 1.08993 * 109.41529 * 35.13691 * 6 5 4 8 8 C 1.52955 * 109.41573 * 154.99739 * 6 5 4 9 9 C 1.53230 * 109.40686 * 183.62903 * 8 6 5 10 10 C 1.51264 * 108.54060 * 305.37674 * 9 8 6 11 11 C 1.37878 * 120.84937 * 231.36843 * 10 9 8 12 12 N 1.31514 * 119.99763 * 179.97438 * 11 10 9 13 13 Si 1.86797 * 120.00109 * 359.97186 * 11 10 9 14 14 H 1.48504 * 109.47027 * 90.00087 * 13 11 10 15 15 H 1.48501 * 109.47194 * 210.00066 * 13 11 10 16 16 H 1.48503 * 109.46893 * 330.00390 * 13 11 10 17 17 C 1.51270 * 118.29993 * 51.34019 * 10 9 8 18 18 C 1.53232 * 108.69741 * 308.56051 * 17 10 9 19 19 C 1.50703 * 109.47350 * 239.99754 * 2 1 3 20 20 O 1.20819 * 120.00053 * 265.00948 * 19 2 1 21 21 O 1.34224 * 119.99608 * 84.99972 * 19 2 1 22 22 C 1.45205 * 116.99683 * 180.02562 * 21 19 2 23 23 C 1.50705 * 109.46952 * 180.02562 * 22 21 19 24 24 C 1.38230 * 120.00167 * 269.72820 * 23 22 21 25 25 C 1.38234 * 120.00194 * 179.76521 * 24 23 22 26 26 C 1.38241 * 119.99714 * 0.51321 * 25 24 23 27 27 C 1.38237 * 119.99684 * 359.73884 * 26 25 24 28 28 C 1.38224 * 120.00113 * 0.02562 * 27 26 25 29 29 H 1.09003 * 109.47478 * 300.00680 * 1 2 3 30 30 H 1.09013 * 109.46979 * 59.99642 * 1 2 3 31 31 H 1.09002 * 109.47701 * 179.97438 * 1 2 3 32 32 H 0.96700 * 114.00326 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.47115 * 184.99537 * 4 2 1 34 34 H 1.09005 * 109.46976 * 65.00190 * 4 2 1 35 35 H 1.00910 * 111.00024 * 303.94948 * 5 4 2 36 36 H 1.09007 * 109.48519 * 63.65497 * 8 6 5 37 37 H 1.09003 * 109.48614 * 303.61262 * 8 6 5 38 38 H 1.09001 * 109.62928 * 185.65483 * 9 8 6 39 39 H 1.09011 * 109.78008 * 65.18528 * 9 8 6 40 40 H 0.97006 * 119.99939 * 180.02562 * 12 11 10 41 41 H 1.09002 * 109.62532 * 68.37253 * 17 10 9 42 42 H 1.09001 * 109.62715 * 188.74940 * 17 10 9 43 43 H 1.08993 * 109.48218 * 174.70373 * 18 17 10 44 44 H 1.08997 * 109.48080 * 294.74309 * 18 17 10 45 45 H 1.08997 * 109.47336 * 300.00558 * 22 21 19 46 46 H 1.09004 * 109.47083 * 60.00776 * 22 21 19 47 47 H 1.08002 * 119.99940 * 359.97438 * 24 23 22 48 48 H 1.08000 * 120.00304 * 180.22461 * 25 24 23 49 49 H 1.07994 * 119.99720 * 179.72301 * 26 25 24 50 50 H 1.08006 * 119.99458 * 179.97438 * 27 26 25 51 51 H 1.08003 * 119.99794 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.4541 -0.1021 2.4456 6 6 1.9228 -0.7699 3.6672 7 1 2.9572 -1.0861 3.5332 8 6 1.8372 0.2038 4.8437 9 6 2.4103 -0.4627 6.0989 10 6 1.6877 -1.7730 6.3203 11 6 1.1300 -2.0747 7.5446 12 7 0.5050 -3.2187 7.7185 13 14 1.2622 -0.8586 8.9564 14 1 0.0952 0.0595 8.9298 15 1 1.2823 -1.5963 10.2450 16 1 2.5140 -0.0721 8.8166 17 6 1.5921 -2.7435 5.1640 18 6 1.0465 -1.9985 3.9412 19 6 2.0323 -0.7105 -1.2304 20 8 2.3196 -1.8828 -1.1762 21 8 2.1605 -0.0408 -2.3866 22 6 2.6496 -0.7890 -3.5309 23 6 2.7279 0.1208 -4.7298 24 6 1.6412 0.2456 -5.5749 25 6 1.7113 1.0838 -6.6719 26 6 2.8718 1.7893 -6.9296 27 6 3.9604 1.6606 -6.0872 28 6 3.8885 0.8260 -4.9877 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5140 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 2.9704 1.4236 0.0004 33 1 3.1262 -0.6445 1.2952 34 1 1.7515 -1.7716 1.2056 35 1 1.6533 0.8867 2.4754 36 1 0.7953 0.4723 5.0184 37 1 2.4108 1.1020 4.6149 38 1 2.2603 0.1884 6.9601 39 1 3.4756 -0.6504 5.9632 40 1 0.1123 -3.4308 8.5798 41 1 2.5809 -3.1428 4.9383 42 1 0.9188 -3.5598 5.4258 43 1 1.0605 -2.6610 3.0758 44 1 0.0233 -1.6781 4.1374 45 1 3.6411 -1.1843 -3.3098 46 1 1.9690 -1.6134 -3.7439 47 1 0.7362 -0.3094 -5.3764 48 1 0.8610 1.1841 -7.3302 49 1 2.9281 2.4408 -7.7890 50 1 4.8672 2.2114 -6.2888 51 1 4.7391 0.7252 -4.3299 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001253655672.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:49 Heat of formation + Delta-G solvation = -140.174055 kcal Electronic energy + Delta-G solvation = -30235.276429 eV Core-core repulsion = 26098.058494 eV Total energy + Delta-G solvation = -4137.217934 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.02367 -40.21707 -39.51648 -38.36452 -37.65662 -35.61273 -33.66527 -33.19619 -32.05104 -31.85512 -31.41125 -28.91801 -27.87985 -26.63257 -24.54244 -23.65696 -23.54847 -22.81472 -22.26324 -21.38757 -20.87597 -19.54554 -18.40518 -18.05587 -17.75850 -17.53518 -17.12512 -16.38502 -16.36270 -16.21485 -15.88317 -15.55472 -15.25754 -15.07403 -14.86125 -14.52313 -14.38016 -14.26215 -14.05403 -13.95626 -13.82268 -13.55076 -13.40114 -13.33180 -13.16556 -12.98071 -12.83715 -12.68553 -12.55770 -12.32872 -12.11114 -12.09164 -11.84726 -11.83008 -11.74892 -11.71165 -11.34720 -11.09819 -10.75078 -10.53237 -10.46830 -9.87727 -9.84152 -9.34265 -8.14304 -6.08596 0.15658 0.44927 0.88534 1.40375 1.42268 1.50701 1.51527 2.42732 2.81677 2.97203 3.09977 3.26293 3.44654 3.60004 3.74195 3.77036 3.81520 4.08469 4.11920 4.18647 4.23130 4.26025 4.28835 4.49110 4.57528 4.59081 4.63963 4.67937 4.80195 4.81565 4.84317 4.98025 5.00113 5.06995 5.09937 5.14647 5.16303 5.21684 5.25282 5.28247 5.29560 5.49846 5.55679 5.56887 5.63962 5.65791 5.79635 5.91285 6.03001 6.10021 6.34568 6.38543 6.58300 6.64946 6.98263 7.49051 8.96988 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.031714 B = 0.001780 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.674655 B =15726.325645 C =15991.158453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.165 3.835 3 O -0.535 6.535 4 C 0.050 3.950 5 N -0.673 5.673 6 C 0.113 3.887 7 H 0.029 0.971 8 C -0.100 4.100 9 C -0.017 4.017 10 C -0.497 4.497 11 C 0.016 3.984 12 N -0.935 5.935 13 Si 0.945 3.055 14 H -0.273 1.273 15 H -0.295 1.295 16 H -0.251 1.251 17 C 0.004 3.996 18 C -0.082 4.082 19 C 0.444 3.556 20 O -0.525 6.525 21 O -0.339 6.339 22 C 0.102 3.898 23 C -0.113 4.113 24 C -0.109 4.109 25 C -0.130 4.130 26 C -0.113 4.113 27 C -0.129 4.129 28 C -0.107 4.107 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.394 0.606 33 H 0.041 0.959 34 H 0.075 0.925 35 H 0.352 0.648 36 H 0.052 0.948 37 H 0.066 0.934 38 H 0.034 0.966 39 H 0.018 0.982 40 H 0.261 0.739 41 H -0.007 1.007 42 H 0.021 0.979 43 H 0.035 0.965 44 H 0.040 0.960 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.130 0.870 48 H 0.145 0.855 49 H 0.148 0.852 50 H 0.146 0.854 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.229 12.894 -29.388 32.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.122 3.878 3 O -0.342 6.342 4 C -0.080 4.080 5 N -0.306 5.306 6 C 0.004 3.996 7 H 0.047 0.953 8 C -0.138 4.138 9 C -0.055 4.055 10 C -0.517 4.517 11 C -0.182 4.182 12 N -0.575 5.575 13 Si 0.771 3.229 14 H -0.198 1.198 15 H -0.221 1.221 16 H -0.175 1.175 17 C -0.034 4.034 18 C -0.120 4.120 19 C 0.286 3.714 20 O -0.413 6.413 21 O -0.255 6.255 22 C 0.029 3.971 23 C -0.113 4.113 24 C -0.127 4.127 25 C -0.147 4.147 26 C -0.131 4.131 27 C -0.147 4.147 28 C -0.125 4.125 29 H 0.113 0.887 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.244 0.756 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.172 0.828 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.052 0.948 39 H 0.037 0.963 40 H 0.070 0.930 41 H 0.011 0.989 42 H 0.040 0.960 43 H 0.054 0.946 44 H 0.059 0.941 45 H 0.100 0.900 46 H 0.098 0.902 47 H 0.148 0.852 48 H 0.163 0.837 49 H 0.165 0.835 50 H 0.163 0.837 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.028 12.215 -29.336 32.032 hybrid contribution 1.407 -0.366 1.076 1.809 sum 5.434 11.848 -28.260 31.122 Atomic orbital electron populations 1.21668 0.88571 1.03519 1.04836 1.21006 0.97933 0.82353 0.86491 1.86635 1.28523 1.22782 1.96274 1.22364 0.96782 0.99516 0.89338 1.60367 1.62228 1.07789 1.00219 1.21252 0.95364 0.94458 0.88523 0.95294 1.21618 1.00831 0.96529 0.94857 1.19755 0.96033 0.94541 0.95187 1.20669 1.33062 1.02042 0.95902 1.25693 0.94923 0.96866 1.00686 1.70000 1.38135 1.24577 1.24762 0.85737 0.79472 0.79293 0.78355 1.19831 1.22141 1.17541 1.19370 0.94733 0.95935 0.93347 1.21472 0.98567 0.95753 0.96253 1.25040 0.74050 0.86359 0.85938 1.90696 1.46532 1.18394 1.85724 1.86667 1.76550 1.43896 1.18429 1.21989 1.00644 0.92960 0.81532 1.19539 0.95864 1.00428 0.95513 1.21312 0.97775 0.98634 0.94965 1.21481 0.99234 0.96504 0.97514 1.21622 0.92921 0.98729 0.99832 1.21484 0.99981 0.98611 0.94616 1.21304 0.97499 0.95699 0.97988 0.88687 0.90746 0.90945 0.75622 0.94107 0.90609 0.82819 0.92872 0.91566 0.94771 0.96313 0.92961 0.98872 0.96035 0.94641 0.94129 0.89989 0.90202 0.85222 0.83737 0.83471 0.83660 0.85024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 8.61 71.98 0.62 -2.25 16 2 C 0.17 3.73 1.12 -11.54 -0.01 3.72 16 3 O -0.53 -10.33 12.29 -135.70 -1.67 -12.00 16 4 C 0.05 1.33 4.29 86.31 0.37 1.70 16 5 N -0.67 -19.42 5.33 -491.00 -2.62 -22.03 16 6 C 0.11 4.10 2.40 45.03 0.11 4.21 16 7 H 0.03 1.09 7.80 -2.39 -0.02 1.07 16 8 C -0.10 -3.72 5.24 30.66 0.16 -3.56 16 9 C -0.02 -0.76 5.59 30.10 0.17 -0.59 16 10 C -0.50 -26.52 5.52 -16.17 -0.09 -26.61 16 11 C 0.02 0.89 5.46 84.65 0.46 1.35 16 12 N -0.93 -56.21 12.73 21.45 0.27 -55.94 16 13 Si 0.95 43.54 27.27 68.60 1.87 45.42 16 14 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 15 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 16 H -0.25 -10.77 6.46 99.48 0.64 -10.13 16 17 C 0.00 0.22 5.95 30.11 0.18 0.40 16 18 C -0.08 -3.57 5.49 30.80 0.17 -3.40 16 19 C 0.44 10.76 6.80 71.24 0.48 11.24 16 20 O -0.52 -15.57 15.74 21.99 0.35 -15.22 16 21 O -0.34 -7.40 9.96 -46.42 -0.46 -7.86 16 22 C 0.10 1.88 5.59 71.24 0.40 2.28 16 23 C -0.11 -1.87 5.52 -19.87 -0.11 -1.98 16 24 C -0.11 -1.61 9.70 22.27 0.22 -1.39 16 25 C -0.13 -1.52 10.05 22.27 0.22 -1.30 16 26 C -0.11 -1.19 10.05 22.27 0.22 -0.96 16 27 C -0.13 -1.48 10.05 22.27 0.22 -1.25 16 28 C -0.11 -1.53 9.70 22.27 0.22 -1.31 16 29 H 0.09 2.23 7.47 -2.39 -0.02 2.21 16 30 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 32 H 0.39 5.00 9.04 -74.06 -0.67 4.33 16 33 H 0.04 1.03 8.05 -2.38 -0.02 1.01 16 34 H 0.08 2.37 6.90 -2.38 -0.02 2.35 16 35 H 0.35 8.89 7.85 -89.69 -0.70 8.19 16 36 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 37 H 0.07 2.01 8.05 -2.39 -0.02 1.99 16 38 H 0.03 1.48 4.78 -2.39 -0.01 1.47 16 39 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 40 H 0.26 14.95 8.31 -92.70 -0.77 14.18 16 41 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 42 H 0.02 1.24 7.07 -2.39 -0.02 1.22 16 43 H 0.03 1.46 7.36 -2.39 -0.02 1.44 16 44 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.08 1.44 8.08 -2.39 -0.02 1.42 16 46 H 0.08 1.45 8.08 -2.38 -0.02 1.43 16 47 H 0.13 1.65 8.06 -2.91 -0.02 1.63 16 48 H 0.14 1.04 8.06 -2.91 -0.02 1.02 16 49 H 0.15 0.78 8.06 -2.91 -0.02 0.76 16 50 H 0.15 0.98 8.06 -2.91 -0.02 0.96 16 51 H 0.13 1.55 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -67.60 409.11 1.26 -66.34 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -0.50 Total: 21.02 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: 4.01 Total: -19.72 kcal Atomic # 7 Polarization: -75.63 SS G_CDS: -2.34 Total: -77.97 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -1.78 Total: -35.08 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.87 Total: 45.42 kcal Total: -67.60 1.26 -66.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253655672.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.836 kcal (2) G-P(sol) polarization free energy of solvation -67.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds