Wall clock time and date at job start Wed Apr 1 2020 04:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42900 * 109.47116 * 2 1 4 4 C 1.53003 * 109.46765 * 240.00242 * 2 1 3 5 5 N 1.46906 * 109.46804 * 60.00096 * 4 2 1 6 6 C 1.46898 * 110.99762 * 178.13842 * 5 4 2 7 7 C 1.50704 * 110.01642 * 302.26727 * 6 5 4 8 8 H 1.08004 * 120.00214 * 122.75241 * 7 6 5 9 9 C 1.37875 * 119.99983 * 302.74535 * 7 6 5 10 10 N 1.31521 * 119.99731 * 354.00132 * 9 7 6 11 11 Si 1.86801 * 120.00435 * 173.99621 * 9 7 6 12 12 H 1.48502 * 109.46839 * 60.00084 * 11 9 7 13 13 H 1.48497 * 109.47273 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.46938 * 300.00562 * 11 9 7 15 15 C 1.54260 * 110.03316 * 180.87469 * 6 5 4 16 16 C 1.54965 * 104.16165 * 217.13699 * 15 6 5 17 17 C 1.54885 * 102.77869 * 37.88362 * 16 15 6 18 18 C 1.53879 * 110.03314 * 63.65282 * 6 5 4 19 19 C 1.50696 * 109.47136 * 120.00641 * 2 1 3 20 20 O 1.20825 * 120.00351 * 95.00338 * 19 2 1 21 21 O 1.34233 * 120.00129 * 274.99369 * 19 2 1 22 22 C 1.45187 * 117.00259 * 180.02562 * 21 19 2 23 23 C 1.50707 * 109.47321 * 180.02562 * 22 21 19 24 24 C 1.38237 * 119.99872 * 269.72901 * 23 22 21 25 25 C 1.38228 * 119.99932 * 179.76474 * 24 23 22 26 26 C 1.38235 * 120.00097 * 0.50698 * 25 24 23 27 27 C 1.38237 * 119.99823 * 359.74496 * 26 25 24 28 28 C 1.38230 * 120.00281 * 359.97438 * 27 26 25 29 29 H 1.09005 * 109.46454 * 299.99414 * 1 2 3 30 30 H 1.09000 * 109.47061 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47246 * 59.99646 * 1 2 3 32 32 H 0.96698 * 113.99670 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46998 * 179.97438 * 4 2 1 34 34 H 1.08991 * 109.47277 * 300.00249 * 4 2 1 35 35 H 1.00895 * 110.99849 * 54.18582 * 5 4 2 36 36 H 0.96999 * 119.99786 * 179.97438 * 10 9 7 37 37 H 1.08997 * 110.48444 * 335.78178 * 15 6 5 38 38 H 1.08995 * 110.49169 * 98.43005 * 15 6 5 39 39 H 1.09003 * 110.72049 * 279.57381 * 16 15 6 40 40 H 1.08997 * 110.76875 * 156.21868 * 16 15 6 41 41 H 1.09001 * 110.49131 * 203.40604 * 17 16 15 42 42 H 1.09004 * 110.48412 * 80.76263 * 17 16 15 43 43 H 1.08996 * 110.03221 * 238.56739 * 18 6 5 44 44 H 1.08998 * 110.03202 * 0.02562 * 18 6 5 45 45 H 1.09008 * 109.47315 * 299.99720 * 22 21 19 46 46 H 1.09000 * 109.47852 * 60.00288 * 22 21 19 47 47 H 1.08001 * 119.99946 * 359.97438 * 24 23 22 48 48 H 1.08001 * 119.99988 * 180.22418 * 25 24 23 49 49 H 1.08003 * 120.00298 * 179.72505 * 26 25 24 50 50 H 1.07996 * 119.99966 * 179.97438 * 27 26 25 51 51 H 1.07998 * 120.00406 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 1.5502 -0.0286 -2.4487 6 6 2.0572 -0.6684 -3.6700 7 6 3.5640 -0.6845 -3.6565 8 1 4.0949 -1.6214 -3.7395 9 6 4.2650 0.4969 -3.5384 10 7 3.6251 1.6458 -3.5562 11 14 6.1235 0.4658 -3.3529 12 1 6.7283 -0.1932 -4.5384 13 1 6.6336 1.8562 -3.2449 14 1 6.4861 -0.2907 -2.1275 15 6 1.5478 0.0887 -4.9137 16 6 1.2738 -1.0286 -5.9519 17 6 0.6952 -2.1712 -5.0809 18 6 1.5157 -2.1049 -3.7762 19 6 2.0324 -0.7105 1.2303 20 8 2.3198 -1.8828 1.1760 21 8 2.1607 -0.0410 2.3867 22 6 2.6508 -0.7889 3.5305 23 6 2.7278 0.1205 4.7298 24 6 3.8893 0.8232 4.9909 25 6 3.9583 1.6611 6.0881 26 6 2.8695 1.7882 6.9303 27 6 1.7098 1.0815 6.6721 28 6 1.6387 0.2481 5.5716 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8899 32 1 2.9703 1.4236 0.0004 33 1 3.1300 -0.7209 -1.2496 34 1 1.6766 -1.7488 -1.2494 35 1 1.7936 0.9503 -2.4256 36 1 4.1182 2.4769 -3.4727 37 1 0.6292 0.6279 -4.6824 38 1 2.3111 0.7740 -5.2823 39 1 2.1994 -1.3418 -6.4348 40 1 0.5437 -0.6988 -6.6910 41 1 0.8363 -3.1341 -5.5718 42 1 -0.3613 -1.9974 -4.8763 43 1 2.3429 -2.8135 -3.8189 44 1 0.8765 -2.3271 -2.9217 45 1 1.9708 -1.6138 3.7437 46 1 3.6424 -1.1834 3.3091 47 1 4.7416 0.7202 4.3356 48 1 4.8645 2.2129 6.2901 49 1 2.9249 2.4395 7.7901 50 1 0.8593 1.1806 7.3303 51 1 0.7329 -0.3043 5.3702 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253664861.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:18 Heat of formation + Delta-G solvation = -116.119557 kcal Electronic energy + Delta-G solvation = -31574.564232 eV Core-core repulsion = 27438.389379 eV Total energy + Delta-G solvation = -4136.174853 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.60799 -39.36852 -38.01813 -36.85180 -36.23552 -33.23491 -32.33069 -32.13888 -31.15433 -30.39827 -27.51399 -27.05325 -26.80064 -25.12827 -23.93878 -22.83659 -22.59751 -21.43501 -20.09046 -19.41524 -18.48526 -17.89927 -17.33148 -16.58491 -16.45252 -16.28699 -15.50553 -15.25469 -15.09693 -14.79622 -14.32579 -14.17603 -13.91233 -13.65904 -13.51676 -13.26380 -12.99062 -12.90325 -12.68262 -12.51607 -12.30575 -12.08383 -11.88019 -11.54500 -11.41350 -11.34277 -11.32782 -11.18080 -10.92803 -10.61774 -10.60414 -10.51953 -10.35217 -10.12435 -10.01814 -9.78999 -9.54519 -9.40243 -9.31120 -9.20041 -9.16302 -9.01439 -8.40569 -7.02668 -6.02252 -4.17594 0.95327 1.16199 2.33850 2.78282 3.22379 3.28671 3.32537 3.63516 4.33687 4.43100 4.50233 4.56011 4.73993 4.86567 4.93618 5.00443 5.13606 5.22681 5.28207 5.35222 5.38492 5.40662 5.69880 5.77995 5.78705 5.85283 5.89758 6.02864 6.10653 6.17428 6.20362 6.24860 6.33035 6.44979 6.52363 6.53853 6.61840 6.63777 6.72262 6.81844 6.82706 6.89737 6.96927 7.03078 7.20279 7.39985 7.52747 7.72210 7.76800 7.87146 8.05958 8.22278 8.68716 8.87816 9.12832 9.51030 10.92210 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.014230 B = 0.002861 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.160896 B = 9785.221457 C =10875.428334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.152 3.848 3 O -0.532 6.532 4 C 0.059 3.941 5 N -0.673 5.673 6 C 0.234 3.766 7 C -0.531 4.531 8 H 0.051 0.949 9 C 0.069 3.931 10 N -0.883 5.883 11 Si 0.881 3.119 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.280 1.280 15 C -0.092 4.092 16 C -0.120 4.120 17 C -0.118 4.118 18 C -0.111 4.111 19 C 0.438 3.562 20 O -0.501 6.501 21 O -0.341 6.341 22 C 0.101 3.899 23 C -0.092 4.092 24 C -0.095 4.095 25 C -0.123 4.123 26 C -0.113 4.113 27 C -0.124 4.124 28 C -0.096 4.096 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.380 0.620 33 H 0.044 0.956 34 H 0.072 0.928 35 H 0.361 0.639 36 H 0.264 0.736 37 H 0.040 0.960 38 H 0.078 0.922 39 H 0.057 0.943 40 H 0.043 0.957 41 H 0.043 0.957 42 H 0.052 0.948 43 H 0.049 0.951 44 H 0.050 0.950 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.125 0.875 48 H 0.125 0.875 49 H 0.123 0.877 50 H 0.124 0.876 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.861 -0.469 15.756 16.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.109 3.891 3 O -0.337 6.337 4 C -0.071 4.071 5 N -0.308 5.308 6 C 0.145 3.855 7 C -0.571 4.571 8 H 0.070 0.930 9 C -0.133 4.133 10 N -0.521 5.521 11 Si 0.709 3.291 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.205 1.205 15 C -0.130 4.130 16 C -0.158 4.158 17 C -0.156 4.156 18 C -0.149 4.149 19 C 0.279 3.721 20 O -0.388 6.388 21 O -0.258 6.258 22 C 0.028 3.972 23 C -0.092 4.092 24 C -0.113 4.113 25 C -0.141 4.141 26 C -0.131 4.131 27 C -0.142 4.142 28 C -0.114 4.114 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.227 0.773 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.184 0.816 36 H 0.074 0.926 37 H 0.058 0.942 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.143 0.857 48 H 0.143 0.857 49 H 0.141 0.859 50 H 0.142 0.858 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.971 -0.822 15.775 16.560 hybrid contribution 2.894 -0.048 0.280 2.907 sum -2.077 -0.869 16.055 16.212 Atomic orbital electron populations 1.21627 0.89875 1.02700 1.04048 1.21409 0.96993 0.82821 0.87904 1.86571 1.27104 1.23672 1.96321 1.22108 0.98757 0.97555 0.88717 1.61149 1.60459 1.09107 1.00088 1.19028 0.91333 0.88484 0.86653 1.21811 0.92137 0.92800 1.50342 0.93029 1.24953 0.97793 0.95618 0.94955 1.69768 1.35436 0.97158 1.49776 0.86829 0.86523 0.76958 0.78780 1.20296 1.21215 1.20535 1.22221 0.99334 0.96498 0.94952 1.22433 0.98971 0.96996 0.97448 1.22268 0.98773 0.97452 0.97093 1.22291 0.97810 0.99102 0.95704 1.25430 0.74489 0.86942 0.85242 1.90651 1.45478 1.17477 1.85160 1.86708 1.76898 1.43838 1.18358 1.21796 1.00560 0.92674 0.82192 1.19547 0.94789 0.99382 0.95486 1.21131 0.97631 0.95381 0.97147 1.21164 0.98950 0.98867 0.95132 1.21226 0.93413 0.99057 0.99398 1.21149 0.98198 0.97183 0.97682 1.21098 0.97627 0.98183 0.94452 0.92496 0.91254 0.88456 0.77256 0.93784 0.90977 0.81618 0.92595 0.94170 0.90387 0.92419 0.93859 0.93804 0.92948 0.93272 0.93160 0.90454 0.90421 0.85726 0.85746 0.85927 0.85777 0.85789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 8.67 37.16 0.32 -1.68 16 2 C 0.15 2.71 1.12 -91.77 -0.10 2.61 16 3 O -0.53 -9.68 12.07 -49.11 -0.59 -10.27 16 4 C 0.06 1.22 3.77 -3.82 -0.01 1.21 16 5 N -0.67 -14.71 5.19 -99.99 -0.52 -15.23 16 6 C 0.23 5.37 0.51 -131.63 -0.07 5.31 16 7 C -0.53 -13.50 6.53 -34.44 -0.22 -13.73 16 8 H 0.05 1.36 7.33 -52.48 -0.38 0.98 16 9 C 0.07 1.75 5.02 -17.82 -0.09 1.66 16 10 N -0.88 -22.46 10.16 55.43 0.56 -21.89 16 11 Si 0.88 20.28 29.54 -169.99 -5.02 15.26 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 15 C -0.09 -2.07 5.56 -25.03 -0.14 -2.21 16 16 C -0.12 -2.36 6.91 -24.70 -0.17 -2.53 16 17 C -0.12 -2.19 6.83 -25.07 -0.17 -2.36 16 18 C -0.11 -2.32 5.62 -25.61 -0.14 -2.47 16 19 C 0.44 7.64 6.80 36.00 0.24 7.89 16 20 O -0.50 -9.68 15.84 -18.75 -0.30 -9.98 16 21 O -0.34 -5.37 9.96 -44.43 -0.44 -5.82 16 22 C 0.10 1.32 5.59 36.01 0.20 1.52 16 23 C -0.09 -1.07 5.52 -104.62 -0.58 -1.65 16 24 C -0.09 -1.03 9.70 -39.59 -0.38 -1.41 16 25 C -0.12 -1.15 10.05 -39.59 -0.40 -1.54 16 26 C -0.11 -0.97 10.05 -39.58 -0.40 -1.37 16 27 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 28 C -0.10 -0.99 9.70 -39.58 -0.38 -1.37 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.10 1.63 7.60 -51.93 -0.39 1.24 16 32 H 0.38 6.40 9.04 45.56 0.41 6.82 16 33 H 0.04 1.03 6.95 -51.93 -0.36 0.67 16 34 H 0.07 1.52 6.33 -51.93 -0.33 1.19 16 35 H 0.36 8.57 6.22 -39.29 -0.24 8.33 16 36 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 37 H 0.04 0.90 8.05 -51.93 -0.42 0.48 16 38 H 0.08 1.96 6.45 -51.93 -0.34 1.63 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.05 1.06 7.37 -51.93 -0.38 0.68 16 44 H 0.05 1.02 6.63 -51.93 -0.34 0.68 16 45 H 0.08 0.93 8.08 -51.92 -0.42 0.51 16 46 H 0.08 0.99 8.08 -51.93 -0.42 0.57 16 47 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 48 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 49 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 50 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 51 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 407.67 15.07 6.14 6.14 Total: -1.00 -27.71 407.67 -10.47 -38.17 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: -7.41 Total: 17.25 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: -2.89 Total: -13.63 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.04 Total: -37.13 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -1.33 Total: -26.07 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -27.71 -10.47 -38.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253664861.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.945 kcal (2) G-P(sol) polarization free energy of solvation -27.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds