Wall clock time and date at job start Wed Apr 1 2020 05:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00272 * 2 1 4 4 H 1.48494 * 109.47099 * 269.99367 * 3 2 1 5 5 H 1.48499 * 109.47000 * 29.99879 * 3 2 1 6 6 H 1.48499 * 109.47003 * 149.99313 * 3 2 1 7 7 C 1.38817 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00252 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99782 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99892 * 174.07615 * 9 7 2 11 11 C 1.52997 * 109.54812 * 300.69664 * 10 9 7 12 12 N 1.46506 * 109.46973 * 305.05822 * 11 10 9 13 13 C 1.34773 * 120.00130 * 175.89919 * 12 11 10 14 14 O 1.21701 * 119.99968 * 359.97438 * 13 12 11 15 15 C 1.46677 * 120.00237 * 179.97438 * 13 12 11 16 16 C 1.38052 * 126.20953 * 179.97438 * 15 13 12 17 17 C 1.39237 * 106.97823 * 179.97438 * 16 15 13 18 18 C 1.35972 * 108.04204 * 0.04046 * 17 16 15 19 19 N 1.35110 * 108.76306 * 0.15681 * 18 17 16 20 20 H 0.96998 * 125.68828 * 180.02562 * 19 18 17 21 21 C 1.51022 * 123.85037 * 179.89484 * 18 17 16 22 22 C 1.53314 * 108.41775 * 343.30480 * 21 18 17 23 23 C 1.53107 * 109.53945 * 50.15690 * 22 21 18 24 24 C 1.50845 * 127.70585 * 180.02562 * 17 16 15 25 25 C 1.53178 * 109.54324 * 60.87372 * 10 9 7 26 26 C 1.53108 * 109.15934 * 63.06166 * 25 10 9 27 27 O 1.42903 * 109.48080 * 57.47574 * 26 25 10 28 28 C 1.42905 * 114.10108 * 298.88598 * 27 26 25 29 29 C 1.53093 * 109.40967 * 61.16358 * 28 27 26 30 30 H 0.97000 * 119.99755 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99855 * 354.08294 * 9 7 2 32 32 H 1.08992 * 109.47756 * 185.05917 * 11 10 9 33 33 H 1.09007 * 109.47316 * 65.05260 * 11 10 9 34 34 H 0.97004 * 119.99677 * 355.89925 * 12 11 10 35 35 H 1.08000 * 126.50616 * 359.93484 * 16 15 13 36 36 H 1.09005 * 109.67311 * 103.03299 * 21 18 17 37 37 H 1.08995 * 109.67564 * 223.57028 * 21 18 17 38 38 H 1.09001 * 109.46110 * 290.14243 * 22 21 18 39 39 H 1.08998 * 109.45037 * 170.17328 * 22 21 18 40 40 H 1.08995 * 109.48059 * 169.61498 * 23 22 21 41 41 H 1.09007 * 109.47348 * 49.60409 * 23 22 21 42 42 H 1.08996 * 109.68269 * 283.15632 * 24 17 16 43 43 H 1.08999 * 109.67996 * 43.71472 * 24 17 16 44 44 H 1.09000 * 109.52394 * 182.88126 * 25 10 9 45 45 H 1.09006 * 109.52275 * 303.06581 * 25 10 9 46 46 H 1.08998 * 109.40120 * 297.49317 * 26 25 10 47 47 H 1.08998 * 109.49191 * 177.50988 * 26 25 10 48 48 H 1.08997 * 109.47760 * 301.18387 * 28 27 26 49 49 H 1.08994 * 109.49039 * 181.15061 * 28 27 26 50 50 H 1.08999 * 109.51957 * 182.48446 * 29 28 27 51 51 H 1.09001 * 109.57382 * 62.32925 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0521 -3.6535 -0.1298 11 6 2.8314 -3.6630 -1.4464 12 7 1.9149 -3.3982 -2.5583 13 6 2.3939 -3.2766 -3.8122 14 8 3.5879 -3.3863 -4.0207 15 6 1.4763 -3.0121 -4.9254 16 6 1.8257 -2.8645 -6.2528 17 6 0.6492 -2.6283 -6.9591 18 6 -0.3822 -2.6335 -6.0730 19 7 0.1093 -2.8616 -4.8354 20 1 -0.4133 -2.9155 -4.0200 21 6 -1.8247 -2.4091 -6.4599 22 6 -1.8592 -1.7809 -7.8579 23 6 -0.9826 -2.6000 -8.8092 24 6 0.4933 -2.4007 -8.4421 25 6 3.0253 -3.8086 1.0428 26 6 2.2305 -3.8794 2.3495 27 8 1.3039 -4.9654 2.2854 28 6 0.3396 -4.8486 1.2372 29 6 1.0583 -4.8190 -0.1142 30 1 -0.4850 0.8401 -0.0004 31 1 0.3593 -2.3903 0.0868 32 1 3.2987 -4.6378 -1.5851 33 1 3.6012 -2.8916 -1.4186 34 1 0.9632 -3.3105 -2.3920 35 1 2.8223 -2.9209 -6.6650 36 1 -2.3537 -3.3621 -6.4726 37 1 -2.2963 -1.7365 -5.7435 38 1 -1.4826 -0.7593 -7.8064 39 1 -2.8849 -1.7717 -8.2265 40 1 -1.1499 -2.2685 -9.8339 41 1 -1.2400 -3.6557 -8.7222 42 1 0.8002 -1.3851 -8.6919 43 1 1.1074 -3.1155 -8.9897 44 1 3.6021 -4.7252 0.9186 45 1 3.7005 -2.9534 1.0714 46 1 1.6870 -2.9457 2.4937 47 1 2.9149 -4.0342 3.1835 48 1 -0.2286 -3.9276 1.3670 49 1 -0.3381 -5.7016 1.2699 50 1 0.3280 -4.6857 -0.9123 51 1 1.5940 -5.7565 -0.2636 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325025311.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:14 Heat of formation + Delta-G solvation = -66.093791 kcal Electronic energy + Delta-G solvation = -31823.404483 eV Core-core repulsion = 27721.691661 eV Total energy + Delta-G solvation = -4101.712822 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.57748 -41.01072 -39.92653 -37.35783 -37.13476 -35.20152 -33.93943 -33.09365 -32.02407 -31.00966 -30.37734 -29.77155 -28.12108 -26.01175 -25.09184 -24.42251 -23.57642 -22.99714 -22.15447 -21.07746 -20.21943 -19.46323 -19.38524 -19.06298 -17.25526 -17.07748 -16.96612 -16.71373 -16.41296 -16.21738 -15.99638 -15.71518 -15.38505 -15.36341 -14.84848 -14.71613 -14.66123 -14.49754 -14.19554 -13.98765 -13.74923 -13.63686 -13.48267 -13.25220 -13.21746 -12.97448 -12.90657 -12.73281 -12.64674 -12.27789 -12.13639 -11.76587 -11.65970 -11.55967 -11.54651 -11.33751 -11.24388 -11.17496 -10.95037 -10.36985 -10.10243 -9.78420 -9.02606 -8.88830 -7.96775 -5.22146 0.44837 1.39331 1.43893 1.47394 1.68516 2.04998 2.22301 2.40764 2.51676 3.04397 3.37092 3.69937 3.75874 3.81234 3.87078 3.96638 3.99073 4.08993 4.10000 4.19567 4.20362 4.40247 4.43355 4.52776 4.57730 4.68041 4.69021 4.71831 4.73490 4.76084 4.79662 4.85408 4.97639 4.98740 5.05251 5.09720 5.13634 5.16756 5.23181 5.23976 5.29994 5.32950 5.38644 5.46844 5.54083 5.58177 5.86679 5.95930 6.25665 6.33637 6.43224 6.59476 7.16046 7.35824 8.02930 8.30606 9.25035 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010284 B = 0.003380 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2722.030431 B = 8283.101240 C = 9321.431123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.055 4.055 3 Si 0.943 3.057 4 H -0.302 1.302 5 H -0.296 1.296 6 H -0.276 1.276 7 C -0.214 4.214 8 H 0.063 0.937 9 N -0.711 5.711 10 C 0.188 3.812 11 C 0.126 3.874 12 N -0.693 5.693 13 C 0.581 3.419 14 O -0.585 6.585 15 C -0.078 4.078 16 C -0.117 4.117 17 C -0.191 4.191 18 C 0.057 3.943 19 N -0.521 5.521 20 H 0.422 0.578 21 C -0.054 4.054 22 C -0.112 4.112 23 C -0.114 4.114 24 C -0.047 4.047 25 C -0.152 4.152 26 C 0.076 3.924 27 O -0.396 6.396 28 C 0.065 3.935 29 C -0.144 4.144 30 H 0.248 0.752 31 H 0.378 0.622 32 H 0.068 0.932 33 H 0.038 0.962 34 H 0.401 0.599 35 H 0.138 0.862 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.058 0.942 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.060 0.940 46 H 0.037 0.963 47 H 0.101 0.899 48 H 0.039 0.961 49 H 0.113 0.887 50 H 0.078 0.922 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.376 -10.113 -11.632 16.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.249 4.249 3 Si 0.775 3.225 4 H -0.231 1.231 5 H -0.223 1.223 6 H -0.201 1.201 7 C -0.346 4.346 8 H 0.081 0.919 9 N -0.352 5.352 10 C 0.097 3.903 11 C 0.000 4.000 12 N -0.341 5.341 13 C 0.370 3.630 14 O -0.467 6.467 15 C -0.191 4.191 16 C -0.144 4.144 17 C -0.196 4.196 18 C -0.062 4.062 19 N -0.116 5.116 20 H 0.261 0.739 21 C -0.092 4.092 22 C -0.150 4.150 23 C -0.152 4.152 24 C -0.084 4.084 25 C -0.192 4.192 26 C -0.001 4.001 27 O -0.315 6.315 28 C -0.011 4.011 29 C -0.182 4.182 30 H 0.057 0.943 31 H 0.212 0.788 32 H 0.086 0.914 33 H 0.056 0.944 34 H 0.237 0.763 35 H 0.156 0.844 36 H 0.117 0.883 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.112 0.888 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.098 0.902 45 H 0.078 0.922 46 H 0.055 0.945 47 H 0.119 0.881 48 H 0.057 0.943 49 H 0.131 0.869 50 H 0.096 0.904 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.443 -10.237 -11.417 16.272 hybrid contribution 0.062 1.806 0.661 1.924 sum -5.381 -8.431 -10.755 14.688 Atomic orbital electron populations 1.69716 1.05638 1.25442 1.59794 1.25110 0.96002 0.99453 1.04304 0.85595 0.78232 0.82012 0.76649 1.23060 1.22250 1.20110 1.19181 0.90799 0.84822 1.39817 0.91884 1.42467 1.05812 0.99899 1.87038 1.20028 0.92214 0.86740 0.91327 1.21731 0.92278 0.99383 0.86636 1.45515 1.11524 1.71217 1.05869 1.17354 0.86961 0.76319 0.82381 1.90749 1.16634 1.54386 1.84917 1.20259 0.83267 1.20071 0.95497 1.21129 0.99289 1.03219 0.90810 1.19603 0.91168 1.11607 0.97250 1.21104 0.97767 1.04102 0.83244 1.41756 1.05989 1.54338 1.09560 0.73884 1.20504 0.87230 1.02807 0.98666 1.21550 1.01465 0.99116 0.92828 1.21592 0.93120 1.00707 0.99733 1.20141 0.98080 1.01615 0.88589 1.22453 0.98739 1.01889 0.96157 1.22372 0.91298 0.89243 0.97182 1.87811 1.44894 1.45820 1.52970 1.22578 0.90573 1.02061 0.85928 1.22321 0.99047 0.98079 0.98706 0.94305 0.78814 0.91386 0.94368 0.76349 0.84407 0.88329 0.90012 0.92292 0.88799 0.89734 0.91417 0.91313 0.90691 0.90245 0.92151 0.94493 0.88133 0.94309 0.86863 0.90367 0.89196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -53.14 13.07 21.65 0.28 -52.86 16 2 C -0.06 -2.96 5.50 84.86 0.47 -2.49 16 3 Si 0.94 45.49 29.55 68.60 2.03 47.52 16 4 H -0.30 -15.06 7.11 99.48 0.71 -14.35 16 5 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 6 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 7 C -0.21 -10.68 8.70 84.03 0.73 -9.95 16 8 H 0.06 3.22 6.75 -2.91 -0.02 3.20 16 9 N -0.71 -29.88 3.77 -302.81 -1.14 -31.02 16 10 C 0.19 6.35 0.41 3.72 0.00 6.35 16 11 C 0.13 4.53 4.32 86.38 0.37 4.91 16 12 N -0.69 -24.52 5.16 -467.07 -2.41 -26.93 16 13 C 0.58 22.66 7.79 86.45 0.67 23.33 16 14 O -0.59 -26.67 16.88 -4.35 -0.07 -26.74 16 15 C -0.08 -2.66 7.06 40.36 0.29 -2.38 16 16 C -0.12 -3.78 10.62 22.47 0.24 -3.55 16 17 C -0.19 -4.99 5.91 -20.10 -0.12 -5.11 16 18 C 0.06 1.39 7.02 41.63 0.29 1.69 16 19 N -0.52 -14.31 5.98 -171.29 -1.02 -15.34 16 20 H 0.42 10.19 8.19 -92.71 -0.76 9.43 16 21 C -0.05 -0.89 6.30 30.06 0.19 -0.70 16 22 C -0.11 -1.52 5.89 30.74 0.18 -1.34 16 23 C -0.11 -1.56 5.91 30.76 0.18 -1.38 16 24 C -0.05 -0.89 6.28 30.02 0.19 -0.70 16 25 C -0.15 -4.96 4.83 30.69 0.15 -4.81 16 26 C 0.08 2.44 6.68 72.02 0.48 2.92 16 27 O -0.40 -12.39 10.77 -148.98 -1.60 -13.99 16 28 C 0.07 1.82 6.67 72.01 0.48 2.30 16 29 C -0.14 -3.90 4.80 30.68 0.15 -3.75 16 30 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 31 H 0.38 16.94 6.72 -92.71 -0.62 16.32 16 32 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.04 1.63 7.55 -2.38 -0.02 1.61 16 34 H 0.40 13.11 6.43 -92.71 -0.60 12.51 16 35 H 0.14 4.44 8.06 -2.91 -0.02 4.41 16 36 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.06 0.93 8.11 -2.39 -0.02 0.91 16 39 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.07 0.90 8.11 -2.38 -0.02 0.88 16 42 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.06 2.17 7.12 -2.38 -0.02 2.15 16 46 H 0.04 1.41 7.75 -2.39 -0.02 1.39 16 47 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 48 H 0.04 1.25 7.09 -2.39 -0.02 1.23 16 49 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 50 H 0.08 1.96 7.21 -2.39 -0.02 1.94 16 51 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -66.57 398.14 -0.01 -66.59 By element: Atomic # 1 Polarization: 48.46 SS G_CDS: -1.01 Total: 47.45 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 4.94 Total: 5.34 kcal Atomic # 7 Polarization: -121.86 SS G_CDS: -4.29 Total: -126.16 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: -1.68 Total: -40.73 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -66.57 -0.01 -66.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325025311.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.491 kcal (2) G-P(sol) polarization free energy of solvation -66.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds