Wall clock time and date at job start Wed Apr 1 2020 04:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.51019 * 2 1 4 4 C 1.53098 * 109.50830 * 120.09019 * 2 1 3 5 5 N 1.47021 * 109.25505 * 176.82549 * 4 2 1 6 6 C 1.38538 * 110.99474 * 177.60619 * 5 4 2 7 7 N 1.31248 * 126.38197 * 0.02906 * 6 5 4 8 8 N 1.28505 * 110.10068 * 179.97438 * 7 6 5 9 9 C 1.31227 * 109.95790 * 359.97438 * 8 7 6 10 10 C 1.47942 * 126.47612 * 179.97438 * 9 8 7 11 11 C 1.36712 * 126.93667 * 0.02562 * 10 9 8 12 12 N 1.35202 * 106.02143 * 180.02562 * 11 10 9 13 13 C 1.46496 * 125.73148 * 180.02562 * 12 11 10 14 14 C 1.52998 * 109.47238 * 124.99782 * 13 12 11 15 15 C 1.50706 * 109.47348 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99302 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00436 * 179.72505 * 15 14 13 18 18 N 1.31515 * 119.99684 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00405 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47050 * 59.99579 * 19 17 15 21 21 H 1.48496 * 109.47289 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46492 * 299.99554 * 19 17 15 23 23 N 1.28644 * 108.53461 * 0.25756 * 12 11 10 24 24 N 1.28601 * 110.54662 * 359.56472 * 23 12 11 25 25 N 1.36603 * 126.37878 * 180.28810 * 6 5 4 26 26 C 1.46498 * 127.17085 * 0.02562 * 25 6 5 27 27 C 1.47011 * 110.75310 * 301.38103 * 5 4 2 28 28 C 1.53095 * 109.25530 * 58.62105 * 27 5 4 29 29 O 1.43012 * 109.26114 * 303.14793 * 28 27 5 30 30 H 1.09002 * 109.46929 * 299.90812 * 1 2 3 31 31 H 1.08997 * 109.47234 * 59.91259 * 1 2 3 32 32 H 1.09006 * 109.47247 * 179.91003 * 1 2 3 33 33 H 1.08996 * 109.50787 * 56.89363 * 4 2 1 34 34 H 1.08994 * 109.54311 * 296.78411 * 4 2 1 35 35 H 1.08003 * 126.98721 * 0.02562 * 11 10 9 36 36 H 1.09000 * 109.47435 * 4.99686 * 13 12 11 37 37 H 1.09002 * 109.46784 * 244.99321 * 13 12 11 38 38 H 1.09001 * 109.47671 * 59.99927 * 14 13 12 39 39 H 1.08998 * 109.47454 * 299.99925 * 14 13 12 40 40 H 0.97004 * 120.00247 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.47423 * 270.18479 * 26 25 6 42 42 H 1.09002 * 109.47970 * 30.18624 * 26 25 6 43 43 H 1.09003 * 109.47181 * 150.18523 * 26 25 6 44 44 H 1.09006 * 109.50346 * 178.54890 * 27 5 4 45 45 H 1.08996 * 109.50785 * 298.68426 * 27 5 4 46 46 H 1.09005 * 109.50544 * 183.20956 * 28 27 5 47 47 H 1.09006 * 109.54484 * 63.10502 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7235 1.2486 5 7 3.5094 -0.7871 1.2051 6 6 4.0142 -1.3888 2.3463 7 7 3.3154 -1.8545 3.3550 8 7 4.0999 -2.3472 4.2456 9 6 5.3481 -2.2264 3.8593 10 6 6.5464 -2.6700 4.6050 11 6 6.5735 -3.2840 5.8261 12 7 7.8784 -3.4997 6.1064 13 6 8.3990 -4.1379 7.3179 14 6 9.2919 -5.3180 6.9293 15 6 9.8280 -5.9742 8.1756 16 1 9.5590 -5.5878 9.1476 17 6 10.6575 -7.0709 8.0751 18 7 10.9806 -7.5446 6.8915 19 14 11.3214 -7.8847 9.6199 20 1 10.1892 -8.3663 10.4513 21 1 12.1823 -9.0344 9.2429 22 1 12.1202 -6.9004 10.3935 23 7 8.5863 -3.0460 5.1328 24 7 7.8305 -2.5499 4.2182 25 7 5.3323 -1.6034 2.6337 26 6 6.4879 -1.2474 1.8066 27 6 3.9648 -1.4869 -0.0049 28 6 3.4343 -0.7557 -1.2409 29 8 2.0084 -0.6760 -1.1660 30 1 -0.3633 0.5124 0.8908 31 1 -0.3633 0.5152 -0.8892 32 1 -0.3634 -1.0277 -0.0016 33 1 1.6338 -1.7341 1.2761 34 1 1.7267 -0.1799 2.1394 35 1 5.7250 -3.5440 6.4417 36 1 7.5681 -4.4958 7.9259 37 1 8.9813 -3.4142 7.8883 38 1 10.1229 -4.9603 6.3214 39 1 8.7097 -6.0418 6.3589 40 1 11.5639 -8.3164 6.8207 41 1 6.7241 -2.0743 1.1369 42 1 6.2546 -0.3594 1.2190 43 1 7.3451 -1.0434 2.4483 44 1 5.0546 -1.4998 -0.0295 45 1 3.5881 -2.5097 0.0026 46 1 3.7216 -1.3029 -2.1388 47 1 3.8536 0.2498 -1.2777 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340036002.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:10 Heat of formation + Delta-G solvation = 144.391873 kcal Electronic energy + Delta-G solvation = -29832.699511 eV Core-core repulsion = 25668.866440 eV Total energy + Delta-G solvation = -4163.833071 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.23108 -42.80913 -40.15273 -36.48063 -35.47761 -34.89004 -33.28695 -32.98759 -31.97598 -30.17375 -29.82849 -28.35094 -27.68576 -26.32946 -25.68197 -24.06189 -23.25123 -22.65192 -21.58317 -21.27783 -20.57098 -20.17548 -17.84974 -17.30304 -16.93466 -16.70872 -16.44127 -16.21065 -15.93863 -15.76504 -15.62436 -15.06452 -14.86465 -14.68930 -14.59648 -14.11897 -13.61804 -13.46604 -13.26372 -13.03967 -12.73979 -12.52824 -12.38897 -12.05114 -11.89639 -11.79213 -11.66271 -11.53020 -11.30078 -11.15568 -11.00103 -10.95690 -10.83001 -10.58789 -10.35502 -10.32259 -10.15730 -10.03302 -9.54065 -9.49088 -9.33700 -8.57655 -8.19498 -6.21903 -4.29119 1.17160 1.87370 1.98338 2.33015 2.71221 3.13047 3.20538 3.21846 3.27474 3.27810 3.28906 3.85890 4.15899 4.28855 4.31068 4.37074 4.51632 4.58397 4.64886 4.73297 4.82141 4.95268 4.97353 5.04736 5.07940 5.10966 5.14697 5.17361 5.24084 5.27626 5.34902 5.37651 5.54029 5.57020 5.73094 5.75731 5.79436 5.90807 5.99117 6.11414 6.21142 6.33543 6.66480 6.76964 6.85815 7.32021 7.40630 7.71683 8.03311 8.55768 8.66307 8.75667 9.36942 10.88999 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.030257 B = 0.001768 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.186901 B =15831.904326 C =16120.194404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.089 3.911 3 H 0.071 0.929 4 C 0.041 3.959 5 N -0.448 5.448 6 C 0.353 3.647 7 N -0.312 5.312 8 N -0.266 5.266 9 C 0.282 3.718 10 C 0.021 3.979 11 C 0.006 3.994 12 N -0.265 5.265 13 C 0.109 3.891 14 C 0.014 3.986 15 C -0.534 4.534 16 H 0.061 0.939 17 C 0.064 3.936 18 N -0.886 5.886 19 Si 0.901 3.099 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.274 1.274 23 N -0.057 5.057 24 N -0.273 5.273 25 N -0.469 5.469 26 C 0.074 3.926 27 C 0.009 3.991 28 C 0.069 3.931 29 O -0.379 6.379 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.102 0.898 35 H 0.199 0.801 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.038 0.962 39 H 0.025 0.975 40 H 0.266 0.734 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.110 0.890 44 H 0.094 0.906 45 H 0.060 0.940 46 H 0.107 0.893 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.723 16.019 -14.861 27.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.031 3.969 3 H 0.089 0.911 4 C -0.086 4.086 5 N -0.172 5.172 6 C -0.003 4.003 7 N -0.158 5.158 8 N -0.108 5.108 9 C 0.014 3.986 10 C -0.118 4.118 11 C -0.150 4.150 12 N -0.056 5.056 13 C -0.009 4.009 14 C -0.023 4.023 15 C -0.573 4.573 16 H 0.080 0.920 17 C -0.140 4.140 18 N -0.524 5.524 19 Si 0.728 3.272 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.200 1.200 23 N -0.037 5.037 24 N -0.141 5.141 25 N -0.163 5.163 26 C -0.069 4.069 27 C -0.118 4.118 28 C -0.008 4.008 29 O -0.298 6.298 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.120 0.880 35 H 0.216 0.784 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.056 0.944 39 H 0.043 0.957 40 H 0.075 0.925 41 H 0.099 0.901 42 H 0.108 0.892 43 H 0.128 0.872 44 H 0.112 0.888 45 H 0.078 0.922 46 H 0.125 0.875 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.273 16.126 -14.831 27.291 hybrid contribution 0.586 -1.050 0.739 1.411 sum -15.687 15.076 -14.092 25.922 Atomic orbital electron populations 1.21743 0.91966 1.03456 1.03024 1.22262 0.95536 0.95587 0.83555 0.91148 1.22837 0.82882 1.02523 1.00390 1.58855 1.12218 1.47769 0.98343 1.22398 0.81474 1.00095 0.96370 1.74553 1.24741 1.15878 1.00660 1.74310 0.96925 1.18277 1.21309 1.20950 0.93014 1.00037 0.84552 1.18344 0.89789 1.08967 0.94709 1.23528 0.89180 1.03773 0.98491 1.47936 1.04466 1.36213 1.17009 1.22920 1.00495 0.97588 0.79912 1.19428 0.94433 0.90073 0.98405 1.20880 1.30535 1.13958 0.91902 0.92034 1.24993 0.95900 0.96725 0.96367 1.69958 1.35340 1.24199 1.22854 0.86520 0.79011 0.78950 0.82754 1.20029 1.21110 1.19977 1.78254 1.20027 1.12008 0.93429 1.75230 0.99329 1.18347 1.21202 1.45964 1.06940 1.46247 1.17138 1.22286 0.87013 1.01746 0.95836 1.23142 1.02153 0.97387 0.89161 1.22642 0.81253 1.00480 0.96458 1.88030 1.20635 1.78351 1.42795 0.90482 0.91252 0.91494 0.91622 0.87987 0.78363 0.88150 0.88667 0.94358 0.95653 0.92478 0.90136 0.89219 0.87158 0.88791 0.92176 0.87487 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.57 37.16 0.36 -0.45 16 2 C 0.09 0.64 3.42 -26.68 -0.09 0.55 16 3 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 4 C 0.04 0.37 4.30 -3.71 -0.02 0.35 16 5 N -0.45 -4.47 4.77 -174.17 -0.83 -5.30 16 6 C 0.35 4.62 7.22 -318.69 -2.30 2.32 16 7 N -0.31 -4.84 11.29 30.34 0.34 -4.50 16 8 N -0.27 -4.42 12.21 32.60 0.40 -4.02 16 9 C 0.28 4.42 7.94 -153.82 -1.22 3.20 16 10 C 0.02 0.35 7.06 -83.21 -0.59 -0.23 16 11 C 0.01 0.10 11.54 -16.62 -0.19 -0.10 16 12 N -0.26 -4.68 3.43 -60.93 -0.21 -4.89 16 13 C 0.11 1.95 6.38 -4.04 -0.03 1.92 16 14 C 0.01 0.34 5.10 -27.88 -0.14 0.20 16 15 C -0.53 -13.72 9.11 -34.44 -0.31 -14.04 16 16 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -25.40 13.29 55.43 0.74 -24.67 16 19 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 20 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 23 N -0.06 -1.10 12.88 60.35 0.78 -0.32 16 24 N -0.27 -4.83 10.76 33.01 0.36 -4.48 16 25 N -0.47 -6.19 3.23 -122.01 -0.39 -6.59 16 26 C 0.07 0.72 9.14 59.85 0.55 1.27 16 27 C 0.01 0.07 5.46 -3.71 -0.02 0.05 16 28 C 0.07 0.43 7.01 37.21 0.26 0.70 16 29 O -0.38 -3.15 10.47 -35.23 -0.37 -3.52 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.10 0.94 8.04 -51.93 -0.42 0.52 16 35 H 0.20 2.48 8.06 -52.48 -0.42 2.06 16 36 H 0.10 1.53 8.06 -51.93 -0.42 1.11 16 37 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 38 H 0.04 1.00 8.12 -51.93 -0.42 0.58 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.08 0.69 7.80 -51.93 -0.40 0.28 16 42 H 0.09 0.65 7.66 -51.93 -0.40 0.26 16 43 H 0.11 1.22 6.70 -51.93 -0.35 0.87 16 44 H 0.09 0.63 5.39 -51.93 -0.28 0.35 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 389.22 15.07 5.87 5.87 Total: -1.00 -32.53 389.22 -9.07 -41.60 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -6.88 Total: -1.84 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -3.84 Total: -2.66 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: 1.18 Total: -54.77 kcal Atomic # 8 Polarization: -3.15 SS G_CDS: -0.37 Total: -3.52 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.53 -9.07 -41.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340036002.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.993 kcal (2) G-P(sol) polarization free energy of solvation -32.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds