Wall clock time and date at job start Wed Apr 1 2020 04:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.51019 * 2 1 4 4 C 1.53098 * 109.50830 * 120.09019 * 2 1 3 5 5 N 1.47021 * 109.25505 * 176.82549 * 4 2 1 6 6 C 1.38538 * 110.99474 * 177.60619 * 5 4 2 7 7 N 1.31248 * 126.38197 * 0.02906 * 6 5 4 8 8 N 1.28505 * 110.10068 * 179.97438 * 7 6 5 9 9 C 1.31227 * 109.95790 * 359.97438 * 8 7 6 10 10 C 1.47942 * 126.47612 * 179.97438 * 9 8 7 11 11 C 1.36712 * 126.93667 * 0.02562 * 10 9 8 12 12 N 1.35202 * 106.02143 * 180.02562 * 11 10 9 13 13 C 1.46496 * 125.73148 * 180.02562 * 12 11 10 14 14 C 1.52998 * 109.47238 * 124.99782 * 13 12 11 15 15 C 1.50706 * 109.47348 * 179.97438 * 14 13 12 16 16 H 1.08000 * 119.99302 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00436 * 179.72505 * 15 14 13 18 18 N 1.31515 * 119.99684 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00405 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47050 * 59.99579 * 19 17 15 21 21 H 1.48496 * 109.47289 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46492 * 299.99554 * 19 17 15 23 23 N 1.28644 * 108.53461 * 0.25756 * 12 11 10 24 24 N 1.28601 * 110.54662 * 359.56472 * 23 12 11 25 25 N 1.36603 * 126.37878 * 180.28810 * 6 5 4 26 26 C 1.46498 * 127.17085 * 0.02562 * 25 6 5 27 27 C 1.47011 * 110.75310 * 301.38103 * 5 4 2 28 28 C 1.53095 * 109.25530 * 58.62105 * 27 5 4 29 29 O 1.43012 * 109.26114 * 303.14793 * 28 27 5 30 30 H 1.09002 * 109.46929 * 299.90812 * 1 2 3 31 31 H 1.08997 * 109.47234 * 59.91259 * 1 2 3 32 32 H 1.09006 * 109.47247 * 179.91003 * 1 2 3 33 33 H 1.08996 * 109.50787 * 56.89363 * 4 2 1 34 34 H 1.08994 * 109.54311 * 296.78411 * 4 2 1 35 35 H 1.08003 * 126.98721 * 0.02562 * 11 10 9 36 36 H 1.09000 * 109.47435 * 4.99686 * 13 12 11 37 37 H 1.09002 * 109.46784 * 244.99321 * 13 12 11 38 38 H 1.09001 * 109.47671 * 59.99927 * 14 13 12 39 39 H 1.08998 * 109.47454 * 299.99925 * 14 13 12 40 40 H 0.97004 * 120.00247 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.47423 * 270.18479 * 26 25 6 42 42 H 1.09002 * 109.47970 * 30.18624 * 26 25 6 43 43 H 1.09003 * 109.47181 * 150.18523 * 26 25 6 44 44 H 1.09006 * 109.50346 * 178.54890 * 27 5 4 45 45 H 1.08996 * 109.50785 * 298.68426 * 27 5 4 46 46 H 1.09005 * 109.50544 * 183.20956 * 28 27 5 47 47 H 1.09006 * 109.54484 * 63.10502 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7235 1.2486 5 7 3.5094 -0.7871 1.2051 6 6 4.0142 -1.3888 2.3463 7 7 3.3154 -1.8545 3.3550 8 7 4.0999 -2.3472 4.2456 9 6 5.3481 -2.2264 3.8593 10 6 6.5464 -2.6700 4.6050 11 6 6.5735 -3.2840 5.8261 12 7 7.8784 -3.4997 6.1064 13 6 8.3990 -4.1379 7.3179 14 6 9.2919 -5.3180 6.9293 15 6 9.8280 -5.9742 8.1756 16 1 9.5590 -5.5878 9.1476 17 6 10.6575 -7.0709 8.0751 18 7 10.9806 -7.5446 6.8915 19 14 11.3214 -7.8847 9.6199 20 1 10.1892 -8.3663 10.4513 21 1 12.1823 -9.0344 9.2429 22 1 12.1202 -6.9004 10.3935 23 7 8.5863 -3.0460 5.1328 24 7 7.8305 -2.5499 4.2182 25 7 5.3323 -1.6034 2.6337 26 6 6.4879 -1.2474 1.8066 27 6 3.9648 -1.4869 -0.0049 28 6 3.4343 -0.7557 -1.2409 29 8 2.0084 -0.6760 -1.1660 30 1 -0.3633 0.5124 0.8908 31 1 -0.3633 0.5152 -0.8892 32 1 -0.3634 -1.0277 -0.0016 33 1 1.6338 -1.7341 1.2761 34 1 1.7267 -0.1799 2.1394 35 1 5.7250 -3.5440 6.4417 36 1 7.5681 -4.4958 7.9259 37 1 8.9813 -3.4142 7.8883 38 1 10.1229 -4.9603 6.3214 39 1 8.7097 -6.0418 6.3589 40 1 11.5639 -8.3164 6.8207 41 1 6.7241 -2.0743 1.1369 42 1 6.2546 -0.3594 1.2190 43 1 7.3451 -1.0434 2.4483 44 1 5.0546 -1.4998 -0.0295 45 1 3.5881 -2.5097 0.0026 46 1 3.7216 -1.3029 -2.1388 47 1 3.8536 0.2498 -1.2777 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340036002.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:09 Heat of formation + Delta-G solvation = 124.483815 kcal Electronic energy + Delta-G solvation = -29833.562789 eV Core-core repulsion = 25668.866440 eV Total energy + Delta-G solvation = -4164.696349 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.46978 -43.99871 -40.82467 -37.25659 -36.90877 -36.02493 -34.82406 -33.83815 -33.20300 -31.84793 -30.79048 -29.27709 -28.50914 -27.46677 -27.04030 -25.12573 -24.32910 -24.03660 -22.69906 -22.30218 -21.49730 -21.39300 -19.06608 -18.63211 -17.90355 -17.84537 -17.49439 -17.31847 -17.16052 -16.72995 -16.49853 -16.38913 -15.90611 -15.66031 -15.50763 -15.31398 -15.07956 -14.43377 -14.33560 -13.97707 -13.69164 -13.66802 -13.19307 -13.11495 -12.96625 -12.92003 -12.79267 -12.69638 -12.64166 -12.44870 -12.23543 -12.20818 -12.02498 -11.81604 -11.62967 -11.54202 -11.44698 -11.36936 -11.02091 -10.77350 -10.60964 -10.37811 -9.30728 -8.25555 -6.39201 0.02923 0.62788 0.89811 1.17529 1.37766 1.46199 1.46437 1.54389 1.94385 2.31264 2.40307 2.67167 2.73207 3.10431 3.40388 3.43631 3.65524 3.68992 3.74954 3.86338 3.95214 4.01876 4.08591 4.18591 4.19734 4.21278 4.25379 4.30495 4.49703 4.49940 4.56399 4.61196 4.64729 4.70850 4.74831 4.81296 4.84774 4.92128 5.03711 5.18742 5.27437 5.29444 5.41089 5.44029 5.47809 5.74272 5.88843 6.04488 6.12929 6.76933 7.27251 7.32146 7.45659 8.86556 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.030257 B = 0.001768 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.186901 B =15831.904326 C =16120.194404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.093 3.907 3 H 0.081 0.919 4 C 0.042 3.958 5 N -0.443 5.443 6 C 0.365 3.635 7 N -0.340 5.340 8 N -0.283 5.283 9 C 0.265 3.735 10 C 0.017 3.983 11 C 0.017 3.983 12 N -0.271 5.271 13 C 0.122 3.878 14 C 0.021 3.979 15 C -0.543 4.543 16 H 0.082 0.918 17 C 0.002 3.998 18 N -0.932 5.932 19 Si 0.971 3.029 20 H -0.262 1.262 21 H -0.290 1.290 22 H -0.264 1.264 23 N -0.097 5.097 24 N -0.272 5.272 25 N -0.468 5.468 26 C 0.070 3.930 27 C 0.008 3.992 28 C 0.070 3.930 29 O -0.395 6.395 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.050 0.950 34 H 0.098 0.902 35 H 0.231 0.769 36 H 0.134 0.866 37 H 0.110 0.890 38 H 0.002 0.998 39 H -0.006 1.006 40 H 0.264 0.736 41 H 0.093 0.907 42 H 0.118 0.882 43 H 0.097 0.903 44 H 0.108 0.892 45 H 0.046 0.954 46 H 0.128 0.872 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.752 17.262 -14.690 28.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.035 3.965 3 H 0.098 0.902 4 C -0.085 4.085 5 N -0.167 5.167 6 C 0.008 3.992 7 N -0.187 5.187 8 N -0.125 5.125 9 C -0.003 4.003 10 C -0.123 4.123 11 C -0.138 4.138 12 N -0.062 5.062 13 C 0.004 3.996 14 C -0.017 4.017 15 C -0.581 4.581 16 H 0.100 0.900 17 C -0.196 4.196 18 N -0.572 5.572 19 Si 0.795 3.205 20 H -0.187 1.187 21 H -0.216 1.216 22 H -0.189 1.189 23 N -0.077 5.077 24 N -0.141 5.141 25 N -0.162 5.162 26 C -0.071 4.071 27 C -0.119 4.119 28 C -0.007 4.007 29 O -0.314 6.314 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.116 0.884 35 H 0.248 0.752 36 H 0.152 0.848 37 H 0.129 0.871 38 H 0.021 0.979 39 H 0.012 0.988 40 H 0.073 0.927 41 H 0.112 0.888 42 H 0.136 0.864 43 H 0.116 0.884 44 H 0.126 0.874 45 H 0.064 0.936 46 H 0.146 0.854 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.300 17.395 -14.672 28.585 hybrid contribution 0.826 -1.363 0.549 1.686 sum -16.474 16.032 -14.123 26.978 Atomic orbital electron populations 1.21764 0.90865 1.03304 1.04052 1.22320 0.96397 0.95511 0.82266 0.90157 1.22889 0.82242 1.01898 1.01466 1.59029 1.12714 1.47012 0.97928 1.22738 0.81340 0.98496 0.96625 1.74485 1.25248 1.17356 1.01563 1.74219 0.97350 1.18805 1.22172 1.20845 0.92528 1.01208 0.85696 1.18549 0.89616 1.08969 0.95144 1.24051 0.89010 1.02342 0.98422 1.47838 1.05116 1.36481 1.16760 1.22702 1.00996 0.95778 0.80114 1.19179 0.93920 0.91523 0.97054 1.21424 1.29738 1.13642 0.93302 0.89998 1.25996 0.96470 0.97734 0.99449 1.70119 1.36618 1.24987 1.25445 0.85402 0.78535 0.77742 0.78790 1.18695 1.21624 1.18850 1.78247 1.21143 1.13772 0.94490 1.75185 0.99914 1.18030 1.20937 1.46122 1.07739 1.45624 1.16685 1.22512 0.85574 1.03519 0.95539 1.23284 1.03090 0.96729 0.88791 1.22821 0.80318 1.01355 0.96197 1.88023 1.21799 1.78563 1.42995 0.89238 0.90441 0.92241 0.93151 0.88376 0.75227 0.84802 0.87147 0.97946 0.98796 0.92705 0.88814 0.86364 0.88446 0.87364 0.93593 0.85398 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.57 71.98 0.69 -0.69 16 2 C 0.09 1.19 3.42 30.63 0.10 1.29 16 3 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 4 C 0.04 0.72 4.30 86.31 0.37 1.09 16 5 N -0.44 -8.23 4.77 -704.94 -3.36 -11.59 16 6 C 0.36 9.26 7.22 260.05 1.88 11.14 16 7 N -0.34 -10.50 11.29 -57.92 -0.65 -11.15 16 8 N -0.28 -9.34 12.21 -50.79 -0.62 -9.96 16 9 C 0.27 8.23 7.94 136.28 1.08 9.32 16 10 C 0.02 0.56 7.06 40.93 0.29 0.85 16 11 C 0.02 0.52 11.54 83.82 0.97 1.49 16 12 N -0.27 -9.46 3.43 -346.69 -1.19 -10.65 16 13 C 0.12 4.23 6.38 86.38 0.55 4.78 16 14 C 0.02 1.03 5.10 29.85 0.15 1.18 16 15 C -0.54 -27.71 9.11 25.60 0.23 -27.48 16 16 H 0.08 3.76 7.74 -2.91 -0.02 3.73 16 17 C 0.00 0.12 5.46 84.65 0.46 0.59 16 18 N -0.93 -54.90 13.29 21.45 0.28 -54.61 16 19 Si 0.97 41.46 29.54 68.60 2.03 43.49 16 20 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 21 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 23 N -0.10 -3.80 12.88 37.02 0.48 -3.32 16 24 N -0.27 -9.72 10.76 -49.48 -0.53 -10.25 16 25 N -0.47 -11.97 3.23 -539.93 -1.74 -13.71 16 26 C 0.07 1.26 9.14 127.77 1.17 2.43 16 27 C 0.01 0.11 5.46 86.31 0.47 0.58 16 28 C 0.07 0.71 7.01 72.01 0.50 1.21 16 29 O -0.39 -5.81 10.47 -148.98 -1.56 -7.37 16 30 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.05 1.02 8.14 -2.39 -0.02 1.01 16 34 H 0.10 1.75 8.04 -2.39 -0.02 1.73 16 35 H 0.23 5.25 8.06 -2.91 -0.02 5.23 16 36 H 0.13 3.73 8.06 -2.39 -0.02 3.71 16 37 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 38 H 0.00 0.12 8.12 -2.39 -0.02 0.10 16 39 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 40 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 41 H 0.09 1.46 7.80 -2.39 -0.02 1.44 16 42 H 0.12 1.43 7.66 -2.39 -0.02 1.41 16 43 H 0.10 2.09 6.70 -2.39 -0.02 2.07 16 44 H 0.11 1.19 5.39 -2.38 -0.01 1.18 16 45 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.13 0.77 8.14 -2.38 -0.02 0.75 16 47 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 Total: -1.00 -72.52 389.22 3.03 -69.49 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 0.99 Total: 11.86 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 8.92 Total: 7.79 kcal Atomic # 7 Polarization: -117.92 SS G_CDS: -7.34 Total: -125.26 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -1.56 Total: -7.37 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -72.52 3.03 -69.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340036002.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.972 kcal (2) G-P(sol) polarization free energy of solvation -72.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds