Wall clock time and date at job start Wed Apr 1 2020 05:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37495 * 127.17853 * 2 1 4 4 C 1.47952 * 126.47210 * 359.94307 * 3 2 1 5 5 C 1.36711 * 126.93766 * 179.97438 * 4 3 2 6 6 N 1.35202 * 106.01719 * 180.02562 * 5 4 3 7 7 C 1.46502 * 125.72813 * 179.97438 * 6 5 4 8 8 C 1.52994 * 109.47319 * 124.99766 * 7 6 5 9 9 C 1.50704 * 109.47204 * 179.97438 * 8 7 6 10 10 H 1.08004 * 119.99639 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00032 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99733 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99911 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46997 * 90.00363 * 13 11 9 15 15 H 1.48500 * 109.46914 * 210.00041 * 13 11 9 16 16 H 1.48498 * 109.46884 * 330.00053 * 13 11 9 17 17 N 1.28641 * 108.54076 * 0.02562 * 6 5 4 18 18 N 1.28608 * 110.54259 * 359.97438 * 17 6 5 19 19 N 1.31222 * 107.05419 * 180.20925 * 3 2 1 20 20 N 1.28510 * 109.95699 * 359.62174 * 19 3 2 21 21 C 1.31250 * 110.09818 * 0.39075 * 20 19 3 22 22 N 1.38530 * 126.37887 * 179.76909 * 21 20 19 23 23 C 1.40468 * 110.99710 * 304.46694 * 22 21 20 24 24 C 1.54398 * 111.44929 * 187.82431 * 23 22 21 25 25 C 1.50716 * 109.13517 * 284.56980 * 24 23 22 26 26 O 1.44224 * 112.84912 * 91.52572 * 25 24 23 27 27 C 1.43933 * 116.11673 * 318.68743 * 26 25 24 28 28 C 1.47598 * 111.00460 * 72.91425 * 22 21 20 29 29 H 1.09000 * 109.47078 * 84.53209 * 1 2 3 30 30 H 1.09003 * 109.47150 * 204.53059 * 1 2 3 31 31 H 1.09000 * 109.47115 * 324.52801 * 1 2 3 32 32 H 1.07997 * 126.98610 * 359.75104 * 5 4 3 33 33 H 1.09005 * 109.46807 * 245.00092 * 7 6 5 34 34 H 1.09004 * 109.47238 * 4.99755 * 7 6 5 35 35 H 1.08997 * 109.47173 * 299.99965 * 8 7 6 36 36 H 1.09004 * 109.46974 * 59.99828 * 8 7 6 37 37 H 0.97000 * 119.99678 * 180.02562 * 12 11 9 38 38 H 1.08994 * 109.08374 * 308.33360 * 23 22 21 39 39 H 1.09002 * 109.08406 * 67.38962 * 23 22 21 40 40 H 1.08999 * 109.52196 * 44.46916 * 24 23 22 41 41 H 1.09004 * 109.52368 * 164.59833 * 24 23 22 42 42 H 1.09006 * 108.80694 * 212.39429 * 25 24 23 43 43 H 1.08999 * 108.81202 * 330.65815 * 25 24 23 44 44 H 1.09003 * 108.99505 * 79.86642 * 27 26 25 45 45 H 1.08995 * 108.99955 * 198.70159 * 27 26 25 46 46 H 1.08994 * 109.64584 * 272.67965 * 28 22 21 47 47 H 1.09001 * 109.63604 * 33.29942 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2959 1.0955 0.0000 4 6 1.8794 2.5152 -0.0012 5 6 2.6967 3.6111 -0.0007 6 7 1.8780 4.6870 -0.0016 7 6 2.3063 6.0880 -0.0010 8 6 1.6658 6.8178 -1.1834 9 6 2.1060 8.2591 -1.1823 10 1 2.7760 8.6185 -0.4153 11 6 1.6533 9.1188 -2.1606 12 7 0.8371 8.6812 -3.0943 13 14 2.1995 10.9052 -2.1597 14 1 3.4416 11.0434 -2.9618 15 1 1.1313 11.7497 -2.7520 16 1 2.4599 11.3425 -0.7646 17 7 0.6597 4.2740 -0.0021 18 7 0.6190 2.9885 -0.0020 19 7 3.5280 0.6440 -0.0046 20 7 3.5243 -0.6411 0.0006 21 6 2.2904 -1.0885 0.0003 22 7 1.8982 -2.4171 0.0005 23 6 2.4678 -3.1102 -1.0804 24 6 1.8888 -4.5361 -1.2049 25 6 2.4879 -5.4081 -0.1315 26 8 1.7011 -5.4291 1.0770 27 6 1.1527 -4.1667 1.4980 28 6 2.1363 -3.0388 1.3178 29 1 -0.3633 0.0979 -1.0230 30 1 -0.3633 -0.9349 0.4267 31 1 -0.3633 0.8369 0.5964 32 1 3.7767 3.6163 0.0044 33 1 1.9961 6.5624 0.9301 34 1 3.3917 6.1362 -0.0892 35 1 1.9760 6.3434 -2.1144 36 1 0.5804 6.7696 -1.0952 37 1 0.5189 9.2859 -3.7827 38 1 2.2667 -2.5622 -2.0008 39 1 3.5458 -3.1761 -0.9332 40 1 0.8061 -4.5014 -1.0840 41 1 2.1329 -4.9440 -2.1858 42 1 2.5737 -6.4257 -0.5127 43 1 3.4857 -5.0386 0.1052 44 1 0.2586 -3.9550 0.9116 45 1 0.8788 -4.2323 2.5510 46 1 3.1531 -3.4292 1.3604 47 1 1.9921 -2.2978 2.1041 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351277888.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:30 Heat of formation + Delta-G solvation = 149.611811 kcal Electronic energy + Delta-G solvation = -29901.164345 eV Core-core repulsion = 25737.557628 eV Total energy + Delta-G solvation = -4163.606717 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.26316 -42.84164 -40.16844 -36.87067 -35.45507 -34.89710 -33.19922 -32.97267 -32.03636 -30.26456 -29.94251 -28.29972 -27.60933 -26.58746 -25.70718 -23.81418 -23.09950 -22.42755 -21.44117 -21.31001 -20.62392 -20.20414 -18.11913 -17.43163 -17.30269 -16.79398 -16.53398 -16.18229 -16.01511 -15.65688 -15.43287 -15.35689 -14.92480 -14.60390 -14.16041 -13.91852 -13.59764 -13.53639 -13.42991 -12.99506 -12.93679 -12.53957 -12.19742 -11.96959 -11.89589 -11.83320 -11.65243 -11.52070 -11.23366 -11.16226 -11.04643 -10.97944 -10.74228 -10.55070 -10.33662 -10.19571 -9.99717 -9.94076 -9.53088 -9.48789 -9.18070 -8.59006 -8.50489 -6.22646 -4.29770 1.11860 1.91461 1.93147 2.29462 2.69415 3.13874 3.20156 3.25695 3.27595 3.29503 3.34070 3.83304 4.21306 4.28267 4.35365 4.41389 4.53009 4.55342 4.70770 4.77991 4.82725 4.97227 5.03774 5.04953 5.09578 5.12714 5.14917 5.19809 5.27935 5.34393 5.41913 5.44802 5.54786 5.58254 5.70781 5.74202 5.83836 5.89577 5.99720 6.18293 6.28904 6.40784 6.75115 6.78463 6.92752 7.31173 7.40185 7.71113 8.02583 8.48330 8.63890 8.75245 9.36374 10.88302 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.034718 B = 0.001743 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.298692 B =16060.115871 C =16105.994162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.452 5.452 3 C 0.287 3.713 4 C 0.018 3.982 5 C 0.008 3.992 6 N -0.265 5.265 7 C 0.109 3.891 8 C 0.014 3.986 9 C -0.534 4.534 10 H 0.062 0.938 11 C 0.063 3.937 12 N -0.886 5.886 13 Si 0.900 3.100 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.272 1.272 17 N -0.056 5.056 18 N -0.270 5.270 19 N -0.271 5.271 20 N -0.301 5.301 21 C 0.339 3.661 22 N -0.472 5.472 23 C 0.072 3.928 24 C -0.152 4.152 25 C 0.057 3.943 26 O -0.392 6.392 27 C 0.064 3.936 28 C 0.037 3.963 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.200 0.800 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.025 0.975 36 H 0.038 0.962 37 H 0.265 0.735 38 H 0.080 0.920 39 H 0.050 0.950 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.052 0.948 44 H 0.068 0.932 45 H 0.098 0.902 46 H 0.069 0.931 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.311 -25.905 7.253 26.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.143 5.143 3 C 0.020 3.980 4 C -0.121 4.121 5 C -0.148 4.148 6 N -0.056 5.056 7 C -0.009 4.009 8 C -0.024 4.024 9 C -0.572 4.572 10 H 0.080 0.920 11 C -0.140 4.140 12 N -0.523 5.523 13 Si 0.728 3.272 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.197 1.197 17 N -0.037 5.037 18 N -0.138 5.138 19 N -0.115 5.115 20 N -0.146 5.146 21 C -0.016 4.016 22 N -0.197 5.197 23 C -0.056 4.056 24 C -0.190 4.190 25 C -0.019 4.019 26 O -0.312 6.312 27 C -0.013 4.013 28 C -0.089 4.089 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.120 0.880 32 H 0.217 0.783 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.043 0.957 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.068 0.932 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.116 0.884 46 H 0.088 0.912 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.669 -25.599 7.115 26.578 hybrid contribution 0.766 1.122 -0.314 1.394 sum 1.435 -24.477 6.802 25.445 Atomic orbital electron populations 1.22167 0.74016 1.05112 1.04819 1.46199 1.09394 1.05281 1.53453 1.21028 0.86429 0.86048 1.04455 1.18351 0.91169 0.88583 1.14032 1.23537 0.99777 0.85177 1.06332 1.47953 1.04397 1.10271 1.42991 1.22929 1.01244 0.71934 1.04822 1.19433 0.97648 0.94801 0.90493 1.20915 1.30083 0.93472 1.12747 0.91986 1.24999 0.94655 0.99203 0.95166 1.69969 1.31990 1.35977 1.14381 0.86462 0.78382 0.83982 0.78424 1.20457 1.21013 1.19655 1.78270 1.02609 1.04798 1.17999 1.75268 1.19011 1.01829 1.17720 1.74380 1.15847 1.02411 1.18849 1.74558 1.16798 1.03576 1.19704 1.21947 0.85901 0.87525 1.06270 1.55834 1.62108 0.96257 1.05549 1.21233 0.97574 0.94308 0.92492 1.22097 1.02692 0.93919 1.00285 1.22420 0.94011 1.00862 0.84609 1.88300 1.70367 1.30429 1.42058 1.22418 0.95639 0.82461 1.00787 1.22572 1.00408 0.97531 0.88363 0.89898 0.89006 0.87974 0.78346 0.88644 0.88145 0.95659 0.94321 0.92527 0.90176 0.93205 0.89540 0.89091 0.89104 0.92999 0.91406 0.88429 0.91245 0.89237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.80 10.74 59.85 0.64 1.45 16 2 N -0.45 -5.81 3.23 -122.01 -0.39 -6.21 16 3 C 0.29 4.38 7.94 -153.82 -1.22 3.16 16 4 C 0.02 0.29 7.07 -83.21 -0.59 -0.29 16 5 C 0.01 0.12 11.54 -16.62 -0.19 -0.07 16 6 N -0.26 -4.63 3.43 -60.93 -0.21 -4.84 16 7 C 0.11 1.92 6.38 -4.04 -0.03 1.90 16 8 C 0.01 0.33 5.10 -27.88 -0.14 0.19 16 9 C -0.53 -13.65 9.11 -34.44 -0.31 -13.97 16 10 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -25.34 13.29 55.43 0.74 -24.60 16 13 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 14 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 16 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 17 N -0.06 -1.08 12.88 60.35 0.78 -0.30 16 18 N -0.27 -4.73 10.91 33.01 0.36 -4.37 16 19 N -0.27 -4.37 12.21 32.60 0.40 -3.97 16 20 N -0.30 -4.49 12.05 30.34 0.37 -4.13 16 21 C 0.34 4.21 6.19 -318.70 -1.97 2.23 16 22 N -0.47 -4.34 4.01 -179.20 -0.72 -5.06 16 23 C 0.07 0.59 4.83 -6.43 -0.03 0.56 16 24 C -0.15 -0.89 5.67 -27.14 -0.15 -1.04 16 25 C 0.06 0.36 6.26 36.01 0.23 0.59 16 26 O -0.39 -3.22 10.92 -35.23 -0.38 -3.61 16 27 C 0.06 0.43 6.35 36.02 0.23 0.66 16 28 C 0.04 0.30 5.29 -4.58 -0.02 0.27 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.09 0.68 8.11 -51.93 -0.42 0.26 16 31 H 0.10 1.09 7.01 -51.93 -0.36 0.73 16 32 H 0.20 2.42 8.06 -52.49 -0.42 2.00 16 33 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 34 H 0.10 1.51 8.06 -51.93 -0.42 1.09 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.04 1.00 8.11 -51.93 -0.42 0.58 16 37 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.08 0.72 8.00 -51.93 -0.42 0.30 16 39 H 0.05 0.45 7.59 -51.93 -0.39 0.06 16 40 H 0.09 0.55 7.25 -51.93 -0.38 0.17 16 41 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.05 0.34 6.61 -51.93 -0.34 0.00 16 44 H 0.07 0.45 7.26 -51.93 -0.38 0.07 16 45 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.07 0.59 6.85 -51.93 -0.36 0.24 16 47 H 0.09 0.73 7.83 -51.93 -0.41 0.32 16 LS Contribution 387.38 15.07 5.84 5.84 Total: -1.00 -31.87 387.38 -8.72 -40.58 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -6.79 Total: -1.84 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -3.67 Total: -2.77 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: 1.32 Total: -53.47 kcal Atomic # 8 Polarization: -3.22 SS G_CDS: -0.38 Total: -3.61 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.87 -8.72 -40.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351277888.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.194 kcal (2) G-P(sol) polarization free energy of solvation -31.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 158.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds