Wall clock time and date at job start Wed Apr 1 2020 05:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42900 * 114.00155 * 2 1 4 4 C 1.53002 * 109.47406 * 180.02562 * 3 2 1 5 5 O 1.42898 * 109.46850 * 65.00101 * 4 3 2 6 6 C 1.42906 * 113.99620 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.46842 * 180.02562 * 6 5 4 8 8 H 1.09005 * 110.88529 * 302.57611 * 7 6 5 9 9 C 1.55160 * 111.00539 * 66.45219 * 7 6 5 10 10 C 1.54324 * 102.94283 * 153.57848 * 9 7 6 11 11 N 1.47027 * 107.26796 * 337.80601 * 10 9 7 12 12 C 1.34775 * 125.64666 * 178.96557 * 11 10 9 13 13 O 1.21287 * 120.00061 * 179.97438 * 12 11 10 14 14 C 1.50707 * 120.00028 * 359.97243 * 12 11 10 15 15 H 1.08998 * 109.46819 * 60.00069 * 14 12 11 16 16 C 1.50701 * 109.46880 * 300.00261 * 14 12 11 17 17 H 1.07999 * 120.00286 * 334.67192 * 16 14 12 18 18 C 1.37874 * 119.99504 * 154.67606 * 16 14 12 19 19 N 1.31516 * 120.00018 * 183.50534 * 18 16 14 20 20 Si 1.86798 * 120.00293 * 3.50598 * 18 16 14 21 21 H 1.48503 * 109.47456 * 84.82179 * 20 18 16 22 22 H 1.48503 * 109.47408 * 204.82224 * 20 18 16 23 23 H 1.48497 * 109.47166 * 324.82192 * 20 18 16 24 24 C 1.50696 * 109.46869 * 180.02562 * 14 12 11 25 25 C 1.38237 * 120.00543 * 66.25878 * 24 14 12 26 26 C 1.38233 * 120.00371 * 179.74102 * 25 24 14 27 27 C 1.38236 * 119.99585 * 0.53019 * 26 25 24 28 28 C 1.38234 * 120.00328 * 359.74128 * 27 26 25 29 29 C 1.38235 * 119.99919 * 359.97438 * 28 27 26 30 30 C 1.47421 * 108.70617 * 358.94383 * 11 10 9 31 31 H 1.09009 * 109.47195 * 299.99888 * 1 2 3 32 32 H 1.09004 * 109.47607 * 59.99495 * 1 2 3 33 33 H 1.08996 * 109.47416 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47128 * 60.00411 * 3 2 1 35 35 H 1.08996 * 109.47525 * 300.00660 * 3 2 1 36 36 H 1.08997 * 109.47359 * 185.00136 * 4 3 2 37 37 H 1.09006 * 109.46906 * 305.00294 * 4 3 2 38 38 H 1.08997 * 109.46813 * 299.99730 * 6 5 4 39 39 H 1.08996 * 109.47077 * 60.00510 * 6 5 4 40 40 H 1.09004 * 110.71892 * 271.93676 * 9 7 6 41 41 H 1.09000 * 110.71451 * 35.03611 * 9 7 6 42 42 H 1.08995 * 109.88825 * 97.22049 * 10 9 7 43 43 H 1.08998 * 109.88302 * 218.23785 * 10 9 7 44 44 H 0.97000 * 120.00413 * 179.97438 * 19 18 16 45 45 H 1.07999 * 119.99295 * 359.97438 * 25 24 14 46 46 H 1.07997 * 120.00446 * 180.29403 * 26 25 24 47 47 H 1.08003 * 119.99989 * 179.77114 * 27 26 25 48 48 H 1.07999 * 119.99902 * 179.97438 * 28 27 26 49 49 H 1.07998 * 120.00084 * 179.97438 * 29 28 27 50 50 H 1.09002 * 110.36666 * 265.29331 * 30 11 10 51 51 H 1.09000 * 110.36721 * 142.96838 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9648 0.5797 -1.2220 6 6 5.3811 0.4192 -1.3246 7 6 5.7245 -0.2338 -2.6650 8 1 5.2172 -1.1927 -2.7713 9 6 5.3824 0.7105 -3.8476 10 6 6.3595 0.2514 -4.9503 11 7 7.4792 -0.4307 -4.2850 12 6 8.5345 -0.9955 -4.9044 13 8 9.4041 -1.5333 -4.2520 14 6 8.6341 -0.9590 -6.4077 15 1 8.6541 0.0772 -6.7454 16 6 7.4421 -1.6597 -7.0072 17 1 6.9203 -2.4175 -6.4417 18 6 7.0179 -1.3333 -8.2779 19 7 5.9373 -1.8946 -8.7747 20 14 7.9779 -0.0941 -9.2937 21 1 9.0919 -0.7838 -9.9927 22 1 7.0761 0.5299 -10.2951 23 1 8.5289 0.9569 -8.4010 24 6 9.8974 -1.6548 -6.8445 25 6 10.0425 -3.0147 -6.6434 26 6 11.1992 -3.6539 -7.0489 27 6 12.2153 -2.9312 -7.6456 28 6 12.0726 -1.5702 -7.8417 29 6 10.9135 -0.9321 -7.4415 30 6 7.2566 -0.3941 -2.8282 31 1 -0.3634 0.5139 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.6886 1.8464 0.8900 35 1 1.6885 1.8464 -0.8899 36 1 3.9785 2.1765 0.0889 37 1 3.8514 0.5681 0.8410 38 1 5.8627 1.3950 -1.2623 39 1 5.7349 -0.2134 -0.5106 40 1 4.3491 0.5714 -4.1657 41 1 5.5642 1.7503 -3.5758 42 1 5.8560 -0.4375 -5.6285 43 1 6.7256 1.1157 -5.5045 44 1 5.6385 -1.6648 -9.6685 45 1 9.2505 -3.5784 -6.1729 46 1 11.3106 -4.7172 -6.8961 47 1 13.1205 -3.4298 -7.9591 48 1 12.8666 -1.0056 -8.3075 49 1 10.8021 0.1312 -7.5943 50 1 7.7761 0.4562 -2.3863 51 1 7.5917 -1.3245 -2.3697 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354698651.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:02 Heat of formation + Delta-G solvation = -100.181311 kcal Electronic energy + Delta-G solvation = -30692.343700 eV Core-core repulsion = 26556.859981 eV Total energy + Delta-G solvation = -4135.483719 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.69255 -38.76470 -38.24508 -37.44309 -36.39780 -33.68541 -32.08612 -31.43124 -30.22451 -30.10216 -29.00387 -27.81666 -26.53589 -25.31103 -23.59658 -22.80899 -22.36013 -21.79688 -20.74991 -20.12941 -18.44587 -17.20152 -17.08859 -17.04185 -16.30534 -16.18748 -15.88754 -15.57460 -15.34629 -15.06100 -14.61948 -14.54114 -14.32858 -13.76040 -13.54622 -13.29742 -13.23211 -12.73038 -12.67216 -12.64703 -12.43898 -12.41524 -12.14266 -11.96851 -11.89186 -11.74241 -11.48974 -11.23455 -11.08847 -10.95816 -10.84495 -10.60854 -10.45019 -10.40012 -10.21514 -9.95222 -9.89271 -9.69247 -9.49959 -8.91040 -8.68460 -8.10060 -7.92498 -7.78074 -6.26692 -4.29405 2.17994 2.24585 3.19491 3.26674 3.32279 3.34702 3.50962 3.61676 3.82604 4.26592 4.63709 4.71288 4.74959 4.87443 4.91294 4.95903 5.04032 5.05296 5.09632 5.19332 5.23885 5.32026 5.41709 5.44415 5.48889 5.57835 5.61077 5.63262 5.66102 5.74056 5.81536 5.91555 5.98290 6.06419 6.22513 6.32238 6.33478 6.38521 6.42005 6.54452 6.71248 6.79099 6.86625 6.89155 7.04999 7.11285 7.20087 7.28851 7.31804 7.63394 7.83365 8.20041 8.31086 8.71816 9.08494 9.31324 10.83834 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.015148 B = 0.002475 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.025305 B =11309.671782 C =12286.970154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.063 3.937 4 C 0.063 3.937 5 O -0.375 6.375 6 C 0.076 3.924 7 C -0.101 4.101 8 H 0.094 0.906 9 C -0.120 4.120 10 C 0.102 3.898 11 N -0.612 5.612 12 C 0.553 3.447 13 O -0.562 6.562 14 C 0.025 3.975 15 H 0.069 0.931 16 C -0.506 4.506 17 H 0.082 0.918 18 C 0.088 3.912 19 N -0.883 5.883 20 Si 0.862 3.138 21 H -0.266 1.266 22 H -0.287 1.287 23 H -0.263 1.263 24 C -0.030 4.030 25 C -0.070 4.070 26 C -0.130 4.130 27 C -0.143 4.143 28 C -0.129 4.129 29 C -0.138 4.138 30 C 0.117 3.883 31 H 0.038 0.962 32 H 0.042 0.958 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.051 0.949 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.101 0.899 43 H 0.059 0.941 44 H 0.268 0.732 45 H 0.118 0.882 46 H 0.111 0.889 47 H 0.109 0.891 48 H 0.109 0.891 49 H 0.108 0.892 50 H 0.059 0.941 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.699 8.131 13.881 16.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C -0.014 4.014 4 C -0.014 4.014 5 O -0.294 6.294 6 C -0.001 4.001 7 C -0.120 4.120 8 H 0.112 0.888 9 C -0.158 4.158 10 C -0.021 4.021 11 N -0.346 5.346 12 C 0.344 3.656 13 O -0.440 6.440 14 C 0.004 3.996 15 H 0.087 0.913 16 C -0.543 4.543 17 H 0.100 0.900 18 C -0.117 4.117 19 N -0.519 5.519 20 Si 0.689 3.311 21 H -0.191 1.191 22 H -0.213 1.213 23 H -0.188 1.188 24 C -0.032 4.032 25 C -0.088 4.088 26 C -0.148 4.148 27 C -0.161 4.161 28 C -0.147 4.147 29 C -0.156 4.156 30 C -0.007 4.007 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.119 0.881 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.136 0.864 46 H 0.129 0.871 47 H 0.127 0.873 48 H 0.127 0.873 49 H 0.126 0.874 50 H 0.077 0.923 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.320 7.568 13.846 16.360 hybrid contribution 0.313 1.019 -0.544 1.197 sum -4.007 8.587 13.302 16.332 Atomic orbital electron populations 1.22747 0.81109 1.02921 0.99779 1.87979 1.19554 1.27250 1.95343 1.22561 0.92516 0.85554 1.00760 1.22481 0.93273 0.97487 0.88111 1.87974 1.22074 1.81954 1.37355 1.22384 0.81413 0.99115 0.97187 1.22307 0.95679 1.00526 0.93460 0.88774 1.22654 1.00192 0.98410 0.94564 1.22170 0.87044 0.97585 0.95259 1.48239 1.23049 1.57660 1.05680 1.20760 0.78719 0.75453 0.90650 1.90602 1.39858 1.45462 1.68116 1.18510 0.93795 0.98508 0.88807 0.91342 1.20448 1.09841 1.23052 1.00991 0.89975 1.24889 0.94174 0.95588 0.97023 1.69857 1.22259 1.42630 1.17109 0.87070 0.80739 0.82385 0.80870 1.19084 1.21267 1.18785 1.20112 0.93778 0.94321 0.94938 1.20857 0.96400 0.94324 0.97261 1.21038 0.94477 0.99138 1.00126 1.20862 0.98820 0.94348 1.02040 1.20873 0.97483 0.94848 1.01534 1.20988 0.93998 0.99116 1.01478 1.21940 0.93586 1.01637 0.83514 0.94342 0.93933 0.89544 0.92046 0.92299 0.91914 0.92566 0.93180 0.93092 0.89905 0.91495 0.88052 0.92278 0.92167 0.86396 0.87093 0.87328 0.87294 0.87430 0.92321 0.90740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.28 10.67 -40.08 -0.43 -4.71 16 3 C 0.06 0.54 6.32 37.16 0.23 0.78 16 4 C 0.06 0.58 6.32 37.16 0.23 0.81 16 5 O -0.37 -4.61 10.16 -40.08 -0.41 -5.02 16 6 C 0.08 0.85 5.38 37.16 0.20 1.05 16 7 C -0.10 -1.37 3.33 -88.47 -0.29 -1.66 16 8 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 9 C -0.12 -1.67 6.28 -24.89 -0.16 -1.83 16 10 C 0.10 1.80 6.08 -3.06 -0.02 1.78 16 11 N -0.61 -11.76 3.32 -170.52 -0.57 -12.32 16 12 C 0.55 12.45 7.10 -10.98 -0.08 12.37 16 13 O -0.56 -13.75 15.68 5.55 0.09 -13.66 16 14 C 0.03 0.58 1.43 -94.07 -0.13 0.45 16 15 H 0.07 1.58 5.41 -51.93 -0.28 1.29 16 16 C -0.51 -12.94 5.98 -34.44 -0.21 -13.14 16 17 H 0.08 2.32 8.05 -52.49 -0.42 1.90 16 18 C 0.09 2.32 5.47 -17.82 -0.10 2.22 16 19 N -0.88 -24.77 13.96 55.43 0.77 -24.00 16 20 Si 0.86 20.24 26.05 -169.99 -4.43 15.81 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.26 -5.78 6.14 56.52 0.35 -5.43 16 24 C -0.03 -0.70 3.62 -104.62 -0.38 -1.08 16 25 C -0.07 -1.58 8.32 -39.58 -0.33 -1.91 16 26 C -0.13 -2.52 10.05 -39.58 -0.40 -2.92 16 27 C -0.14 -2.57 10.05 -39.58 -0.40 -2.97 16 28 C -0.13 -2.41 10.05 -39.58 -0.40 -2.81 16 29 C -0.14 -2.89 8.64 -39.58 -0.34 -3.23 16 30 C 0.12 1.82 6.38 -2.53 -0.02 1.80 16 31 H 0.04 0.23 8.14 -51.92 -0.42 -0.20 16 32 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.05 0.49 8.11 -51.93 -0.42 0.07 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.07 0.82 8.01 -51.93 -0.42 0.41 16 42 H 0.10 2.08 6.58 -51.93 -0.34 1.74 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.12 2.74 7.89 -52.49 -0.41 2.32 16 46 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 47 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 48 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 49 H 0.11 2.11 7.96 -52.49 -0.42 1.69 16 50 H 0.06 0.83 8.04 -51.93 -0.42 0.41 16 51 H 0.07 1.22 8.04 -51.93 -0.42 0.80 16 LS Contribution 412.10 15.07 6.21 6.21 Total: -1.00 -31.81 412.10 -8.88 -40.68 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -8.66 Total: 5.94 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -1.46 Total: -8.93 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.21 Total: -36.32 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.75 Total: -23.39 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.43 Total: 15.81 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -31.81 -8.88 -40.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354698651.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.496 kcal (2) G-P(sol) polarization free energy of solvation -31.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds