Wall clock time and date at job start Wed Apr 1 2020 05:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42900 * 114.00155 * 2 1 4 4 C 1.53002 * 109.47406 * 180.02562 * 3 2 1 5 5 O 1.42898 * 109.46850 * 65.00101 * 4 3 2 6 6 C 1.42906 * 113.99620 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.46842 * 180.02562 * 6 5 4 8 8 H 1.09005 * 110.88529 * 302.57611 * 7 6 5 9 9 C 1.55160 * 111.00539 * 66.45219 * 7 6 5 10 10 C 1.54324 * 102.94283 * 153.57848 * 9 7 6 11 11 N 1.47027 * 107.26796 * 337.80601 * 10 9 7 12 12 C 1.34775 * 125.64666 * 178.96557 * 11 10 9 13 13 O 1.21287 * 120.00061 * 179.97438 * 12 11 10 14 14 C 1.50707 * 120.00028 * 359.97243 * 12 11 10 15 15 H 1.08998 * 109.46819 * 60.00069 * 14 12 11 16 16 C 1.50701 * 109.46880 * 300.00261 * 14 12 11 17 17 H 1.07999 * 120.00286 * 334.67192 * 16 14 12 18 18 C 1.37874 * 119.99504 * 154.67606 * 16 14 12 19 19 N 1.31516 * 120.00018 * 183.50534 * 18 16 14 20 20 Si 1.86798 * 120.00293 * 3.50598 * 18 16 14 21 21 H 1.48503 * 109.47456 * 84.82179 * 20 18 16 22 22 H 1.48503 * 109.47408 * 204.82224 * 20 18 16 23 23 H 1.48497 * 109.47166 * 324.82192 * 20 18 16 24 24 C 1.50696 * 109.46869 * 180.02562 * 14 12 11 25 25 C 1.38237 * 120.00543 * 66.25878 * 24 14 12 26 26 C 1.38233 * 120.00371 * 179.74102 * 25 24 14 27 27 C 1.38236 * 119.99585 * 0.53019 * 26 25 24 28 28 C 1.38234 * 120.00328 * 359.74128 * 27 26 25 29 29 C 1.38235 * 119.99919 * 359.97438 * 28 27 26 30 30 C 1.47421 * 108.70617 * 358.94383 * 11 10 9 31 31 H 1.09009 * 109.47195 * 299.99888 * 1 2 3 32 32 H 1.09004 * 109.47607 * 59.99495 * 1 2 3 33 33 H 1.08996 * 109.47416 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47128 * 60.00411 * 3 2 1 35 35 H 1.08996 * 109.47525 * 300.00660 * 3 2 1 36 36 H 1.08997 * 109.47359 * 185.00136 * 4 3 2 37 37 H 1.09006 * 109.46906 * 305.00294 * 4 3 2 38 38 H 1.08997 * 109.46813 * 299.99730 * 6 5 4 39 39 H 1.08996 * 109.47077 * 60.00510 * 6 5 4 40 40 H 1.09004 * 110.71892 * 271.93676 * 9 7 6 41 41 H 1.09000 * 110.71451 * 35.03611 * 9 7 6 42 42 H 1.08995 * 109.88825 * 97.22049 * 10 9 7 43 43 H 1.08998 * 109.88302 * 218.23785 * 10 9 7 44 44 H 0.97000 * 120.00413 * 179.97438 * 19 18 16 45 45 H 1.07999 * 119.99295 * 359.97438 * 25 24 14 46 46 H 1.07997 * 120.00446 * 180.29403 * 26 25 24 47 47 H 1.08003 * 119.99989 * 179.77114 * 27 26 25 48 48 H 1.07999 * 119.99902 * 179.97438 * 28 27 26 49 49 H 1.07998 * 120.00084 * 179.97438 * 29 28 27 50 50 H 1.09002 * 110.36666 * 265.29331 * 30 11 10 51 51 H 1.09000 * 110.36721 * 142.96838 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9648 0.5797 -1.2220 6 6 5.3811 0.4192 -1.3246 7 6 5.7245 -0.2338 -2.6650 8 1 5.2172 -1.1927 -2.7713 9 6 5.3824 0.7105 -3.8476 10 6 6.3595 0.2514 -4.9503 11 7 7.4792 -0.4307 -4.2850 12 6 8.5345 -0.9955 -4.9044 13 8 9.4041 -1.5333 -4.2520 14 6 8.6341 -0.9590 -6.4077 15 1 8.6541 0.0772 -6.7454 16 6 7.4421 -1.6597 -7.0072 17 1 6.9203 -2.4175 -6.4417 18 6 7.0179 -1.3333 -8.2779 19 7 5.9373 -1.8946 -8.7747 20 14 7.9779 -0.0941 -9.2937 21 1 9.0919 -0.7838 -9.9927 22 1 7.0761 0.5299 -10.2951 23 1 8.5289 0.9569 -8.4010 24 6 9.8974 -1.6548 -6.8445 25 6 10.0425 -3.0147 -6.6434 26 6 11.1992 -3.6539 -7.0489 27 6 12.2153 -2.9312 -7.6456 28 6 12.0726 -1.5702 -7.8417 29 6 10.9135 -0.9321 -7.4415 30 6 7.2566 -0.3941 -2.8282 31 1 -0.3634 0.5139 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.6886 1.8464 0.8900 35 1 1.6885 1.8464 -0.8899 36 1 3.9785 2.1765 0.0889 37 1 3.8514 0.5681 0.8410 38 1 5.8627 1.3950 -1.2623 39 1 5.7349 -0.2134 -0.5106 40 1 4.3491 0.5714 -4.1657 41 1 5.5642 1.7503 -3.5758 42 1 5.8560 -0.4375 -5.6285 43 1 6.7256 1.1157 -5.5045 44 1 5.6385 -1.6648 -9.6685 45 1 9.2505 -3.5784 -6.1729 46 1 11.3106 -4.7172 -6.8961 47 1 13.1205 -3.4298 -7.9591 48 1 12.8666 -1.0056 -8.3075 49 1 10.8021 0.1312 -7.5943 50 1 7.7761 0.4562 -2.3863 51 1 7.5917 -1.3245 -2.3697 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354698651.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:01 Heat of formation + Delta-G solvation = -119.944754 kcal Electronic energy + Delta-G solvation = -30693.200707 eV Core-core repulsion = 26556.859981 eV Total energy + Delta-G solvation = -4136.340726 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.27259 -39.96963 -39.34053 -38.54367 -37.65093 -35.57535 -33.53996 -33.10377 -31.65135 -31.09662 -30.30047 -29.43974 -27.22579 -26.60553 -25.29621 -23.88818 -23.43224 -23.34263 -22.27843 -21.32954 -20.05567 -19.14035 -18.04327 -17.99496 -17.75925 -17.54433 -17.05757 -16.44288 -16.38467 -16.23160 -16.12702 -16.06230 -15.79623 -15.21162 -14.94375 -14.61931 -14.47926 -14.43765 -14.17808 -13.92301 -13.74399 -13.60666 -13.53157 -13.36107 -13.14500 -12.93384 -12.78227 -12.67847 -12.38089 -12.13554 -12.07382 -12.00923 -11.90831 -11.71856 -11.61635 -11.56290 -11.42828 -10.86652 -10.62292 -10.57198 -10.49496 -9.66399 -9.51204 -9.39122 -8.33292 -6.38878 0.61713 0.68086 1.30922 1.38680 1.41971 1.78604 2.17683 2.30196 2.69264 2.90844 2.97391 3.11566 3.58575 3.69442 3.89624 4.07226 4.13286 4.19163 4.20976 4.26886 4.31507 4.33018 4.37066 4.39499 4.42357 4.46747 4.53087 4.56113 4.59018 4.61665 4.63568 4.64426 4.79424 4.81419 4.84236 4.87756 4.89494 4.98777 5.06526 5.16784 5.18577 5.30062 5.34744 5.39928 5.57540 5.67716 5.72188 5.94062 6.19644 6.21320 6.28318 6.35849 6.56506 6.63775 7.23534 7.34113 8.80988 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.015148 B = 0.002475 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.025305 B =11309.671782 C =12286.970154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.058 3.942 4 C 0.057 3.943 5 O -0.401 6.401 6 C 0.083 3.917 7 C -0.092 4.092 8 H 0.071 0.929 9 C -0.106 4.106 10 C 0.101 3.899 11 N -0.614 5.614 12 C 0.544 3.456 13 O -0.588 6.588 14 C 0.030 3.970 15 H 0.073 0.927 16 C -0.489 4.489 17 H 0.035 0.965 18 C 0.043 3.957 19 N -0.928 5.928 20 Si 0.915 3.085 21 H -0.269 1.269 22 H -0.283 1.283 23 H -0.237 1.237 24 C -0.059 4.059 25 C -0.102 4.102 26 C -0.133 4.133 27 C -0.135 4.135 28 C -0.125 4.125 29 C -0.154 4.154 30 C 0.114 3.886 31 H 0.058 0.942 32 H 0.044 0.956 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.090 0.910 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.082 0.918 41 H 0.097 0.903 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.269 0.731 45 H 0.088 0.912 46 H 0.135 0.865 47 H 0.152 0.848 48 H 0.149 0.851 49 H 0.120 0.880 50 H 0.086 0.914 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.777 10.614 14.513 18.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C -0.019 4.019 4 C -0.019 4.019 5 O -0.321 6.321 6 C 0.006 3.994 7 C -0.111 4.111 8 H 0.089 0.911 9 C -0.144 4.144 10 C -0.022 4.022 11 N -0.347 5.347 12 C 0.335 3.665 13 O -0.469 6.469 14 C 0.008 3.992 15 H 0.090 0.910 16 C -0.527 4.527 17 H 0.054 0.946 18 C -0.158 4.158 19 N -0.566 5.566 20 Si 0.739 3.261 21 H -0.194 1.194 22 H -0.209 1.209 23 H -0.161 1.161 24 C -0.060 4.060 25 C -0.121 4.121 26 C -0.151 4.151 27 C -0.153 4.153 28 C -0.143 4.143 29 C -0.172 4.172 30 C -0.008 4.008 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.075 0.925 36 H 0.108 0.892 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.115 0.885 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.106 0.894 46 H 0.153 0.847 47 H 0.169 0.831 48 H 0.167 0.833 49 H 0.138 0.862 50 H 0.104 0.896 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.423 10.076 14.514 17.834 hybrid contribution -0.300 0.147 -0.659 0.739 sum -2.723 10.222 13.855 17.432 Atomic orbital electron populations 1.22886 0.79773 1.03486 1.00854 1.87926 1.21269 1.28986 1.95600 1.22752 0.92266 0.84855 1.01985 1.22736 0.93690 0.98672 0.86815 1.87933 1.22372 1.82670 1.39137 1.22299 0.81530 1.00227 0.95324 1.22185 0.93824 0.99824 0.95308 0.91086 1.22593 0.98881 0.99899 0.93034 1.22174 0.87130 0.96628 0.96240 1.48321 1.22229 1.56470 1.07636 1.20682 0.79435 0.75765 0.90590 1.90563 1.41149 1.46739 1.68447 1.18406 0.93242 0.98194 0.89322 0.90975 1.20279 1.10256 1.21597 1.00556 0.94639 1.25531 0.94848 0.97442 0.97953 1.69981 1.24186 1.44816 1.17661 0.86218 0.79328 0.80887 0.79665 1.19421 1.20887 1.16098 1.20127 0.94495 0.94699 0.96712 1.20827 0.97387 0.94612 0.99252 1.21365 0.93682 1.00601 0.99454 1.21362 0.99485 0.94347 1.00102 1.21372 0.97348 0.95431 1.00110 1.21245 0.94469 0.99884 1.01574 1.22150 0.95345 1.02158 0.81176 0.92373 0.93685 0.89381 0.89253 0.92514 0.89195 0.92406 0.90699 0.92190 0.89964 0.88498 0.91979 0.91503 0.92128 0.89376 0.84699 0.83052 0.83286 0.86183 0.89607 0.91993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.42 -9.10 10.67 -144.34 -1.54 -10.64 16 3 C 0.06 0.90 6.32 71.98 0.45 1.35 16 4 C 0.06 0.91 6.32 71.98 0.45 1.37 16 5 O -0.40 -9.28 10.16 -144.34 -1.47 -10.74 16 6 C 0.08 1.69 5.38 71.98 0.39 2.07 16 7 C -0.09 -2.48 3.33 -9.40 -0.03 -2.51 16 8 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 9 C -0.11 -2.88 6.28 31.78 0.20 -2.68 16 10 C 0.10 3.64 6.08 86.73 0.53 4.17 16 11 N -0.61 -24.27 3.32 -811.78 -2.70 -26.97 16 12 C 0.54 25.49 7.10 87.66 0.62 26.11 16 13 O -0.59 -29.82 15.68 -3.05 -0.05 -29.86 16 14 C 0.03 1.42 1.43 -13.03 -0.02 1.40 16 15 H 0.07 3.33 5.41 -2.39 -0.01 3.32 16 16 C -0.49 -26.55 5.98 25.60 0.15 -26.40 16 17 H 0.04 2.20 8.05 -2.91 -0.02 2.18 16 18 C 0.04 2.34 5.47 84.65 0.46 2.80 16 19 N -0.93 -54.65 13.96 21.45 0.30 -54.35 16 20 Si 0.91 41.86 26.05 68.60 1.79 43.65 16 21 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 23 H -0.24 -9.77 6.14 99.48 0.61 -9.16 16 24 C -0.06 -2.76 3.62 -19.87 -0.07 -2.83 16 25 C -0.10 -4.74 8.32 22.27 0.19 -4.56 16 26 C -0.13 -5.03 10.05 22.27 0.22 -4.81 16 27 C -0.14 -4.40 10.05 22.27 0.22 -4.18 16 28 C -0.12 -4.20 10.05 22.27 0.22 -3.97 16 29 C -0.15 -6.18 8.64 22.27 0.19 -5.98 16 30 C 0.11 3.54 6.38 86.86 0.55 4.09 16 31 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.09 1.19 8.14 -2.39 -0.02 1.18 16 34 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.07 1.18 8.11 -2.39 -0.02 1.16 16 39 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.10 2.10 8.01 -2.39 -0.02 2.08 16 42 H 0.06 2.74 6.58 -2.39 -0.02 2.72 16 43 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 45 H 0.09 4.45 7.89 -2.91 -0.02 4.43 16 46 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 47 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 48 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 49 H 0.12 4.40 7.96 -2.91 -0.02 4.38 16 50 H 0.09 2.24 8.04 -2.39 -0.02 2.23 16 51 H 0.06 2.08 8.04 -2.39 -0.02 2.06 16 Total: -1.00 -73.80 412.10 3.12 -70.68 By element: Atomic # 1 Polarization: 30.37 SS G_CDS: 0.80 Total: 31.16 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: 5.99 Total: -12.92 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -2.40 Total: -81.32 kcal Atomic # 8 Polarization: -48.19 SS G_CDS: -3.05 Total: -51.24 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 1.79 Total: 43.65 kcal Total: -73.80 3.12 -70.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354698651.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.268 kcal (2) G-P(sol) polarization free energy of solvation -73.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds