Wall clock time and date at job start Wed Apr 1 2020 05:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00208 * 2 1 4 4 C 1.53005 * 109.47438 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.46934 * 64.99685 * 4 3 2 6 6 C 1.42903 * 113.99905 * 179.97438 * 5 4 3 7 7 C 1.52993 * 109.46997 * 180.02562 * 6 5 4 8 8 H 1.09002 * 110.88709 * 51.12340 * 7 6 5 9 9 C 1.55156 * 111.04176 * 287.21714 * 7 6 5 10 10 C 1.54316 * 102.86519 * 206.21688 * 9 7 6 11 11 N 1.47017 * 107.27603 * 22.52682 * 10 9 7 12 12 C 1.34780 * 125.64383 * 180.97010 * 11 10 9 13 13 O 1.21279 * 119.99508 * 179.68721 * 12 11 10 14 14 C 1.50693 * 120.00289 * 359.68823 * 12 11 10 15 15 H 1.08994 * 109.47300 * 300.00241 * 14 12 11 16 16 C 1.50707 * 109.47068 * 60.00173 * 14 12 11 17 17 H 1.08002 * 119.99808 * 29.17994 * 16 14 12 18 18 C 1.37875 * 119.99877 * 209.17979 * 16 14 12 19 19 N 1.31517 * 119.99998 * 353.04602 * 18 16 14 20 20 Si 1.86796 * 119.99865 * 173.04388 * 18 16 14 21 21 H 1.48509 * 109.47059 * 180.02562 * 20 18 16 22 22 H 1.48494 * 109.47395 * 60.00171 * 20 18 16 23 23 H 1.48505 * 109.47111 * 299.99822 * 20 18 16 24 24 C 1.50699 * 109.47239 * 179.97438 * 14 12 11 25 25 C 1.38230 * 120.00268 * 293.49137 * 24 14 12 26 26 C 1.38241 * 120.00204 * 179.78487 * 25 24 14 27 27 C 1.38239 * 119.99519 * 0.44228 * 26 25 24 28 28 C 1.38235 * 120.00079 * 359.80751 * 27 26 25 29 29 C 1.38227 * 120.00158 * 359.97438 * 28 27 26 30 30 C 1.47421 * 108.70288 * 0.70280 * 11 10 9 31 31 H 1.09001 * 109.46930 * 59.99700 * 1 2 3 32 32 H 1.08995 * 109.47226 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.46695 * 300.00083 * 1 2 3 34 34 H 1.09006 * 109.47179 * 60.00331 * 3 2 1 35 35 H 1.09000 * 109.47203 * 299.99929 * 3 2 1 36 36 H 1.09004 * 109.46830 * 305.00407 * 4 3 2 37 37 H 1.08999 * 109.47229 * 185.00009 * 4 3 2 38 38 H 1.09002 * 109.46805 * 60.00786 * 6 5 4 39 39 H 1.08999 * 109.47188 * 300.00263 * 6 5 4 40 40 H 1.09006 * 110.71735 * 324.77839 * 9 7 6 41 41 H 1.09003 * 110.71921 * 88.04275 * 9 7 6 42 42 H 1.09000 * 109.98582 * 263.04354 * 10 9 7 43 43 H 1.09003 * 109.77106 * 141.88755 * 10 9 7 44 44 H 0.96996 * 120.00340 * 354.66863 * 19 18 16 45 45 H 1.08001 * 120.00407 * 359.97438 * 25 24 14 46 46 H 1.07996 * 120.00014 * 180.27262 * 26 25 24 47 47 H 1.07999 * 119.99552 * 179.83794 * 27 26 25 48 48 H 1.07997 * 119.99504 * 180.02562 * 28 27 26 49 49 H 1.07998 * 120.00257 * 179.97438 * 29 28 27 50 50 H 1.08997 * 110.36722 * 94.93953 * 30 11 10 51 51 H 1.09004 * 110.36739 * 217.26170 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5796 -1.2219 6 6 5.3812 0.4201 -1.3251 7 6 5.7246 -0.2331 -2.6653 8 1 5.2469 0.2966 -3.4895 9 6 5.3348 -1.7349 -2.6691 10 6 6.3065 -2.3394 -3.7044 11 7 7.4598 -1.4328 -3.8021 12 6 8.5223 -1.5984 -4.6146 13 8 9.4177 -0.7804 -4.6161 14 6 8.5978 -2.7998 -5.5211 15 1 8.5810 -3.7095 -4.9209 16 6 7.4189 -2.7956 -6.4599 17 1 6.9683 -1.8600 -6.7567 18 6 6.9156 -3.9861 -6.9398 19 7 7.5444 -5.1140 -6.6905 20 14 5.3407 -3.9971 -7.9443 21 1 5.0144 -5.3913 -8.3381 22 1 5.5248 -3.1683 -9.1626 23 1 4.2305 -3.4405 -7.1300 24 6 9.8750 -2.7475 -6.3192 25 6 10.0624 -1.7513 -7.2591 26 6 11.2359 -1.7007 -7.9881 27 6 12.2181 -2.6517 -7.7836 28 6 12.0285 -3.6509 -6.8474 29 6 10.8570 -3.6989 -6.1153 30 6 7.2584 -0.3094 -2.8690 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8901 34 1 1.6887 1.8463 0.8901 35 1 1.6887 1.8463 -0.8900 36 1 3.8515 0.5681 0.8409 37 1 3.9786 2.1765 0.0889 38 1 5.7359 -0.2120 -0.5110 39 1 5.8622 1.3963 -1.2632 40 1 5.4907 -2.1763 -1.6847 41 1 4.3017 -1.8644 -2.9917 42 1 5.8151 -2.4200 -4.6739 43 1 6.6357 -3.3234 -3.3704 44 1 8.4013 -5.1014 -6.2362 45 1 9.2934 -1.0107 -7.4217 46 1 11.3841 -0.9198 -8.7192 47 1 13.1337 -2.6137 -8.3550 48 1 12.7961 -4.3936 -6.6874 49 1 10.7087 -4.4797 -5.3841 50 1 7.7574 -0.5096 -1.9209 51 1 7.6296 0.6177 -3.3057 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354698654.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:14 Heat of formation + Delta-G solvation = -107.962468 kcal Electronic energy + Delta-G solvation = -30719.703596 eV Core-core repulsion = 26583.882461 eV Total energy + Delta-G solvation = -4135.821135 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.66910 -38.76021 -38.21161 -37.44058 -36.40178 -34.00038 -32.09380 -30.85031 -30.24500 -30.02293 -29.00650 -27.42301 -26.53558 -25.13337 -23.70931 -22.83167 -22.41919 -21.61829 -20.71131 -20.15517 -18.67294 -17.34739 -17.24139 -16.92343 -16.25341 -16.03971 -15.81341 -15.58105 -15.33939 -15.01940 -14.80588 -14.32784 -13.85649 -13.66062 -13.61322 -13.46890 -13.25447 -12.92405 -12.76099 -12.44719 -12.34319 -12.29949 -12.10874 -12.00306 -11.79829 -11.50261 -11.45297 -11.41006 -10.94039 -10.87509 -10.80188 -10.61115 -10.41565 -10.28693 -10.19762 -10.11785 -9.97389 -9.71530 -8.98218 -8.80734 -8.59205 -8.02786 -7.92101 -7.64713 -6.53883 -4.28476 2.28592 2.33407 3.32831 3.36110 3.38142 3.48542 3.56081 3.64115 3.84119 4.40839 4.65410 4.69657 4.77755 4.83663 4.88518 4.96591 5.02122 5.07202 5.15361 5.17777 5.22718 5.32455 5.39315 5.42072 5.45047 5.59000 5.65920 5.66470 5.70273 5.78259 5.81837 5.93927 6.05871 6.11314 6.24273 6.33504 6.39833 6.42899 6.48343 6.65699 6.68615 6.84018 6.87350 6.98523 7.04525 7.09820 7.29417 7.36376 7.60425 7.83946 7.95660 8.21795 8.28676 8.62621 9.11991 9.41048 10.83592 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.013252 B = 0.002603 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.400273 B =10753.788509 C =12245.329387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.063 3.937 4 C 0.063 3.937 5 O -0.376 6.376 6 C 0.076 3.924 7 C -0.100 4.100 8 H 0.092 0.908 9 C -0.122 4.122 10 C 0.107 3.893 11 N -0.613 5.613 12 C 0.548 3.452 13 O -0.566 6.566 14 C 0.049 3.951 15 H 0.065 0.935 16 C -0.586 4.586 17 H 0.057 0.943 18 C 0.034 3.966 19 N -0.893 5.893 20 Si 1.062 2.938 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.283 1.283 24 C -0.021 4.021 25 C -0.078 4.078 26 C -0.132 4.132 27 C -0.146 4.146 28 C -0.128 4.128 29 C -0.128 4.128 30 C 0.116 3.884 31 H 0.042 0.958 32 H 0.086 0.914 33 H 0.038 0.962 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.050 0.950 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.061 0.939 44 H 0.274 0.726 45 H 0.112 0.888 46 H 0.108 0.892 47 H 0.107 0.893 48 H 0.108 0.892 49 H 0.109 0.891 50 H 0.058 0.942 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.357 9.620 12.229 17.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C -0.014 4.014 4 C -0.014 4.014 5 O -0.295 6.295 6 C -0.001 4.001 7 C -0.119 4.119 8 H 0.110 0.890 9 C -0.160 4.160 10 C -0.015 4.015 11 N -0.347 5.347 12 C 0.339 3.661 13 O -0.445 6.445 14 C 0.027 3.973 15 H 0.083 0.917 16 C -0.624 4.624 17 H 0.075 0.925 18 C -0.173 4.173 19 N -0.527 5.527 20 Si 0.889 3.111 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.210 1.210 24 C -0.022 4.022 25 C -0.096 4.096 26 C -0.150 4.150 27 C -0.164 4.164 28 C -0.147 4.147 29 C -0.146 4.146 30 C -0.008 4.008 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.112 0.888 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.130 0.870 46 H 0.126 0.874 47 H 0.125 0.875 48 H 0.126 0.874 49 H 0.127 0.873 50 H 0.076 0.924 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.906 8.775 11.281 16.840 hybrid contribution 1.036 1.323 0.920 1.916 sum -7.870 10.098 12.202 17.686 Atomic orbital electron populations 1.22749 0.81110 1.02945 0.99753 1.87983 1.19543 1.27198 1.95339 1.22559 0.92506 0.85580 1.00733 1.22486 0.93276 0.97480 0.88121 1.87965 1.22106 1.81941 1.37453 1.22394 0.81368 0.99156 0.97200 1.22297 0.95584 0.97076 0.96985 0.88958 1.22706 1.00087 0.93846 0.99370 1.22102 0.86216 0.92622 1.00603 1.48268 1.21338 1.24519 1.40581 1.21110 0.78820 0.88125 0.77995 1.90588 1.38519 1.46709 1.68687 1.18120 0.93147 0.92565 0.93419 0.91706 1.21484 1.14144 0.95782 1.30945 0.92520 1.25800 1.03114 0.91812 0.96605 1.70775 1.16086 1.28096 1.37741 0.83641 0.74886 0.76299 0.76288 1.20584 1.21250 1.20971 1.20136 0.93787 0.92921 0.95315 1.20792 0.96082 0.97899 0.94858 1.20985 0.94716 0.99052 1.00293 1.20821 0.98959 0.96654 0.99997 1.20878 0.97462 0.98675 0.97637 1.20965 0.93786 0.99462 1.00381 1.21934 0.93651 0.91646 0.93531 0.93980 0.89504 0.94336 0.92016 0.92377 0.92504 0.91919 0.92970 0.93222 0.91286 0.89914 0.88795 0.92089 0.91454 0.87020 0.87412 0.87518 0.87392 0.87324 0.92351 0.90903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.19 10.67 -40.08 -0.43 -4.62 16 3 C 0.06 0.53 6.32 37.16 0.23 0.77 16 4 C 0.06 0.57 6.32 37.16 0.23 0.81 16 5 O -0.38 -4.59 10.27 -40.08 -0.41 -5.00 16 6 C 0.08 0.85 5.39 37.15 0.20 1.05 16 7 C -0.10 -1.36 3.29 -88.47 -0.29 -1.66 16 8 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 9 C -0.12 -1.75 6.39 -24.90 -0.16 -1.91 16 10 C 0.11 1.94 6.07 -3.07 -0.02 1.92 16 11 N -0.61 -12.06 3.32 -170.53 -0.57 -12.63 16 12 C 0.55 12.74 7.11 -10.99 -0.08 12.66 16 13 O -0.57 -14.32 15.69 5.56 0.09 -14.24 16 14 C 0.05 1.18 1.49 -94.08 -0.14 1.04 16 15 H 0.07 1.63 6.70 -51.93 -0.35 1.29 16 16 C -0.59 -14.82 5.38 -34.44 -0.19 -15.00 16 17 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 18 C 0.03 0.88 5.45 -17.82 -0.10 0.78 16 19 N -0.89 -24.65 13.55 55.43 0.75 -23.90 16 20 Si 1.06 23.38 29.91 -169.99 -5.08 18.29 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 24 C -0.02 -0.49 4.12 -104.62 -0.43 -0.92 16 25 C -0.08 -1.81 8.33 -39.58 -0.33 -2.14 16 26 C -0.13 -2.68 10.05 -39.58 -0.40 -3.07 16 27 C -0.15 -2.77 10.05 -39.58 -0.40 -3.16 16 28 C -0.13 -2.52 10.05 -39.59 -0.40 -2.91 16 29 C -0.13 -2.82 9.39 -39.58 -0.37 -3.19 16 30 C 0.12 1.84 6.38 -2.53 -0.02 1.83 16 31 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.04 0.22 8.14 -51.92 -0.42 -0.20 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.05 0.55 7.97 -51.93 -0.41 0.13 16 39 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.91 7.92 -51.93 -0.41 0.50 16 41 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.09 1.89 6.58 -51.93 -0.34 1.55 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.27 7.54 6.47 -40.82 -0.26 7.28 16 45 H 0.11 2.65 7.88 -52.49 -0.41 2.24 16 46 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 47 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 48 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 49 H 0.11 2.27 7.96 -52.49 -0.42 1.85 16 50 H 0.06 0.86 8.04 -51.93 -0.42 0.44 16 51 H 0.07 1.20 8.04 -51.93 -0.42 0.79 16 LS Contribution 416.41 15.07 6.28 6.28 Total: -1.00 -31.79 416.41 -9.47 -41.27 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -8.57 Total: 6.33 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -1.53 Total: -11.78 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.18 Total: -36.53 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.75 Total: -23.86 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -5.08 Total: 18.29 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -31.79 -9.47 -41.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354698654.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.693 kcal (2) G-P(sol) polarization free energy of solvation -31.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds