Wall clock time and date at job start Wed Apr 1 2020 05:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00208 * 2 1 4 4 C 1.53005 * 109.47438 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.46934 * 64.99685 * 4 3 2 6 6 C 1.42903 * 113.99905 * 179.97438 * 5 4 3 7 7 C 1.52993 * 109.46997 * 180.02562 * 6 5 4 8 8 H 1.09002 * 110.88709 * 51.12340 * 7 6 5 9 9 C 1.55156 * 111.04176 * 287.21714 * 7 6 5 10 10 C 1.54316 * 102.86519 * 206.21688 * 9 7 6 11 11 N 1.47017 * 107.27603 * 22.52682 * 10 9 7 12 12 C 1.34780 * 125.64383 * 180.97010 * 11 10 9 13 13 O 1.21279 * 119.99508 * 179.68721 * 12 11 10 14 14 C 1.50693 * 120.00289 * 359.68823 * 12 11 10 15 15 H 1.08994 * 109.47300 * 300.00241 * 14 12 11 16 16 C 1.50707 * 109.47068 * 60.00173 * 14 12 11 17 17 H 1.08002 * 119.99808 * 29.17994 * 16 14 12 18 18 C 1.37875 * 119.99877 * 209.17979 * 16 14 12 19 19 N 1.31517 * 119.99998 * 353.04602 * 18 16 14 20 20 Si 1.86796 * 119.99865 * 173.04388 * 18 16 14 21 21 H 1.48509 * 109.47059 * 180.02562 * 20 18 16 22 22 H 1.48494 * 109.47395 * 60.00171 * 20 18 16 23 23 H 1.48505 * 109.47111 * 299.99822 * 20 18 16 24 24 C 1.50699 * 109.47239 * 179.97438 * 14 12 11 25 25 C 1.38230 * 120.00268 * 293.49137 * 24 14 12 26 26 C 1.38241 * 120.00204 * 179.78487 * 25 24 14 27 27 C 1.38239 * 119.99519 * 0.44228 * 26 25 24 28 28 C 1.38235 * 120.00079 * 359.80751 * 27 26 25 29 29 C 1.38227 * 120.00158 * 359.97438 * 28 27 26 30 30 C 1.47421 * 108.70288 * 0.70280 * 11 10 9 31 31 H 1.09001 * 109.46930 * 59.99700 * 1 2 3 32 32 H 1.08995 * 109.47226 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.46695 * 300.00083 * 1 2 3 34 34 H 1.09006 * 109.47179 * 60.00331 * 3 2 1 35 35 H 1.09000 * 109.47203 * 299.99929 * 3 2 1 36 36 H 1.09004 * 109.46830 * 305.00407 * 4 3 2 37 37 H 1.08999 * 109.47229 * 185.00009 * 4 3 2 38 38 H 1.09002 * 109.46805 * 60.00786 * 6 5 4 39 39 H 1.08999 * 109.47188 * 300.00263 * 6 5 4 40 40 H 1.09006 * 110.71735 * 324.77839 * 9 7 6 41 41 H 1.09003 * 110.71921 * 88.04275 * 9 7 6 42 42 H 1.09000 * 109.98582 * 263.04354 * 10 9 7 43 43 H 1.09003 * 109.77106 * 141.88755 * 10 9 7 44 44 H 0.96996 * 120.00340 * 354.66863 * 19 18 16 45 45 H 1.08001 * 120.00407 * 359.97438 * 25 24 14 46 46 H 1.07996 * 120.00014 * 180.27262 * 26 25 24 47 47 H 1.07999 * 119.99552 * 179.83794 * 27 26 25 48 48 H 1.07997 * 119.99504 * 180.02562 * 28 27 26 49 49 H 1.07998 * 120.00257 * 179.97438 * 29 28 27 50 50 H 1.08997 * 110.36722 * 94.93953 * 30 11 10 51 51 H 1.09004 * 110.36739 * 217.26170 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5796 -1.2219 6 6 5.3812 0.4201 -1.3251 7 6 5.7246 -0.2331 -2.6653 8 1 5.2469 0.2966 -3.4895 9 6 5.3348 -1.7349 -2.6691 10 6 6.3065 -2.3394 -3.7044 11 7 7.4598 -1.4328 -3.8021 12 6 8.5223 -1.5984 -4.6146 13 8 9.4177 -0.7804 -4.6161 14 6 8.5978 -2.7998 -5.5211 15 1 8.5810 -3.7095 -4.9209 16 6 7.4189 -2.7956 -6.4599 17 1 6.9683 -1.8600 -6.7567 18 6 6.9156 -3.9861 -6.9398 19 7 7.5444 -5.1140 -6.6905 20 14 5.3407 -3.9971 -7.9443 21 1 5.0144 -5.3913 -8.3381 22 1 5.5248 -3.1683 -9.1626 23 1 4.2305 -3.4405 -7.1300 24 6 9.8750 -2.7475 -6.3192 25 6 10.0624 -1.7513 -7.2591 26 6 11.2359 -1.7007 -7.9881 27 6 12.2181 -2.6517 -7.7836 28 6 12.0285 -3.6509 -6.8474 29 6 10.8570 -3.6989 -6.1153 30 6 7.2584 -0.3094 -2.8690 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8901 34 1 1.6887 1.8463 0.8901 35 1 1.6887 1.8463 -0.8900 36 1 3.8515 0.5681 0.8409 37 1 3.9786 2.1765 0.0889 38 1 5.7359 -0.2120 -0.5110 39 1 5.8622 1.3963 -1.2632 40 1 5.4907 -2.1763 -1.6847 41 1 4.3017 -1.8644 -2.9917 42 1 5.8151 -2.4200 -4.6739 43 1 6.6357 -3.3234 -3.3704 44 1 8.4013 -5.1014 -6.2362 45 1 9.2934 -1.0107 -7.4217 46 1 11.3841 -0.9198 -8.7192 47 1 13.1337 -2.6137 -8.3550 48 1 12.7961 -4.3936 -6.6874 49 1 10.7087 -4.4797 -5.3841 50 1 7.7574 -0.5096 -1.9209 51 1 7.6296 0.6177 -3.3057 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354698654.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:13 Heat of formation + Delta-G solvation = -126.341946 kcal Electronic energy + Delta-G solvation = -30720.500590 eV Core-core repulsion = 26583.882461 eV Total energy + Delta-G solvation = -4136.618129 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.29250 -39.97750 -39.34975 -38.55649 -37.67944 -35.91309 -33.40678 -32.63625 -31.66301 -31.11862 -30.32157 -29.07052 -27.18862 -26.45677 -25.49853 -23.94160 -23.44293 -23.27097 -22.31101 -21.36727 -20.38386 -19.16205 -18.11685 -17.75774 -17.59882 -17.58313 -17.12462 -16.64489 -16.30913 -16.15331 -16.09625 -15.81117 -15.66688 -15.27267 -15.07089 -14.58641 -14.46608 -14.43306 -14.08040 -13.86571 -13.83064 -13.76104 -13.52063 -13.20240 -13.07787 -12.87520 -12.70134 -12.58497 -12.26870 -12.25329 -12.03478 -11.96312 -11.91147 -11.80677 -11.69501 -11.59874 -10.92901 -10.67426 -10.61543 -10.55820 -10.51200 -9.68082 -9.55911 -9.36124 -8.61865 -6.35527 0.63036 0.68599 1.55083 1.60105 1.76486 1.80229 2.14145 2.55970 2.67286 2.90435 3.06273 3.19431 3.53344 3.65536 3.88681 4.06983 4.11618 4.19902 4.20372 4.24572 4.30208 4.32664 4.36269 4.37821 4.39807 4.47588 4.52903 4.53747 4.57853 4.61330 4.62806 4.64190 4.77116 4.81474 4.82493 4.88183 4.88897 4.96457 5.02092 5.12554 5.22785 5.29556 5.30709 5.53677 5.67256 5.70985 5.72872 6.03428 6.13821 6.20246 6.28893 6.34088 6.48838 6.61907 7.31233 7.39973 8.75992 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.013252 B = 0.002603 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.400273 B =10753.788509 C =12245.329387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.058 3.942 4 C 0.057 3.943 5 O -0.400 6.400 6 C 0.082 3.918 7 C -0.088 4.088 8 H 0.082 0.918 9 C -0.109 4.109 10 C 0.107 3.893 11 N -0.613 5.613 12 C 0.541 3.459 13 O -0.593 6.593 14 C 0.051 3.949 15 H 0.045 0.955 16 C -0.578 4.578 17 H 0.042 0.958 18 C -0.004 4.004 19 N -0.919 5.919 20 Si 1.099 2.901 21 H -0.284 1.284 22 H -0.280 1.280 23 H -0.262 1.262 24 C -0.050 4.050 25 C -0.107 4.107 26 C -0.133 4.133 27 C -0.139 4.139 28 C -0.125 4.125 29 C -0.150 4.150 30 C 0.112 3.888 31 H 0.044 0.956 32 H 0.089 0.911 33 H 0.056 0.944 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.087 0.913 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.051 0.949 44 H 0.264 0.736 45 H 0.091 0.909 46 H 0.138 0.862 47 H 0.151 0.849 48 H 0.144 0.856 49 H 0.107 0.893 50 H 0.077 0.923 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.398 10.705 12.920 18.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C -0.018 4.018 4 C -0.019 4.019 5 O -0.320 6.320 6 C 0.005 3.995 7 C -0.107 4.107 8 H 0.101 0.899 9 C -0.147 4.147 10 C -0.016 4.016 11 N -0.346 5.346 12 C 0.332 3.668 13 O -0.474 6.474 14 C 0.030 3.970 15 H 0.062 0.938 16 C -0.615 4.615 17 H 0.060 0.940 18 C -0.205 4.205 19 N -0.554 5.554 20 Si 0.922 3.078 21 H -0.209 1.209 22 H -0.206 1.206 23 H -0.187 1.187 24 C -0.051 4.051 25 C -0.125 4.125 26 C -0.151 4.151 27 C -0.157 4.157 28 C -0.143 4.143 29 C -0.168 4.168 30 C -0.010 4.010 31 H 0.063 0.937 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.087 0.913 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.109 0.891 46 H 0.156 0.844 47 H 0.169 0.831 48 H 0.162 0.838 49 H 0.125 0.875 50 H 0.095 0.905 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.980 9.883 12.009 17.959 hybrid contribution 1.097 1.030 0.738 1.676 sum -7.883 10.913 12.748 18.540 Atomic orbital electron populations 1.22889 0.79772 1.03545 1.00795 1.87928 1.21235 1.28772 1.95587 1.22730 0.92174 0.84965 1.01909 1.22734 0.93754 0.98565 0.86891 1.87922 1.22255 1.82602 1.39225 1.22300 0.81549 1.00099 0.95515 1.22177 0.93381 0.96598 0.98593 0.89917 1.22641 0.99028 0.94184 0.98834 1.22107 0.86287 0.92493 1.00672 1.48315 1.20547 1.25730 1.40009 1.20943 0.79567 0.87716 0.78575 1.90545 1.39741 1.47378 1.69785 1.18011 0.93534 0.92139 0.93303 0.93760 1.21472 1.14355 0.95023 1.30659 0.93973 1.26904 1.05168 0.91434 0.97024 1.70865 1.16263 1.28822 1.39488 0.83161 0.72796 0.76227 0.75660 1.20896 1.20568 1.18712 1.20204 0.94373 0.94337 0.96190 1.20803 0.97376 0.97970 0.96385 1.21360 0.93667 1.00072 0.99953 1.21324 0.99908 0.95150 0.99312 1.21320 0.96982 0.99414 0.96583 1.21147 0.94859 0.99320 1.01490 1.22155 0.95749 0.89891 0.93194 0.93684 0.89250 0.92507 0.89312 0.92628 0.92186 0.89536 0.91761 0.91378 0.89443 0.89349 0.91254 0.93067 0.92539 0.89054 0.84420 0.83092 0.83827 0.87468 0.90460 0.91601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.60 16 2 O -0.42 -8.56 10.67 -144.34 -1.54 -10.10 16 3 C 0.06 0.88 6.32 71.98 0.45 1.33 16 4 C 0.06 0.89 6.32 71.98 0.45 1.34 16 5 O -0.40 -8.98 10.27 -144.34 -1.48 -10.47 16 6 C 0.08 1.65 5.39 71.98 0.39 2.04 16 7 C -0.09 -2.31 3.29 -9.40 -0.03 -2.34 16 8 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 9 C -0.11 -3.04 6.39 31.78 0.20 -2.84 16 10 C 0.11 3.98 6.07 86.73 0.53 4.51 16 11 N -0.61 -24.92 3.32 -811.83 -2.70 -27.62 16 12 C 0.54 26.36 7.11 87.65 0.62 26.98 16 13 O -0.59 -31.19 15.69 -3.03 -0.05 -31.24 16 14 C 0.05 2.62 1.49 -13.03 -0.02 2.61 16 15 H 0.04 2.40 6.70 -2.39 -0.02 2.38 16 16 C -0.58 -30.59 5.38 25.60 0.14 -30.45 16 17 H 0.04 2.30 7.82 -2.91 -0.02 2.28 16 18 C 0.00 -0.19 5.45 84.65 0.46 0.27 16 19 N -0.92 -52.51 13.55 21.45 0.29 -52.22 16 20 Si 1.10 47.87 29.91 68.60 2.05 49.92 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 24 C -0.05 -2.49 4.12 -19.87 -0.08 -2.57 16 25 C -0.11 -5.10 8.33 22.27 0.19 -4.92 16 26 C -0.13 -5.20 10.05 22.27 0.22 -4.98 16 27 C -0.14 -4.87 10.05 22.27 0.22 -4.65 16 28 C -0.13 -4.68 10.05 22.27 0.22 -4.46 16 29 C -0.15 -6.75 9.39 22.27 0.21 -6.54 16 30 C 0.11 3.54 6.38 86.86 0.55 4.09 16 31 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 34 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 35 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 37 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.06 1.15 7.97 -2.39 -0.02 1.13 16 39 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.09 2.15 7.92 -2.38 -0.02 2.13 16 41 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 42 H 0.07 2.92 6.58 -2.39 -0.02 2.90 16 43 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.26 15.26 6.47 -92.71 -0.60 14.66 16 45 H 0.09 4.58 7.88 -2.91 -0.02 4.56 16 46 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 47 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 48 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 49 H 0.11 4.68 7.96 -2.91 -0.02 4.66 16 50 H 0.08 2.17 8.04 -2.39 -0.02 2.15 16 51 H 0.07 2.18 8.04 -2.38 -0.02 2.16 16 Total: -1.00 -71.94 416.41 3.62 -68.32 By element: Atomic # 1 Polarization: 31.32 SS G_CDS: 1.06 Total: 32.38 kcal Atomic # 6 Polarization: -24.97 SS G_CDS: 5.98 Total: -18.98 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -2.41 Total: -79.83 kcal Atomic # 8 Polarization: -48.74 SS G_CDS: -3.07 Total: -51.81 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 2.05 Total: 49.92 kcal Total: -71.94 3.62 -68.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354698654.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.020 kcal (2) G-P(sol) polarization free energy of solvation -71.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds