Wall clock time and date at job start Wed Apr 1 2020 05:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99823 * 2 1 4 4 C 1.53002 * 109.46909 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.54426 * 300.00012 * 4 3 2 6 6 N 1.46500 * 109.47125 * 59.82342 * 5 4 3 7 7 C 1.34772 * 120.00095 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00065 * 0.02562 * 7 6 5 9 9 C 1.50702 * 120.00392 * 180.02562 * 7 6 5 10 10 H 1.08998 * 109.46759 * 59.99758 * 9 7 6 11 11 C 1.50699 * 109.46777 * 300.00041 * 9 7 6 12 12 H 1.07996 * 120.00387 * 334.75664 * 11 9 7 13 13 C 1.37881 * 120.00203 * 154.75750 * 11 9 7 14 14 N 1.31514 * 119.99680 * 4.13082 * 13 11 9 15 15 Si 1.86799 * 120.00368 * 184.12873 * 13 11 9 16 16 H 1.48498 * 109.46983 * 180.02562 * 15 13 11 17 17 H 1.48502 * 109.47183 * 300.00296 * 15 13 11 18 18 H 1.48501 * 109.46685 * 60.00258 * 15 13 11 19 19 C 1.50697 * 109.47452 * 180.02562 * 9 7 6 20 20 C 1.38230 * 120.00184 * 66.40639 * 19 9 7 21 21 C 1.38235 * 119.99864 * 179.79229 * 20 19 9 22 22 C 1.38236 * 120.00207 * 0.43750 * 21 20 19 23 23 C 1.38239 * 119.99881 * 359.81580 * 22 21 20 24 24 C 1.38232 * 119.99735 * 359.97438 * 23 22 21 25 25 C 1.53180 * 109.61878 * 60.22203 * 4 3 2 26 26 C 1.53092 * 109.16388 * 176.88895 * 25 4 3 27 27 O 1.42905 * 109.41579 * 302.39066 * 26 25 4 28 28 C 1.42904 * 114.09632 * 61.16039 * 27 26 25 29 29 C 1.53101 * 109.41465 * 298.83922 * 28 27 26 30 30 H 1.09005 * 109.46886 * 299.99683 * 1 2 3 31 31 H 1.08993 * 109.47579 * 59.99715 * 1 2 3 32 32 H 1.08996 * 109.47136 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47048 * 60.00749 * 3 2 1 34 34 H 1.08998 * 109.47388 * 300.00040 * 3 2 1 35 35 H 1.09008 * 109.47294 * 299.82570 * 5 4 3 36 36 H 1.08996 * 109.47073 * 179.82511 * 5 4 3 37 37 H 0.97001 * 120.00151 * 0.02562 * 6 5 4 38 38 H 0.97004 * 120.00183 * 355.70768 * 14 13 11 39 39 H 1.07997 * 120.00287 * 359.97438 * 20 19 9 40 40 H 1.08006 * 120.00022 * 180.27769 * 21 20 19 41 41 H 1.07999 * 119.99968 * 179.83790 * 22 21 20 42 42 H 1.07998 * 120.00061 * 180.02562 * 23 22 21 43 43 H 1.08005 * 120.00147 * 180.02562 * 24 23 22 44 44 H 1.08994 * 109.52105 * 296.79678 * 25 4 3 45 45 H 1.09005 * 109.51829 * 56.98361 * 25 4 3 46 46 H 1.08997 * 109.47729 * 182.41367 * 26 25 4 47 47 H 1.09000 * 109.48868 * 62.38176 * 26 25 4 48 48 H 1.09000 * 109.48410 * 178.85740 * 28 27 26 49 49 H 1.08996 * 109.49066 * 58.82583 * 28 27 26 50 50 H 1.08995 * 109.51853 * 297.70519 * 29 28 27 51 51 H 1.09003 * 109.52027 * 177.51207 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9893 0.4254 1.2477 6 7 3.3909 -0.9118 1.2503 7 6 3.6510 -1.7645 2.2611 8 8 4.3800 -1.4246 3.1688 9 6 3.0359 -3.1403 2.2637 10 1 3.3546 -3.6823 1.3733 11 6 1.5338 -3.0189 2.2671 12 1 1.0646 -2.1319 2.6664 13 6 0.7584 -4.0403 1.7605 14 7 1.3247 -5.1537 1.3492 15 14 -1.0963 -3.8427 1.6585 16 1 -1.6942 -5.0737 1.0822 17 1 -1.6456 -3.6164 3.0195 18 1 -1.4233 -2.6810 0.7932 19 6 3.4818 -3.8877 3.4939 20 6 3.0776 -3.4623 4.7455 21 6 3.4831 -4.1505 5.8737 22 6 4.3003 -5.2587 5.7509 23 6 4.7088 -5.6810 4.4996 24 6 4.2997 -4.9954 3.3712 25 6 3.9911 0.4299 -1.2533 26 6 5.5210 0.3828 -1.2830 27 8 6.0379 1.7147 -1.2542 28 6 5.6836 2.4529 -0.0830 29 6 4.1602 2.5833 -0.0051 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.6887 1.8463 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.6713 0.9675 2.1384 36 1 5.0757 0.3373 1.2444 37 1 2.8075 -1.1836 0.5246 38 1 2.2915 -5.2330 1.3439 39 1 2.4426 -2.5941 4.8418 40 1 3.1637 -3.8208 6.8513 41 1 4.6192 -5.7948 6.6326 42 1 5.3468 -6.5471 4.4036 43 1 4.6185 -5.3255 2.3935 44 1 3.5957 -0.5855 -1.2307 45 1 3.6252 0.9446 -2.1418 46 1 5.8516 -0.1158 -2.1941 47 1 5.8847 -0.1672 -0.4151 48 1 6.1315 3.4456 -0.1296 49 1 6.0494 1.9303 0.8008 50 1 3.7978 3.1414 -0.8684 51 1 3.8858 3.1077 0.9102 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361481285.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:38 Heat of formation + Delta-G solvation = -111.628368 kcal Electronic energy + Delta-G solvation = -32798.115569 eV Core-core repulsion = 28662.135469 eV Total energy + Delta-G solvation = -4135.980100 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.46176 -38.97771 -37.81224 -37.45066 -35.16645 -33.88169 -32.67185 -31.18213 -30.78676 -29.98163 -28.22272 -27.58787 -26.08019 -25.24143 -23.74153 -23.50816 -22.67548 -21.59376 -20.86106 -19.41757 -18.87451 -17.29217 -16.60145 -16.34833 -16.11751 -15.93722 -15.80369 -15.37195 -15.22644 -14.90654 -14.71136 -14.42050 -14.08887 -13.93864 -13.75575 -13.53169 -13.39509 -12.91715 -12.66340 -12.44366 -12.42433 -12.21613 -12.09967 -12.03191 -11.58038 -11.49093 -11.43021 -11.38555 -10.89632 -10.87138 -10.77806 -10.57955 -10.30376 -10.23500 -10.17297 -10.10421 -9.50845 -9.49364 -8.92050 -8.71419 -8.54339 -8.17906 -7.98096 -7.60000 -6.49832 -4.23106 2.33065 2.38084 3.27092 3.35406 3.53033 3.61301 3.76151 3.82034 4.14401 4.42051 4.53628 4.68650 4.76550 4.87383 4.91016 5.03285 5.15489 5.21839 5.23921 5.33142 5.46172 5.51991 5.54961 5.58196 5.59755 5.66112 5.69374 5.74116 5.74994 5.80126 5.85549 5.92085 6.06022 6.08194 6.12408 6.14312 6.19184 6.37819 6.46575 6.52164 6.69184 6.93288 7.02567 7.10832 7.29656 7.33101 7.37461 7.40724 7.65957 7.88913 8.01976 8.27401 8.58136 8.68338 9.31782 9.47472 10.88979 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.010022 B = 0.004413 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2793.090888 B = 6343.316331 C = 8140.237140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.374 6.374 3 C 0.073 3.927 4 C -0.070 4.070 5 C 0.132 3.868 6 N -0.714 5.714 7 C 0.529 3.471 8 O -0.574 6.574 9 C 0.045 3.955 10 H 0.060 0.940 11 C -0.580 4.580 12 H 0.056 0.944 13 C 0.030 3.970 14 N -0.897 5.897 15 Si 1.066 2.934 16 H -0.282 1.282 17 H -0.288 1.288 18 H -0.284 1.284 19 C -0.016 4.016 20 C -0.077 4.077 21 C -0.133 4.133 22 C -0.147 4.147 23 C -0.129 4.129 24 C -0.127 4.127 25 C -0.140 4.140 26 C 0.057 3.943 27 O -0.384 6.384 28 C 0.059 3.941 29 C -0.140 4.140 30 H 0.038 0.962 31 H 0.033 0.967 32 H 0.097 0.903 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.415 0.585 38 H 0.273 0.727 39 H 0.111 0.889 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.086 0.914 45 H 0.071 0.929 46 H 0.094 0.906 47 H 0.056 0.944 48 H 0.094 0.906 49 H 0.056 0.944 50 H 0.076 0.924 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.686 12.172 -4.514 13.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.292 6.292 3 C -0.004 4.004 4 C -0.070 4.070 5 C 0.007 3.993 6 N -0.372 5.372 7 C 0.318 3.682 8 O -0.454 6.454 9 C 0.024 3.976 10 H 0.078 0.922 11 C -0.618 4.618 12 H 0.074 0.926 13 C -0.176 4.176 14 N -0.532 5.532 15 Si 0.894 3.106 16 H -0.208 1.208 17 H -0.214 1.214 18 H -0.211 1.211 19 C -0.017 4.017 20 C -0.096 4.096 21 C -0.151 4.151 22 C -0.165 4.165 23 C -0.147 4.147 24 C -0.146 4.146 25 C -0.178 4.178 26 C -0.020 4.020 27 O -0.303 6.303 28 C -0.018 4.018 29 C -0.178 4.178 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.115 0.885 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.258 0.742 38 H 0.084 0.916 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.105 0.895 45 H 0.090 0.910 46 H 0.112 0.888 47 H 0.074 0.926 48 H 0.112 0.888 49 H 0.074 0.926 50 H 0.095 0.905 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.007 11.510 -4.467 12.508 hybrid contribution 0.552 0.796 0.455 1.071 sum 2.559 12.306 -4.012 13.194 Atomic orbital electron populations 1.22832 0.80473 1.03936 0.98925 1.87711 1.20013 1.26339 1.95159 1.22511 0.92154 0.85852 0.99924 1.20904 0.94114 0.95777 0.96249 1.21202 0.97498 0.84931 0.95656 1.46149 1.50925 1.12978 1.27169 1.21244 0.78724 0.87849 0.80356 1.90571 1.39022 1.79067 1.36732 1.18120 0.97709 0.88493 0.93315 0.92173 1.21471 0.87949 1.06824 1.45548 0.92576 1.25766 1.06552 0.92088 0.93220 1.70776 1.13422 1.25100 1.43870 0.83615 0.74506 0.75877 0.76570 1.20784 1.21441 1.21120 1.20121 0.91661 0.94147 0.95745 1.20772 0.98198 0.98743 0.91845 1.20974 0.99554 0.96658 0.97964 1.20804 1.00818 0.98237 0.96688 1.20870 1.01130 0.99749 0.92958 1.20959 0.98918 0.96944 0.97746 1.22163 0.96412 1.02297 0.96913 1.22663 0.93091 0.83704 1.02497 1.87904 1.74687 1.25950 1.41750 1.22595 0.93756 0.96789 0.88665 1.22129 0.96795 0.95603 1.03288 0.94376 0.94795 0.88482 0.93266 0.93421 0.92510 0.92278 0.74239 0.91578 0.87098 0.87522 0.87607 0.87491 0.87420 0.89520 0.91026 0.88815 0.92573 0.88818 0.92591 0.90484 0.90407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.59 16 2 O -0.37 -5.63 6.81 -35.23 -0.24 -5.87 16 3 C 0.07 0.88 4.82 37.16 0.18 1.06 16 4 C -0.07 -0.84 0.51 -154.32 -0.08 -0.92 16 5 C 0.13 2.05 4.01 -4.04 -0.02 2.03 16 6 N -0.71 -13.43 4.50 -60.29 -0.27 -13.70 16 7 C 0.53 12.00 7.04 -10.99 -0.08 11.92 16 8 O -0.57 -14.26 15.43 5.56 0.09 -14.17 16 9 C 0.04 1.08 1.94 -94.08 -0.18 0.90 16 10 H 0.06 1.50 6.62 -51.93 -0.34 1.16 16 11 C -0.58 -14.60 7.45 -34.44 -0.26 -14.85 16 12 H 0.06 1.44 7.81 -52.49 -0.41 1.03 16 13 C 0.03 0.78 5.45 -17.82 -0.10 0.69 16 14 N -0.90 -24.84 13.63 55.43 0.76 -24.08 16 15 Si 1.07 23.06 29.91 -169.99 -5.08 17.98 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.28 -5.49 6.04 56.52 0.34 -5.14 16 19 C -0.02 -0.38 4.17 -104.63 -0.44 -0.81 16 20 C -0.08 -1.81 8.33 -39.59 -0.33 -2.14 16 21 C -0.13 -2.73 10.05 -39.58 -0.40 -3.13 16 22 C -0.15 -2.83 10.05 -39.58 -0.40 -3.23 16 23 C -0.13 -2.56 10.05 -39.58 -0.40 -2.96 16 24 C -0.13 -2.84 9.51 -39.58 -0.38 -3.21 16 25 C -0.14 -1.69 4.61 -26.59 -0.12 -1.81 16 26 C 0.06 0.68 6.57 37.21 0.24 0.93 16 27 O -0.38 -4.74 10.77 -35.23 -0.38 -5.12 16 28 C 0.06 0.60 6.57 37.21 0.24 0.85 16 29 C -0.14 -1.36 4.92 -26.58 -0.13 -1.49 16 30 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.10 1.50 7.08 -51.93 -0.37 1.13 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 36 H 0.06 0.94 5.01 -51.93 -0.26 0.68 16 37 H 0.42 7.80 4.58 -40.82 -0.19 7.61 16 38 H 0.27 7.52 6.48 -40.82 -0.26 7.26 16 39 H 0.11 2.65 7.88 -52.49 -0.41 2.23 16 40 H 0.11 1.87 8.06 -52.48 -0.42 1.45 16 41 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 42 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 43 H 0.11 2.27 7.96 -52.48 -0.42 1.85 16 44 H 0.09 1.18 6.55 -51.93 -0.34 0.84 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.06 0.75 6.60 -51.93 -0.34 0.40 16 48 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.06 0.61 6.61 -51.93 -0.34 0.27 16 50 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 51 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 397.12 15.07 5.98 5.98 Total: -1.00 -30.53 397.12 -8.71 -39.24 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: -8.04 Total: 14.33 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -1.52 Total: -14.59 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.48 Total: -37.78 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.53 Total: -25.16 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.08 Total: 17.98 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.53 -8.71 -39.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361481285.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.390 kcal (2) G-P(sol) polarization free energy of solvation -30.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds