Wall clock time and date at job start Wed Apr 1 2020 05:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99823 * 2 1 4 4 C 1.53002 * 109.46909 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.54426 * 300.00012 * 4 3 2 6 6 N 1.46500 * 109.47125 * 59.82342 * 5 4 3 7 7 C 1.34772 * 120.00095 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00065 * 0.02562 * 7 6 5 9 9 C 1.50702 * 120.00392 * 180.02562 * 7 6 5 10 10 H 1.08998 * 109.46759 * 59.99758 * 9 7 6 11 11 C 1.50699 * 109.46777 * 300.00041 * 9 7 6 12 12 H 1.07996 * 120.00387 * 334.75664 * 11 9 7 13 13 C 1.37881 * 120.00203 * 154.75750 * 11 9 7 14 14 N 1.31514 * 119.99680 * 4.13082 * 13 11 9 15 15 Si 1.86799 * 120.00368 * 184.12873 * 13 11 9 16 16 H 1.48498 * 109.46983 * 180.02562 * 15 13 11 17 17 H 1.48502 * 109.47183 * 300.00296 * 15 13 11 18 18 H 1.48501 * 109.46685 * 60.00258 * 15 13 11 19 19 C 1.50697 * 109.47452 * 180.02562 * 9 7 6 20 20 C 1.38230 * 120.00184 * 66.40639 * 19 9 7 21 21 C 1.38235 * 119.99864 * 179.79229 * 20 19 9 22 22 C 1.38236 * 120.00207 * 0.43750 * 21 20 19 23 23 C 1.38239 * 119.99881 * 359.81580 * 22 21 20 24 24 C 1.38232 * 119.99735 * 359.97438 * 23 22 21 25 25 C 1.53180 * 109.61878 * 60.22203 * 4 3 2 26 26 C 1.53092 * 109.16388 * 176.88895 * 25 4 3 27 27 O 1.42905 * 109.41579 * 302.39066 * 26 25 4 28 28 C 1.42904 * 114.09632 * 61.16039 * 27 26 25 29 29 C 1.53101 * 109.41465 * 298.83922 * 28 27 26 30 30 H 1.09005 * 109.46886 * 299.99683 * 1 2 3 31 31 H 1.08993 * 109.47579 * 59.99715 * 1 2 3 32 32 H 1.08996 * 109.47136 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47048 * 60.00749 * 3 2 1 34 34 H 1.08998 * 109.47388 * 300.00040 * 3 2 1 35 35 H 1.09008 * 109.47294 * 299.82570 * 5 4 3 36 36 H 1.08996 * 109.47073 * 179.82511 * 5 4 3 37 37 H 0.97001 * 120.00151 * 0.02562 * 6 5 4 38 38 H 0.97004 * 120.00183 * 355.70768 * 14 13 11 39 39 H 1.07997 * 120.00287 * 359.97438 * 20 19 9 40 40 H 1.08006 * 120.00022 * 180.27769 * 21 20 19 41 41 H 1.07999 * 119.99968 * 179.83790 * 22 21 20 42 42 H 1.07998 * 120.00061 * 180.02562 * 23 22 21 43 43 H 1.08005 * 120.00147 * 180.02562 * 24 23 22 44 44 H 1.08994 * 109.52105 * 296.79678 * 25 4 3 45 45 H 1.09005 * 109.51829 * 56.98361 * 25 4 3 46 46 H 1.08997 * 109.47729 * 182.41367 * 26 25 4 47 47 H 1.09000 * 109.48868 * 62.38176 * 26 25 4 48 48 H 1.09000 * 109.48410 * 178.85740 * 28 27 26 49 49 H 1.08996 * 109.49066 * 58.82583 * 28 27 26 50 50 H 1.08995 * 109.51853 * 297.70519 * 29 28 27 51 51 H 1.09003 * 109.52027 * 177.51207 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9893 0.4254 1.2477 6 7 3.3909 -0.9118 1.2503 7 6 3.6510 -1.7645 2.2611 8 8 4.3800 -1.4246 3.1688 9 6 3.0359 -3.1403 2.2637 10 1 3.3546 -3.6823 1.3733 11 6 1.5338 -3.0189 2.2671 12 1 1.0646 -2.1319 2.6664 13 6 0.7584 -4.0403 1.7605 14 7 1.3247 -5.1537 1.3492 15 14 -1.0963 -3.8427 1.6585 16 1 -1.6942 -5.0737 1.0822 17 1 -1.6456 -3.6164 3.0195 18 1 -1.4233 -2.6810 0.7932 19 6 3.4818 -3.8877 3.4939 20 6 3.0776 -3.4623 4.7455 21 6 3.4831 -4.1505 5.8737 22 6 4.3003 -5.2587 5.7509 23 6 4.7088 -5.6810 4.4996 24 6 4.2997 -4.9954 3.3712 25 6 3.9911 0.4299 -1.2533 26 6 5.5210 0.3828 -1.2830 27 8 6.0379 1.7147 -1.2542 28 6 5.6836 2.4529 -0.0830 29 6 4.1602 2.5833 -0.0051 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.6887 1.8463 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.6713 0.9675 2.1384 36 1 5.0757 0.3373 1.2444 37 1 2.8075 -1.1836 0.5246 38 1 2.2915 -5.2330 1.3439 39 1 2.4426 -2.5941 4.8418 40 1 3.1637 -3.8208 6.8513 41 1 4.6192 -5.7948 6.6326 42 1 5.3468 -6.5471 4.4036 43 1 4.6185 -5.3255 2.3935 44 1 3.5957 -0.5855 -1.2307 45 1 3.6252 0.9446 -2.1418 46 1 5.8516 -0.1158 -2.1941 47 1 5.8847 -0.1672 -0.4151 48 1 6.1315 3.4456 -0.1296 49 1 6.0494 1.9303 0.8008 50 1 3.7978 3.1414 -0.8684 51 1 3.8858 3.1077 0.9102 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361481285.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:37 Heat of formation + Delta-G solvation = -129.605826 kcal Electronic energy + Delta-G solvation = -32798.895130 eV Core-core repulsion = 28662.135469 eV Total energy + Delta-G solvation = -4136.759661 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.60854 -40.59895 -39.29649 -38.66929 -36.35274 -35.80349 -34.09151 -32.61507 -32.10254 -31.64214 -29.42668 -29.03430 -27.34618 -26.53518 -25.42985 -24.63875 -23.61259 -23.27176 -22.50067 -21.12637 -20.04167 -19.07217 -17.93964 -17.58069 -17.39008 -17.08077 -16.96985 -16.79928 -16.54595 -16.31267 -15.93971 -15.76264 -15.60093 -15.50881 -15.25475 -14.87560 -14.65961 -14.32384 -14.22252 -14.04823 -13.82794 -13.68358 -13.34142 -13.19674 -13.04129 -12.87334 -12.74623 -12.61926 -12.33847 -12.28705 -11.95009 -11.90124 -11.85321 -11.78738 -11.55967 -11.23044 -10.85555 -10.60527 -10.53164 -10.46241 -10.45375 -9.77821 -9.65636 -9.32988 -8.56784 -6.30047 0.65226 0.71657 1.53167 1.61259 1.80409 1.91456 2.42874 2.60720 2.85569 2.93800 3.12982 3.26289 3.51056 3.70561 3.77814 4.00458 4.06360 4.10483 4.20741 4.21111 4.28002 4.32297 4.37859 4.39521 4.44619 4.49518 4.56504 4.58856 4.64412 4.66578 4.68425 4.72039 4.78971 4.83905 4.86616 4.91134 4.91676 4.98985 5.09026 5.15300 5.20879 5.27103 5.32423 5.68484 5.71272 5.74870 5.82271 6.08363 6.19589 6.20107 6.28773 6.31832 6.59509 6.90942 7.47036 7.57208 8.82228 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.010022 B = 0.004413 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2793.090888 B = 6343.316331 C = 8140.237140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.403 6.403 3 C 0.070 3.930 4 C -0.064 4.064 5 C 0.131 3.869 6 N -0.700 5.700 7 C 0.525 3.475 8 O -0.601 6.601 9 C 0.045 3.955 10 H 0.040 0.960 11 C -0.571 4.571 12 H 0.045 0.955 13 C -0.010 4.010 14 N -0.925 5.925 15 Si 1.100 2.900 16 H -0.290 1.290 17 H -0.284 1.284 18 H -0.248 1.248 19 C -0.043 4.043 20 C -0.106 4.106 21 C -0.134 4.134 22 C -0.142 4.142 23 C -0.127 4.127 24 C -0.151 4.151 25 C -0.135 4.135 26 C 0.059 3.941 27 O -0.393 6.393 28 C 0.052 3.948 29 C -0.132 4.132 30 H 0.041 0.959 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.048 0.952 36 H 0.054 0.946 37 H 0.416 0.584 38 H 0.261 0.739 39 H 0.092 0.908 40 H 0.137 0.863 41 H 0.150 0.850 42 H 0.142 0.858 43 H 0.106 0.894 44 H 0.066 0.934 45 H 0.089 0.911 46 H 0.105 0.895 47 H 0.035 0.965 48 H 0.120 0.880 49 H 0.042 0.958 50 H 0.097 0.903 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.386 13.598 -4.428 14.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.322 6.322 3 C -0.006 4.006 4 C -0.064 4.064 5 C 0.008 3.992 6 N -0.357 5.357 7 C 0.313 3.687 8 O -0.484 6.484 9 C 0.024 3.976 10 H 0.058 0.942 11 C -0.609 4.609 12 H 0.063 0.937 13 C -0.211 4.211 14 N -0.561 5.561 15 Si 0.923 3.077 16 H -0.216 1.216 17 H -0.210 1.210 18 H -0.173 1.173 19 C -0.044 4.044 20 C -0.125 4.125 21 C -0.152 4.152 22 C -0.159 4.159 23 C -0.145 4.145 24 C -0.169 4.169 25 C -0.173 4.173 26 C -0.018 4.018 27 O -0.312 6.312 28 C -0.024 4.024 29 C -0.170 4.170 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.259 0.741 38 H 0.072 0.928 39 H 0.110 0.890 40 H 0.155 0.845 41 H 0.168 0.832 42 H 0.160 0.840 43 H 0.124 0.876 44 H 0.084 0.916 45 H 0.108 0.892 46 H 0.123 0.877 47 H 0.053 0.947 48 H 0.137 0.863 49 H 0.061 0.939 50 H 0.116 0.884 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.712 12.984 -4.408 13.818 hybrid contribution 0.750 0.369 0.481 0.965 sum 2.462 13.353 -3.927 14.134 Atomic orbital electron populations 1.22838 0.79933 1.02952 1.00560 1.87649 1.20858 1.28301 1.95418 1.22662 0.91636 0.84927 1.01396 1.20916 0.94581 0.96796 0.94108 1.21378 0.97041 0.83349 0.97480 1.46117 1.49995 1.13798 1.25761 1.21086 0.78680 0.88006 0.80934 1.90532 1.40346 1.79508 1.37975 1.18052 0.97306 0.89315 0.92964 0.94207 1.21488 0.88680 1.06111 1.44642 0.93664 1.26963 1.10055 0.91522 0.92522 1.70878 1.12802 1.26279 1.46118 0.83211 0.70259 0.76857 0.77370 1.21600 1.21008 1.17271 1.20185 0.93239 0.95164 0.95799 1.20789 0.99489 0.99257 0.92920 1.21352 0.99007 0.96576 0.98258 1.21301 0.99245 0.97458 0.97933 1.21307 1.00611 1.00127 0.92413 1.21148 0.99619 0.97205 0.98960 1.22110 0.96246 1.01361 0.97592 1.22621 0.93140 0.83847 1.02174 1.87896 1.74946 1.25763 1.42552 1.22785 0.94479 0.97568 0.87550 1.22123 0.95969 0.93908 1.04988 0.93994 0.91880 0.90761 0.92917 0.90651 0.93341 0.92832 0.74096 0.92779 0.89016 0.84517 0.83240 0.84023 0.87594 0.91574 0.89223 0.87654 0.94691 0.86252 0.93935 0.88422 0.88968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 11.01 113.37 1.25 2.12 16 2 O -0.40 -11.89 6.81 -148.98 -1.01 -12.91 16 3 C 0.07 1.57 4.82 71.98 0.35 1.92 16 4 C -0.06 -1.46 0.51 -52.06 -0.03 -1.48 16 5 C 0.13 4.15 4.01 86.38 0.35 4.50 16 6 N -0.70 -27.46 4.50 -463.06 -2.08 -29.54 16 7 C 0.52 25.04 7.04 87.66 0.62 25.66 16 8 O -0.60 -31.27 15.43 -3.04 -0.05 -31.32 16 9 C 0.04 2.28 1.94 -13.03 -0.03 2.26 16 10 H 0.04 2.15 6.62 -2.39 -0.02 2.13 16 11 C -0.57 -29.95 7.45 25.60 0.19 -29.76 16 12 H 0.05 2.42 7.81 -2.91 -0.02 2.40 16 13 C -0.01 -0.53 5.45 84.66 0.46 -0.07 16 14 N -0.92 -53.01 13.63 21.45 0.29 -52.72 16 15 Si 1.10 46.78 29.91 68.60 2.05 48.84 16 16 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 17 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 18 H -0.25 -9.03 6.04 99.48 0.60 -8.42 16 19 C -0.04 -2.14 4.17 -19.87 -0.08 -2.22 16 20 C -0.11 -5.10 8.33 22.27 0.19 -4.91 16 21 C -0.13 -5.34 10.05 22.27 0.22 -5.11 16 22 C -0.14 -5.07 10.05 22.27 0.22 -4.85 16 23 C -0.13 -4.85 10.05 22.27 0.22 -4.63 16 24 C -0.15 -6.90 9.51 22.27 0.21 -6.68 16 25 C -0.14 -3.14 4.61 30.69 0.14 -3.00 16 26 C 0.06 1.39 6.57 72.01 0.47 1.87 16 27 O -0.39 -9.12 10.77 -148.98 -1.60 -10.72 16 28 C 0.05 0.99 6.57 72.02 0.47 1.46 16 29 C -0.13 -2.22 4.92 30.69 0.15 -2.07 16 30 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.07 2.25 7.08 -2.39 -0.02 2.23 16 33 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 36 H 0.05 1.77 5.01 -2.39 -0.01 1.76 16 37 H 0.42 16.29 4.58 -92.71 -0.42 15.86 16 38 H 0.26 15.18 6.48 -92.71 -0.60 14.58 16 39 H 0.09 4.61 7.88 -2.91 -0.02 4.58 16 40 H 0.14 4.49 8.06 -2.91 -0.02 4.47 16 41 H 0.15 4.05 8.06 -2.91 -0.02 4.03 16 42 H 0.14 4.35 8.06 -2.91 -0.02 4.33 16 43 H 0.11 4.70 7.96 -2.91 -0.02 4.67 16 44 H 0.07 1.82 6.55 -2.39 -0.02 1.80 16 45 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 46 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 47 H 0.03 0.97 6.60 -2.39 -0.02 0.95 16 48 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 49 H 0.04 0.91 6.61 -2.39 -0.02 0.90 16 50 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 51 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -69.28 397.12 3.54 -65.74 By element: Atomic # 1 Polarization: 47.07 SS G_CDS: 0.56 Total: 47.63 kcal Atomic # 6 Polarization: -30.38 SS G_CDS: 5.38 Total: -25.00 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -1.79 Total: -82.26 kcal Atomic # 8 Polarization: -52.28 SS G_CDS: -2.67 Total: -54.95 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.05 Total: 48.84 kcal Total: -69.28 3.54 -65.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361481285.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.864 kcal (2) G-P(sol) polarization free energy of solvation -69.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds