Wall clock time and date at job start Wed Apr 1 2020 04:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47035 * 2 1 4 4 N 1.46494 * 109.47000 * 180.02562 * 3 2 1 5 5 C 1.34778 * 120.00123 * 269.99624 * 4 3 2 6 6 O 1.21277 * 120.00353 * 179.97438 * 5 4 3 7 7 C 1.50698 * 119.99651 * 0.02562 * 5 4 3 8 8 C 1.50699 * 109.47139 * 179.97438 * 7 5 4 9 9 C 1.37641 * 120.12542 * 265.00310 * 8 7 5 10 10 C 1.38617 * 120.25007 * 179.97438 * 9 8 7 11 11 C 1.38661 * 120.50030 * 0.02562 * 10 9 8 12 12 C 1.37597 * 120.24583 * 0.02562 * 11 10 9 13 13 C 1.40699 * 120.13300 * 84.72208 * 8 7 5 14 14 C 1.41395 * 120.23679 * 359.97438 * 13 8 7 15 15 H 1.07993 * 120.00429 * 333.89405 * 14 13 8 16 16 C 1.39946 * 119.99777 * 153.89897 * 14 13 8 17 17 N 1.30831 * 120.00168 * 343.71073 * 16 14 13 18 18 Si 1.86799 * 120.00179 * 163.71148 * 16 14 13 19 19 H 1.48498 * 109.47170 * 90.00154 * 18 16 14 20 20 H 1.48504 * 109.46953 * 209.99817 * 18 16 14 21 21 H 1.48495 * 109.46977 * 329.99501 * 18 16 14 22 22 C 1.46501 * 120.00177 * 90.00579 * 4 3 2 23 23 H 1.08996 * 109.46989 * 179.97438 * 22 4 3 24 24 C 1.53001 * 109.46784 * 299.99652 * 22 4 3 25 25 C 1.50698 * 109.47236 * 59.99284 * 22 4 3 26 26 O 1.20820 * 120.00304 * 0.02562 * 25 22 4 27 27 O 1.34235 * 119.99854 * 180.02562 * 25 22 4 28 28 C 1.45199 * 116.99789 * 180.02562 * 27 25 22 29 29 C 1.52998 * 109.46724 * 179.97438 * 28 27 25 30 30 H 1.08997 * 109.46964 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46765 * 299.99375 * 1 2 3 32 32 H 1.08997 * 109.47443 * 59.99509 * 1 2 3 33 33 H 1.08999 * 109.46579 * 240.00666 * 2 1 3 34 34 H 1.08998 * 109.47068 * 120.00102 * 2 1 3 35 35 H 1.09004 * 109.47050 * 59.99951 * 3 2 1 36 36 H 1.09003 * 109.46991 * 300.00653 * 3 2 1 37 37 H 1.08999 * 109.47285 * 299.99575 * 7 5 4 38 38 H 1.08999 * 109.47689 * 59.99367 * 7 5 4 39 39 H 1.07998 * 119.88023 * 359.97438 * 9 8 7 40 40 H 1.07998 * 119.75418 * 179.97438 * 10 9 8 41 41 H 1.07992 * 119.87948 * 180.02562 * 11 10 9 42 42 H 1.08004 * 120.12526 * 179.97438 * 12 11 10 43 43 H 0.96995 * 120.00246 * 180.02562 * 17 16 14 44 44 H 1.09001 * 109.47071 * 59.99580 * 24 22 4 45 45 H 1.08994 * 109.47533 * 180.02562 * 24 22 4 46 46 H 1.09005 * 109.47228 * 300.00251 * 24 22 4 47 47 H 1.08999 * 109.47284 * 299.99831 * 28 27 25 48 48 H 1.08996 * 109.47270 * 59.99804 * 28 27 25 49 49 H 1.08996 * 109.47258 * 59.99979 * 29 28 27 50 50 H 1.09007 * 109.47048 * 179.97438 * 29 28 27 51 51 H 1.08999 * 109.47558 * 299.99581 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1794 1.4424 1.1663 6 8 5.3921 1.4419 1.1658 7 6 3.4264 1.4417 2.4717 8 6 4.4061 1.4411 3.6167 9 6 4.7764 0.2548 4.2084 10 6 5.6778 0.2512 5.2615 11 6 6.2160 1.4396 5.7313 12 6 5.8593 2.6374 5.1556 13 6 4.9504 2.6526 4.0813 14 6 4.5822 3.8767 3.4769 15 1 4.2496 3.8932 2.4496 16 6 4.6490 5.0669 4.2100 17 7 4.7372 5.0275 5.5148 18 14 4.6120 6.7119 3.3257 19 1 3.2055 7.1676 3.1865 20 1 5.3812 7.7122 4.1088 21 1 5.2200 6.5637 1.9791 22 6 4.2370 1.4428 -1.2696 23 1 5.3087 1.4432 -1.0709 24 6 3.8670 0.1937 -2.0720 25 6 3.8725 2.6734 -2.0595 26 8 3.0827 3.4688 -1.6086 27 8 4.4253 2.8858 -3.2642 28 6 4.0283 4.0920 -3.9682 29 6 4.7570 4.1616 -5.3116 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 2.7995 2.3315 2.5300 38 1 2.8000 0.5516 2.5294 39 1 4.3632 -0.6767 3.8509 40 1 5.9625 -0.6842 5.7201 41 1 6.9177 1.4251 6.5520 42 1 6.2794 3.5619 5.5233 43 1 4.7831 5.8524 6.0229 44 1 2.7953 0.1937 -2.2707 45 1 4.4119 0.1936 -3.0160 46 1 4.1306 -0.6964 -1.5007 47 1 2.9519 4.0756 -4.1387 48 1 4.2879 4.9646 -3.3688 49 1 4.4978 3.2890 -5.9112 50 1 4.4587 5.0669 -5.8404 51 1 5.8334 4.1783 -5.1408 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361629167.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:09 Heat of formation + Delta-G solvation = -112.052475 kcal Electronic energy + Delta-G solvation = -31953.063249 eV Core-core repulsion = 27817.064758 eV Total energy + Delta-G solvation = -4135.998491 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.86346 -39.44633 -37.54014 -36.71545 -35.90601 -33.60568 -33.54650 -32.06299 -31.74613 -30.64401 -29.39881 -26.79998 -26.33285 -25.13086 -24.78454 -23.03195 -21.74175 -21.25786 -20.87137 -19.84240 -18.63992 -17.78794 -17.11192 -16.92707 -16.65050 -16.42606 -15.58810 -15.36128 -14.64418 -14.55300 -14.43409 -14.33974 -13.74532 -13.59987 -13.54218 -13.31459 -13.01038 -12.88803 -12.80028 -12.57795 -12.52691 -12.24304 -12.15662 -11.84421 -11.78784 -11.64714 -11.52910 -11.45958 -11.26344 -11.08069 -11.02369 -10.90877 -10.68327 -10.65591 -10.53514 -10.36090 -10.31323 -9.43913 -9.32457 -9.19807 -9.10110 -8.52405 -7.27015 -7.24583 -6.69086 -4.29338 2.18119 2.36886 2.83545 3.00082 3.10380 3.17678 3.25389 3.31612 3.38110 3.99402 4.50587 4.70039 4.71507 4.77320 4.80510 4.91350 4.99151 5.06236 5.07007 5.20940 5.34203 5.42168 5.48925 5.50364 5.54967 5.66915 5.71004 5.72580 5.78149 5.86123 5.89190 5.98972 6.03444 6.08742 6.12960 6.27165 6.32552 6.35529 6.49611 6.54980 6.67785 6.84264 7.13985 7.34022 7.46714 7.62681 7.71590 7.74572 7.97023 8.12260 8.17478 8.36392 8.68733 8.74801 8.96913 9.06185 10.24893 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.008786 B = 0.004067 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3185.942173 B = 6882.608934 C = 8518.867065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.151 4.151 3 C 0.110 3.890 4 N -0.607 5.607 5 C 0.524 3.476 6 O -0.517 6.517 7 C -0.065 4.065 8 C -0.183 4.183 9 C -0.080 4.080 10 C -0.240 4.240 11 C -0.107 4.107 12 C -0.159 4.159 13 C 0.130 3.870 14 C -0.455 4.455 15 H 0.073 0.927 16 C 0.079 3.921 17 N -0.795 5.795 18 Si 0.899 3.101 19 H -0.269 1.269 20 H -0.276 1.276 21 H -0.262 1.262 22 C 0.148 3.852 23 H 0.137 0.863 24 C -0.155 4.155 25 C 0.451 3.549 26 O -0.494 6.494 27 O -0.358 6.358 28 C 0.060 3.940 29 C -0.151 4.151 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.117 0.883 43 H 0.279 0.721 44 H 0.066 0.934 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.068 0.932 48 H 0.070 0.930 49 H 0.066 0.934 50 H 0.078 0.922 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.259 -5.399 -17.050 18.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.189 4.189 3 C -0.013 4.013 4 N -0.343 5.343 5 C 0.314 3.686 6 O -0.390 6.390 7 C -0.104 4.104 8 C -0.185 4.185 9 C -0.098 4.098 10 C -0.260 4.260 11 C -0.125 4.125 12 C -0.179 4.179 13 C 0.127 3.873 14 C -0.485 4.485 15 H 0.091 0.909 16 C -0.138 4.138 17 N -0.421 5.421 18 Si 0.724 3.276 19 H -0.195 1.195 20 H -0.201 1.201 21 H -0.186 1.186 22 C 0.042 3.958 23 H 0.154 0.846 24 C -0.213 4.213 25 C 0.292 3.708 26 O -0.380 6.380 27 O -0.275 6.275 28 C -0.014 4.014 29 C -0.208 4.208 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.116 0.884 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.135 0.865 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.087 0.913 48 H 0.088 0.912 49 H 0.085 0.915 50 H 0.097 0.903 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.814 -4.946 -16.702 18.363 hybrid contribution -0.173 1.113 -0.355 1.182 sum -5.988 -3.833 -17.057 18.479 Atomic orbital electron populations 1.21697 0.95264 1.01708 1.02051 1.22199 0.96127 0.97583 1.03021 1.21673 0.78955 0.96334 1.04300 1.47951 1.06804 1.75568 1.03960 1.21420 0.88422 0.73938 0.84844 1.90669 1.14143 1.47439 1.86746 1.20291 0.97749 1.02899 0.89493 1.19068 1.04376 0.93972 1.01061 1.20285 0.97756 0.95341 0.96449 1.20296 1.06389 0.96215 1.03057 1.20671 0.99457 0.93492 0.98904 1.21293 1.00205 0.96387 0.99965 1.17329 0.88234 0.91355 0.90353 1.19475 1.39315 0.90931 0.98764 0.90862 1.25847 0.92355 1.01134 0.94513 1.69820 1.35857 1.29993 1.06381 0.86445 0.79142 0.81231 0.80779 1.19471 1.20055 1.18619 1.20425 1.01146 0.89983 0.84248 0.84601 1.22194 1.02529 0.96269 1.00281 1.24383 0.78388 0.88132 0.79870 1.90667 1.32588 1.45941 1.68818 1.86504 1.65527 1.44107 1.31342 1.23014 0.99745 0.85509 0.93093 1.21797 1.01571 1.02828 0.94635 0.92599 0.92254 0.92866 0.91348 0.91295 0.89556 0.90174 0.88435 0.90406 0.89795 0.89693 0.89617 0.86541 0.91004 0.91535 0.90404 0.90411 0.91343 0.91189 0.91537 0.90341 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.16 0.37 -0.96 16 2 C -0.15 -1.58 5.98 -26.73 -0.16 -1.74 16 3 C 0.11 1.46 4.18 -4.04 -0.02 1.44 16 4 N -0.61 -9.66 2.17 -167.43 -0.36 -10.03 16 5 C 0.52 10.51 7.28 -10.99 -0.08 10.43 16 6 O -0.52 -12.37 15.36 5.56 0.09 -12.29 16 7 C -0.06 -1.31 3.73 -29.04 -0.11 -1.42 16 8 C -0.18 -4.46 4.43 -103.91 -0.46 -4.92 16 9 C -0.08 -1.86 9.66 -39.66 -0.38 -2.24 16 10 C -0.24 -5.64 10.05 -39.29 -0.39 -6.04 16 11 C -0.11 -2.64 10.02 -39.66 -0.40 -3.04 16 12 C -0.16 -4.33 8.69 -38.87 -0.34 -4.66 16 13 C 0.13 3.54 5.56 -106.82 -0.59 2.94 16 14 C -0.46 -12.39 8.14 -37.74 -0.31 -12.70 16 15 H 0.07 1.99 6.67 -52.49 -0.35 1.64 16 16 C 0.08 2.05 5.16 -17.34 -0.09 1.96 16 17 N -0.79 -20.96 10.96 55.55 0.61 -20.35 16 18 Si 0.90 19.82 29.59 -169.99 -5.03 14.79 16 19 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 20 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 21 H -0.26 -5.95 7.11 56.52 0.40 -5.55 16 22 C 0.15 2.10 3.16 -69.08 -0.22 1.88 16 23 H 0.14 2.13 6.90 -51.93 -0.36 1.77 16 24 C -0.15 -1.55 8.07 37.16 0.30 -1.25 16 25 C 0.45 6.68 6.99 36.00 0.25 6.93 16 26 O -0.49 -8.58 14.26 -18.75 -0.27 -8.84 16 27 O -0.36 -4.55 10.12 -39.27 -0.40 -4.95 16 28 C 0.06 0.63 6.19 37.16 0.23 0.86 16 29 C -0.15 -1.11 10.29 37.16 0.38 -0.72 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.65 5.44 -51.93 -0.28 0.37 16 34 H 0.07 0.78 7.22 -51.93 -0.37 0.40 16 35 H 0.09 1.19 6.44 -51.93 -0.33 0.86 16 36 H 0.08 1.05 6.28 -51.93 -0.33 0.72 16 37 H 0.10 2.00 6.34 -51.93 -0.33 1.67 16 38 H 0.08 1.32 7.09 -51.93 -0.37 0.95 16 39 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 40 H 0.08 1.77 8.06 -52.49 -0.42 1.34 16 41 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 42 H 0.12 3.25 6.20 -52.48 -0.33 2.93 16 43 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 44 H 0.07 0.61 6.17 -51.93 -0.32 0.29 16 45 H 0.08 0.66 8.11 -51.93 -0.42 0.24 16 46 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 48 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 49 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 51 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 409.89 15.07 6.18 6.18 Total: -1.00 -32.40 409.89 -9.20 -41.60 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -8.00 Total: 7.15 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -2.02 Total: -13.26 kcal Atomic # 7 Polarization: -30.63 SS G_CDS: 0.24 Total: -30.38 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.58 Total: -26.08 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.03 Total: 14.79 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.40 -9.20 -41.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361629167.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.452 kcal (2) G-P(sol) polarization free energy of solvation -32.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds