Wall clock time and date at job start Wed Apr 1 2020 04:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47035 * 2 1 4 4 N 1.46494 * 109.47000 * 180.02562 * 3 2 1 5 5 C 1.34778 * 120.00123 * 269.99624 * 4 3 2 6 6 O 1.21277 * 120.00353 * 179.97438 * 5 4 3 7 7 C 1.50698 * 119.99651 * 0.02562 * 5 4 3 8 8 C 1.50699 * 109.47139 * 179.97438 * 7 5 4 9 9 C 1.37641 * 120.12542 * 265.00310 * 8 7 5 10 10 C 1.38617 * 120.25007 * 179.97438 * 9 8 7 11 11 C 1.38661 * 120.50030 * 0.02562 * 10 9 8 12 12 C 1.37597 * 120.24583 * 0.02562 * 11 10 9 13 13 C 1.40699 * 120.13300 * 84.72208 * 8 7 5 14 14 C 1.41395 * 120.23679 * 359.97438 * 13 8 7 15 15 H 1.07993 * 120.00429 * 333.89405 * 14 13 8 16 16 C 1.39946 * 119.99777 * 153.89897 * 14 13 8 17 17 N 1.30831 * 120.00168 * 343.71073 * 16 14 13 18 18 Si 1.86799 * 120.00179 * 163.71148 * 16 14 13 19 19 H 1.48498 * 109.47170 * 90.00154 * 18 16 14 20 20 H 1.48504 * 109.46953 * 209.99817 * 18 16 14 21 21 H 1.48495 * 109.46977 * 329.99501 * 18 16 14 22 22 C 1.46501 * 120.00177 * 90.00579 * 4 3 2 23 23 H 1.08996 * 109.46989 * 179.97438 * 22 4 3 24 24 C 1.53001 * 109.46784 * 299.99652 * 22 4 3 25 25 C 1.50698 * 109.47236 * 59.99284 * 22 4 3 26 26 O 1.20820 * 120.00304 * 0.02562 * 25 22 4 27 27 O 1.34235 * 119.99854 * 180.02562 * 25 22 4 28 28 C 1.45199 * 116.99789 * 180.02562 * 27 25 22 29 29 C 1.52998 * 109.46724 * 179.97438 * 28 27 25 30 30 H 1.08997 * 109.46964 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46765 * 299.99375 * 1 2 3 32 32 H 1.08997 * 109.47443 * 59.99509 * 1 2 3 33 33 H 1.08999 * 109.46579 * 240.00666 * 2 1 3 34 34 H 1.08998 * 109.47068 * 120.00102 * 2 1 3 35 35 H 1.09004 * 109.47050 * 59.99951 * 3 2 1 36 36 H 1.09003 * 109.46991 * 300.00653 * 3 2 1 37 37 H 1.08999 * 109.47285 * 299.99575 * 7 5 4 38 38 H 1.08999 * 109.47689 * 59.99367 * 7 5 4 39 39 H 1.07998 * 119.88023 * 359.97438 * 9 8 7 40 40 H 1.07998 * 119.75418 * 179.97438 * 10 9 8 41 41 H 1.07992 * 119.87948 * 180.02562 * 11 10 9 42 42 H 1.08004 * 120.12526 * 179.97438 * 12 11 10 43 43 H 0.96995 * 120.00246 * 180.02562 * 17 16 14 44 44 H 1.09001 * 109.47071 * 59.99580 * 24 22 4 45 45 H 1.08994 * 109.47533 * 180.02562 * 24 22 4 46 46 H 1.09005 * 109.47228 * 300.00251 * 24 22 4 47 47 H 1.08999 * 109.47284 * 299.99831 * 28 27 25 48 48 H 1.08996 * 109.47270 * 59.99804 * 28 27 25 49 49 H 1.08996 * 109.47258 * 59.99979 * 29 28 27 50 50 H 1.09007 * 109.47048 * 179.97438 * 29 28 27 51 51 H 1.08999 * 109.47558 * 299.99581 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1794 1.4424 1.1663 6 8 5.3921 1.4419 1.1658 7 6 3.4264 1.4417 2.4717 8 6 4.4061 1.4411 3.6167 9 6 4.7764 0.2548 4.2084 10 6 5.6778 0.2512 5.2615 11 6 6.2160 1.4396 5.7313 12 6 5.8593 2.6374 5.1556 13 6 4.9504 2.6526 4.0813 14 6 4.5822 3.8767 3.4769 15 1 4.2496 3.8932 2.4496 16 6 4.6490 5.0669 4.2100 17 7 4.7372 5.0275 5.5148 18 14 4.6120 6.7119 3.3257 19 1 3.2055 7.1676 3.1865 20 1 5.3812 7.7122 4.1088 21 1 5.2200 6.5637 1.9791 22 6 4.2370 1.4428 -1.2696 23 1 5.3087 1.4432 -1.0709 24 6 3.8670 0.1937 -2.0720 25 6 3.8725 2.6734 -2.0595 26 8 3.0827 3.4688 -1.6086 27 8 4.4253 2.8858 -3.2642 28 6 4.0283 4.0920 -3.9682 29 6 4.7570 4.1616 -5.3116 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 2.7995 2.3315 2.5300 38 1 2.8000 0.5516 2.5294 39 1 4.3632 -0.6767 3.8509 40 1 5.9625 -0.6842 5.7201 41 1 6.9177 1.4251 6.5520 42 1 6.2794 3.5619 5.5233 43 1 4.7831 5.8524 6.0229 44 1 2.7953 0.1937 -2.2707 45 1 4.4119 0.1936 -3.0160 46 1 4.1306 -0.6964 -1.5007 47 1 2.9519 4.0756 -4.1387 48 1 4.2879 4.9646 -3.3688 49 1 4.4978 3.2890 -5.9112 50 1 4.4587 5.0669 -5.8404 51 1 5.8334 4.1783 -5.1408 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361629167.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:08 Heat of formation + Delta-G solvation = -128.159388 kcal Electronic energy + Delta-G solvation = -31953.761697 eV Core-core repulsion = 27817.064758 eV Total energy + Delta-G solvation = -4136.696939 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.07578 -40.86248 -39.28336 -38.00922 -37.17084 -35.52809 -34.60845 -33.46060 -32.79817 -31.83014 -31.33372 -28.51088 -27.30269 -26.92277 -25.94791 -23.97301 -22.87743 -22.69528 -22.42765 -21.42941 -20.08322 -19.08994 -18.97519 -18.18704 -17.84757 -17.53822 -17.24706 -16.86889 -16.23557 -16.11476 -15.53105 -15.43118 -15.30366 -15.17403 -14.74334 -14.48410 -14.41942 -14.20049 -13.89978 -13.63791 -13.45672 -13.43053 -13.39604 -13.12990 -13.05979 -12.94031 -12.82310 -12.76971 -12.70577 -12.57409 -12.52379 -12.40088 -12.17149 -12.04484 -11.60482 -11.56237 -11.44347 -11.31028 -11.20919 -11.05894 -10.79672 -9.81183 -9.23009 -9.17042 -8.63208 -6.32180 0.95060 1.00232 1.09048 1.28235 1.30358 1.39524 1.47720 1.77497 2.08608 2.14985 2.74773 3.45533 3.64051 3.84140 3.91021 3.95714 3.96697 4.04204 4.11466 4.18930 4.29393 4.33575 4.36826 4.46296 4.55548 4.58666 4.67132 4.70210 4.75224 4.75902 4.78282 4.80465 4.89516 5.00083 5.06359 5.07670 5.12469 5.17236 5.20420 5.27381 5.36157 5.36379 5.47780 5.52959 5.54873 5.75607 6.02062 6.14713 6.20987 6.30322 6.41005 6.58265 6.72490 6.97136 7.09423 7.21833 8.33055 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.008786 B = 0.004067 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3185.942173 B = 6882.608934 C = 8518.867065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 C 0.107 3.893 4 N -0.599 5.599 5 C 0.524 3.476 6 O -0.566 6.566 7 C -0.061 4.061 8 C -0.188 4.188 9 C -0.088 4.088 10 C -0.238 4.238 11 C -0.116 4.116 12 C -0.192 4.192 13 C 0.097 3.903 14 C -0.484 4.484 15 H 0.060 0.940 16 C 0.042 3.958 17 N -0.822 5.822 18 Si 0.962 3.038 19 H -0.257 1.257 20 H -0.260 1.260 21 H -0.277 1.277 22 C 0.142 3.858 23 H 0.118 0.882 24 C -0.144 4.144 25 C 0.454 3.546 26 O -0.526 6.526 27 O -0.354 6.354 28 C 0.051 3.949 29 C -0.144 4.144 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.113 0.887 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.107 0.893 42 H 0.097 0.903 43 H 0.287 0.713 44 H 0.080 0.920 45 H 0.097 0.903 46 H 0.083 0.917 47 H 0.076 0.924 48 H 0.055 0.945 49 H 0.077 0.923 50 H 0.100 0.900 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.519 -6.973 -19.001 21.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.180 4.180 3 C -0.015 4.015 4 N -0.333 5.333 5 C 0.315 3.685 6 O -0.444 6.444 7 C -0.100 4.100 8 C -0.190 4.190 9 C -0.106 4.106 10 C -0.257 4.257 11 C -0.134 4.134 12 C -0.212 4.212 13 C 0.095 3.905 14 C -0.513 4.513 15 H 0.078 0.922 16 C -0.173 4.173 17 N -0.449 5.449 18 Si 0.783 3.217 19 H -0.182 1.182 20 H -0.184 1.184 21 H -0.202 1.202 22 C 0.036 3.964 23 H 0.135 0.865 24 C -0.201 4.201 25 C 0.297 3.703 26 O -0.415 6.415 27 O -0.270 6.270 28 C -0.022 4.022 29 C -0.201 4.201 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.131 0.869 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.125 0.875 42 H 0.115 0.885 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.116 0.884 46 H 0.102 0.898 47 H 0.094 0.906 48 H 0.074 0.926 49 H 0.096 0.904 50 H 0.118 0.882 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.109 -6.535 -18.683 21.031 hybrid contribution 0.215 1.523 0.191 1.550 sum -6.894 -5.012 -18.491 20.361 Atomic orbital electron populations 1.21685 0.93796 1.02738 1.02226 1.22129 0.97255 0.95152 1.03507 1.21874 0.77137 0.98548 1.03972 1.47895 1.07933 1.73839 1.03622 1.21251 0.87725 0.73636 0.85890 1.90644 1.15993 1.50185 1.87559 1.20258 0.97050 1.04108 0.88619 1.19524 1.04185 0.93567 1.01680 1.20730 0.97489 0.96321 0.96099 1.20741 1.05397 0.96969 1.02630 1.20959 0.99820 0.93263 0.99369 1.21293 1.01686 0.96731 1.01483 1.17691 0.89048 0.92683 0.91115 1.19524 1.41237 0.92197 0.98388 0.92177 1.26512 0.91786 1.03890 0.95094 1.69860 1.36473 1.31168 1.07354 0.85521 0.79704 0.77599 0.78829 1.18174 1.18378 1.20169 1.20663 0.99958 0.91885 0.83898 0.86460 1.22172 1.03716 0.93876 1.00358 1.24466 0.77776 0.87773 0.80330 1.90655 1.34213 1.46927 1.69669 1.86502 1.65011 1.45072 1.30419 1.23325 1.00824 0.84023 0.94042 1.21817 1.00952 1.04449 0.92846 0.91100 0.92724 0.92161 0.89865 0.91782 0.90624 0.89871 0.89375 0.86866 0.86274 0.86377 0.87516 0.88542 0.90274 0.90080 0.88440 0.89822 0.90593 0.92646 0.90390 0.88193 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.91 71.98 0.71 -1.49 16 2 C -0.14 -2.63 5.98 30.60 0.18 -2.45 16 3 C 0.11 2.71 4.18 86.38 0.36 3.07 16 4 N -0.60 -18.94 2.17 -802.02 -1.74 -20.68 16 5 C 0.52 21.36 7.28 87.66 0.64 22.00 16 6 O -0.57 -28.00 15.36 -3.02 -0.05 -28.05 16 7 C -0.06 -2.48 3.73 29.10 0.11 -2.37 16 8 C -0.19 -9.26 4.43 -19.40 -0.09 -9.35 16 9 C -0.09 -3.99 9.66 22.22 0.21 -3.77 16 10 C -0.24 -10.84 10.05 22.46 0.23 -10.61 16 11 C -0.12 -5.75 10.02 22.22 0.22 -5.53 16 12 C -0.19 -10.86 8.69 22.73 0.20 -10.66 16 13 C 0.10 5.48 5.56 -21.29 -0.12 5.36 16 14 C -0.48 -27.60 8.14 23.46 0.19 -27.41 16 15 H 0.06 3.47 6.67 -2.91 -0.02 3.45 16 16 C 0.04 2.25 5.16 85.26 0.44 2.69 16 17 N -0.82 -44.93 10.96 21.83 0.24 -44.69 16 18 Si 0.96 42.00 29.59 68.60 2.03 44.03 16 19 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 20 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 C 0.14 3.95 3.16 44.24 0.14 4.09 16 23 H 0.12 3.77 6.90 -2.39 -0.02 3.75 16 24 C -0.14 -2.55 8.07 71.98 0.58 -1.97 16 25 C 0.45 13.34 6.99 71.24 0.50 13.83 16 26 O -0.53 -18.43 14.26 21.98 0.31 -18.11 16 27 O -0.35 -8.70 10.12 -51.47 -0.52 -9.23 16 28 C 0.05 1.03 6.19 71.98 0.45 1.47 16 29 C -0.14 -1.82 10.29 71.98 0.74 -1.08 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.08 1.31 5.44 -2.39 -0.01 1.29 16 34 H 0.06 1.27 7.22 -2.39 -0.02 1.25 16 35 H 0.08 2.08 6.44 -2.38 -0.02 2.07 16 36 H 0.08 2.09 6.28 -2.39 -0.01 2.08 16 37 H 0.09 3.74 6.34 -2.39 -0.02 3.72 16 38 H 0.11 3.66 7.09 -2.39 -0.02 3.64 16 39 H 0.12 4.47 8.06 -2.91 -0.02 4.44 16 40 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 41 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 42 H 0.10 5.70 6.20 -2.91 -0.02 5.68 16 43 H 0.29 14.20 8.30 -92.71 -0.77 13.43 16 44 H 0.08 1.22 6.17 -2.39 -0.01 1.20 16 45 H 0.10 1.38 8.11 -2.39 -0.02 1.37 16 46 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 47 H 0.08 1.40 8.13 -2.39 -0.02 1.38 16 48 H 0.06 1.26 8.13 -2.39 -0.02 1.25 16 49 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 50 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 51 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -73.86 409.89 6.90 -66.97 By element: Atomic # 1 Polarization: 33.01 SS G_CDS: 0.93 Total: 33.94 kcal Atomic # 6 Polarization: -29.86 SS G_CDS: 5.70 Total: -24.17 kcal Atomic # 7 Polarization: -63.88 SS G_CDS: -1.50 Total: -65.38 kcal Atomic # 8 Polarization: -55.13 SS G_CDS: -0.25 Total: -55.38 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -73.86 6.90 -66.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361629167.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.192 kcal (2) G-P(sol) polarization free energy of solvation -73.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds