Wall clock time and date at job start Wed Apr 1 2020 05:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99899 * 2 1 4 4 C 1.52995 * 109.47177 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47026 * 185.07541 * 4 3 2 6 6 N 1.46504 * 109.47257 * 65.07460 * 4 3 2 7 7 C 1.34776 * 119.99742 * 84.99419 * 6 4 3 8 8 O 1.21276 * 120.00321 * 0.02562 * 7 6 4 9 9 C 1.50698 * 119.99478 * 180.02562 * 7 6 4 10 10 H 1.09006 * 109.47426 * 299.99948 * 9 7 6 11 11 C 1.50697 * 109.47558 * 60.00469 * 9 7 6 12 12 H 1.08002 * 120.00005 * 35.11302 * 11 9 7 13 13 C 1.37875 * 120.00341 * 215.12027 * 11 9 7 14 14 N 1.31517 * 119.99859 * 354.44578 * 13 11 9 15 15 Si 1.86802 * 120.00155 * 174.44681 * 13 11 9 16 16 H 1.48497 * 109.47101 * 179.97438 * 15 13 11 17 17 H 1.48502 * 109.46960 * 299.99869 * 15 13 11 18 18 H 1.48500 * 109.46791 * 60.00078 * 15 13 11 19 19 C 1.50701 * 109.47053 * 180.02562 * 9 7 6 20 20 C 1.38232 * 120.00089 * 293.00890 * 19 9 7 21 21 C 1.38240 * 120.00185 * 179.76665 * 20 19 9 22 22 C 1.38223 * 119.99864 * 0.48160 * 21 20 19 23 23 C 1.38242 * 120.00051 * 359.79258 * 22 21 20 24 24 C 1.38227 * 119.99933 * 359.95339 * 23 22 21 25 25 C 1.53000 * 109.47296 * 305.07157 * 4 3 2 26 26 H 1.09004 * 109.52246 * 57.82114 * 25 4 3 27 27 C 1.53173 * 109.52336 * 297.68954 * 25 4 3 28 28 C 1.53186 * 109.03605 * 183.11019 * 27 25 4 29 29 C 1.53087 * 109.16062 * 56.98511 * 28 27 25 30 30 O 1.42906 * 109.41369 * 302.39142 * 29 28 27 31 31 C 1.42901 * 114.10182 * 61.16150 * 30 29 28 32 32 H 1.09005 * 109.46723 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.46836 * 299.99258 * 1 2 3 34 34 H 1.08991 * 109.47435 * 59.99750 * 1 2 3 35 35 H 1.09003 * 109.46770 * 60.00155 * 3 2 1 36 36 H 1.08996 * 109.47290 * 300.01044 * 3 2 1 37 37 H 0.96998 * 119.99532 * 264.99901 * 6 4 3 38 38 H 0.97000 * 120.00226 * 179.97438 * 14 13 11 39 39 H 1.08006 * 119.99765 * 359.97438 * 20 19 9 40 40 H 1.08001 * 119.99638 * 180.24839 * 21 20 19 41 41 H 1.08001 * 120.00159 * 179.76588 * 22 21 20 42 42 H 1.08007 * 119.99772 * 179.97438 * 23 22 21 43 43 H 1.08004 * 119.99950 * 179.97438 * 24 23 22 44 44 H 1.08994 * 109.54631 * 302.98178 * 27 25 4 45 45 H 1.09002 * 109.54232 * 63.24856 * 27 25 4 46 46 H 1.08998 * 109.51974 * 176.89019 * 28 27 25 47 47 H 1.09000 * 109.52200 * 297.01817 * 28 27 25 48 48 H 1.09000 * 109.48603 * 62.36910 * 29 28 27 49 49 H 1.09001 * 109.48225 * 182.39683 * 29 28 27 50 50 H 1.08996 * 109.48120 * 178.86450 * 31 30 29 51 51 H 1.08993 * 109.48013 * 58.82259 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9784 2.1764 0.0903 6 7 3.9758 0.5661 -1.2535 7 6 4.1645 1.3262 -2.3504 8 8 3.9703 2.5222 -2.3002 9 6 4.6170 0.6897 -3.6393 10 1 5.5810 0.2044 -3.4861 11 6 3.6025 -0.3352 -4.0768 12 1 2.5512 -0.1654 -3.8968 13 6 4.0163 -1.4897 -4.7067 14 7 5.2828 -1.6479 -5.0239 15 14 2.7781 -2.8291 -5.1096 16 1 3.4710 -3.9579 -5.7812 17 1 2.1453 -3.3116 -3.8558 18 1 1.7338 -2.2823 -6.0127 19 6 4.7519 1.7492 -4.7024 20 6 3.6286 2.4030 -5.1732 21 6 3.7528 3.3783 -6.1450 22 6 4.9992 3.6927 -6.6531 23 6 6.1220 3.0349 -6.1864 24 6 5.9983 2.0634 -5.2110 25 6 3.9789 0.3180 1.1796 26 1 3.5057 -0.6615 1.1103 27 6 3.5696 0.9926 2.4924 28 6 4.0866 0.1556 3.6667 29 6 5.6044 -0.0007 3.5424 30 8 5.9184 -0.6059 2.2865 31 6 5.5010 0.1553 1.1514 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 1.6886 1.8463 0.8900 36 1 1.6885 1.8464 -0.8898 37 1 4.1315 -0.3905 -1.2935 38 1 5.5741 -2.4603 -5.4668 39 1 2.6542 2.1541 -4.7793 40 1 2.8756 3.8918 -6.5098 41 1 5.0959 4.4520 -7.4151 42 1 7.0958 3.2804 -6.5838 43 1 6.8755 1.5492 -4.8467 44 1 4.0017 1.9922 2.5389 45 1 2.4830 1.0609 2.5440 46 1 3.8476 0.6571 4.6044 47 1 3.6156 -0.8272 3.6487 48 1 6.0770 0.9797 3.6016 49 1 5.9724 -0.6311 4.3519 50 1 5.7942 -0.3629 0.2384 51 1 5.9721 1.1377 1.1794 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361630670.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:35 Heat of formation + Delta-G solvation = -120.147255 kcal Electronic energy + Delta-G solvation = -32114.493903 eV Core-core repulsion = 27978.144396 eV Total energy + Delta-G solvation = -4136.349507 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.99059 -38.91918 -37.96782 -37.30865 -35.07070 -33.61658 -33.13605 -31.18085 -30.88117 -29.90978 -28.83836 -27.26256 -25.99425 -25.18377 -23.87661 -23.60523 -21.78475 -21.53475 -20.47312 -20.05496 -19.12783 -16.90822 -16.54940 -16.42612 -16.06984 -15.88386 -15.71367 -15.54627 -15.16288 -15.00372 -14.60919 -14.46980 -14.13518 -13.92665 -13.85034 -13.45110 -13.05958 -12.91616 -12.69323 -12.47776 -12.31669 -12.24260 -12.04309 -11.69122 -11.62951 -11.50981 -11.31005 -11.21722 -11.01085 -10.97092 -10.87793 -10.68168 -10.37051 -10.25022 -10.24102 -9.97546 -9.50056 -9.43949 -9.38943 -8.75148 -8.58000 -8.32782 -7.91942 -7.57242 -6.23279 -4.29088 2.40616 2.43438 3.24806 3.29741 3.31896 3.68650 3.84044 3.87461 4.11239 4.32419 4.64377 4.77296 4.82395 4.83637 4.89271 5.10777 5.13320 5.27642 5.29664 5.38750 5.42815 5.50816 5.54079 5.59275 5.65331 5.70530 5.74243 5.74836 5.78840 5.81702 5.89819 5.92064 5.98869 5.99582 6.14117 6.24379 6.33223 6.45705 6.52970 6.63556 6.88250 7.00358 7.16068 7.20141 7.22693 7.34277 7.39556 7.47829 7.66699 7.79542 7.98732 8.10798 8.41501 8.74369 9.24782 9.36941 10.85015 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.009410 B = 0.003805 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2974.776203 B = 7356.139419 C = 8093.128548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.052 3.948 4 C 0.159 3.841 5 H 0.094 0.906 6 N -0.719 5.719 7 C 0.529 3.471 8 O -0.571 6.571 9 C 0.051 3.949 10 H 0.088 0.912 11 C -0.511 4.511 12 H 0.061 0.939 13 C 0.075 3.925 14 N -0.878 5.878 15 Si 0.897 3.103 16 H -0.286 1.286 17 H -0.273 1.273 18 H -0.276 1.276 19 C -0.007 4.007 20 C -0.085 4.085 21 C -0.135 4.135 22 C -0.150 4.150 23 C -0.132 4.132 24 C -0.118 4.118 25 C -0.125 4.125 26 H 0.096 0.904 27 C -0.114 4.114 28 C -0.153 4.153 29 C 0.058 3.942 30 O -0.381 6.381 31 C 0.066 3.934 32 H 0.082 0.918 33 H 0.034 0.966 34 H 0.039 0.961 35 H 0.049 0.951 36 H 0.056 0.944 37 H 0.408 0.592 38 H 0.267 0.733 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.111 0.889 44 H 0.063 0.937 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.072 0.928 48 H 0.047 0.953 49 H 0.089 0.911 50 H 0.101 0.899 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.916 4.035 13.157 14.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.296 6.296 3 C -0.026 4.026 4 C 0.053 3.947 5 H 0.112 0.888 6 N -0.370 5.370 7 C 0.319 3.681 8 O -0.450 6.450 9 C 0.030 3.970 10 H 0.106 0.894 11 C -0.549 4.549 12 H 0.079 0.921 13 C -0.130 4.130 14 N -0.513 5.513 15 Si 0.724 3.276 16 H -0.212 1.212 17 H -0.198 1.198 18 H -0.201 1.201 19 C -0.008 4.008 20 C -0.103 4.103 21 C -0.153 4.153 22 C -0.168 4.168 23 C -0.150 4.150 24 C -0.136 4.136 25 C -0.144 4.144 26 H 0.114 0.886 27 C -0.152 4.152 28 C -0.191 4.191 29 C -0.018 4.018 30 O -0.299 6.299 31 C -0.011 4.011 32 H 0.101 0.899 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.244 0.756 38 H 0.077 0.923 39 H 0.127 0.873 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.129 0.871 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.091 0.909 48 H 0.066 0.934 49 H 0.108 0.892 50 H 0.119 0.881 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.695 4.401 13.076 14.058 hybrid contribution -1.114 -0.714 -0.429 1.391 sum -3.810 3.687 12.648 13.714 Atomic orbital electron populations 1.22675 0.81790 1.02386 0.99457 1.87907 1.18951 1.27503 1.95277 1.23000 0.94443 0.85006 1.00194 1.20808 0.91666 0.97784 0.84460 0.88804 1.45925 1.69809 1.12259 1.09052 1.21678 0.74564 0.86217 0.85596 1.90569 1.53216 1.15885 1.85363 1.18103 1.00776 0.92128 0.85965 0.89410 1.20604 0.92445 1.01596 1.40259 0.92057 1.24945 0.95362 0.98165 0.94533 1.69907 1.14865 1.27345 1.39227 0.86567 0.81225 0.81011 0.78818 1.21178 1.19794 1.20134 1.20028 0.91843 0.92680 0.96226 1.20803 0.98623 0.95047 0.95857 1.20940 0.96650 0.99118 0.98623 1.20781 0.93189 1.01349 1.01472 1.20896 0.97580 0.97948 0.98583 1.20984 0.97375 0.97395 0.97878 1.21970 0.97091 1.01377 0.94008 0.88570 1.21610 1.01371 0.98637 0.93560 1.22165 0.97022 1.01319 0.98598 1.22558 0.94430 0.98142 0.86719 1.87962 1.80349 1.47859 1.13750 1.22663 0.92956 0.96305 0.89131 0.89923 0.94768 0.94222 0.93342 0.92542 0.75627 0.92338 0.87271 0.87714 0.87792 0.87617 0.87051 0.91858 0.91185 0.91144 0.90941 0.93431 0.89242 0.88091 0.93245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.38 -5.72 9.73 -35.23 -0.34 -6.07 16 3 C 0.05 0.75 5.30 37.16 0.20 0.95 16 4 C 0.16 2.37 1.95 -67.93 -0.13 2.24 16 5 H 0.09 1.46 7.58 -51.93 -0.39 1.07 16 6 N -0.72 -12.93 4.24 -53.81 -0.23 -13.15 16 7 C 0.53 11.39 7.01 -10.99 -0.08 11.31 16 8 O -0.57 -13.31 15.12 5.56 0.08 -13.23 16 9 C 0.05 1.21 2.37 -94.08 -0.22 0.98 16 10 H 0.09 2.18 7.13 -51.93 -0.37 1.81 16 11 C -0.51 -12.76 7.43 -34.44 -0.26 -13.02 16 12 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 13 C 0.07 1.91 5.45 -17.82 -0.10 1.81 16 14 N -0.88 -23.24 12.84 55.43 0.71 -22.53 16 15 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 16 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 C -0.01 -0.16 4.29 -104.62 -0.45 -0.61 16 20 C -0.09 -1.92 8.36 -39.58 -0.33 -2.26 16 21 C -0.14 -2.70 10.05 -39.59 -0.40 -3.09 16 22 C -0.15 -2.82 10.05 -39.59 -0.40 -3.22 16 23 C -0.13 -2.58 10.05 -39.58 -0.40 -2.97 16 24 C -0.12 -2.59 9.67 -39.59 -0.38 -2.98 16 25 C -0.13 -1.59 1.85 -90.48 -0.17 -1.76 16 26 H 0.10 1.36 7.49 -51.93 -0.39 0.97 16 27 C -0.11 -1.18 4.92 -26.55 -0.13 -1.31 16 28 C -0.15 -1.42 6.14 -26.59 -0.16 -1.59 16 29 C 0.06 0.59 6.84 37.20 0.25 0.84 16 30 O -0.38 -5.13 10.77 -35.23 -0.38 -5.51 16 31 C 0.07 0.88 5.91 37.21 0.22 1.10 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.59 6.84 -51.93 -0.36 0.23 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.41 7.40 8.16 -40.82 -0.33 7.06 16 38 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 39 H 0.11 2.50 7.86 -52.48 -0.41 2.09 16 40 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 41 H 0.10 1.63 8.06 -52.49 -0.42 1.20 16 42 H 0.11 1.75 8.06 -52.48 -0.42 1.32 16 43 H 0.11 2.36 7.96 -52.48 -0.42 1.94 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.70 6.79 -51.93 -0.35 0.35 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 48 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.10 1.44 7.40 -51.93 -0.38 1.06 16 51 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 411.13 15.07 6.20 6.20 Total: -1.00 -29.21 411.13 -9.25 -38.46 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -8.45 Total: 12.70 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -1.82 Total: -12.05 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.48 Total: -35.68 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.64 Total: -24.80 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -29.21 -9.25 -38.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361630670.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.688 kcal (2) G-P(sol) polarization free energy of solvation -29.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds