Wall clock time and date at job start Wed Apr 1 2020 05:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99899 * 2 1 4 4 C 1.52995 * 109.47177 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47026 * 185.07541 * 4 3 2 6 6 N 1.46504 * 109.47257 * 65.07460 * 4 3 2 7 7 C 1.34776 * 119.99742 * 84.99419 * 6 4 3 8 8 O 1.21276 * 120.00321 * 0.02562 * 7 6 4 9 9 C 1.50698 * 119.99478 * 180.02562 * 7 6 4 10 10 H 1.09006 * 109.47426 * 299.99948 * 9 7 6 11 11 C 1.50697 * 109.47558 * 60.00469 * 9 7 6 12 12 H 1.08002 * 120.00005 * 35.11302 * 11 9 7 13 13 C 1.37875 * 120.00341 * 215.12027 * 11 9 7 14 14 N 1.31517 * 119.99859 * 354.44578 * 13 11 9 15 15 Si 1.86802 * 120.00155 * 174.44681 * 13 11 9 16 16 H 1.48497 * 109.47101 * 179.97438 * 15 13 11 17 17 H 1.48502 * 109.46960 * 299.99869 * 15 13 11 18 18 H 1.48500 * 109.46791 * 60.00078 * 15 13 11 19 19 C 1.50701 * 109.47053 * 180.02562 * 9 7 6 20 20 C 1.38232 * 120.00089 * 293.00890 * 19 9 7 21 21 C 1.38240 * 120.00185 * 179.76665 * 20 19 9 22 22 C 1.38223 * 119.99864 * 0.48160 * 21 20 19 23 23 C 1.38242 * 120.00051 * 359.79258 * 22 21 20 24 24 C 1.38227 * 119.99933 * 359.95339 * 23 22 21 25 25 C 1.53000 * 109.47296 * 305.07157 * 4 3 2 26 26 H 1.09004 * 109.52246 * 57.82114 * 25 4 3 27 27 C 1.53173 * 109.52336 * 297.68954 * 25 4 3 28 28 C 1.53186 * 109.03605 * 183.11019 * 27 25 4 29 29 C 1.53087 * 109.16062 * 56.98511 * 28 27 25 30 30 O 1.42906 * 109.41369 * 302.39142 * 29 28 27 31 31 C 1.42901 * 114.10182 * 61.16150 * 30 29 28 32 32 H 1.09005 * 109.46723 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.46836 * 299.99258 * 1 2 3 34 34 H 1.08991 * 109.47435 * 59.99750 * 1 2 3 35 35 H 1.09003 * 109.46770 * 60.00155 * 3 2 1 36 36 H 1.08996 * 109.47290 * 300.01044 * 3 2 1 37 37 H 0.96998 * 119.99532 * 264.99901 * 6 4 3 38 38 H 0.97000 * 120.00226 * 179.97438 * 14 13 11 39 39 H 1.08006 * 119.99765 * 359.97438 * 20 19 9 40 40 H 1.08001 * 119.99638 * 180.24839 * 21 20 19 41 41 H 1.08001 * 120.00159 * 179.76588 * 22 21 20 42 42 H 1.08007 * 119.99772 * 179.97438 * 23 22 21 43 43 H 1.08004 * 119.99950 * 179.97438 * 24 23 22 44 44 H 1.08994 * 109.54631 * 302.98178 * 27 25 4 45 45 H 1.09002 * 109.54232 * 63.24856 * 27 25 4 46 46 H 1.08998 * 109.51974 * 176.89019 * 28 27 25 47 47 H 1.09000 * 109.52200 * 297.01817 * 28 27 25 48 48 H 1.09000 * 109.48603 * 62.36910 * 29 28 27 49 49 H 1.09001 * 109.48225 * 182.39683 * 29 28 27 50 50 H 1.08996 * 109.48120 * 178.86450 * 31 30 29 51 51 H 1.08993 * 109.48013 * 58.82259 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9784 2.1764 0.0903 6 7 3.9758 0.5661 -1.2535 7 6 4.1645 1.3262 -2.3504 8 8 3.9703 2.5222 -2.3002 9 6 4.6170 0.6897 -3.6393 10 1 5.5810 0.2044 -3.4861 11 6 3.6025 -0.3352 -4.0768 12 1 2.5512 -0.1654 -3.8968 13 6 4.0163 -1.4897 -4.7067 14 7 5.2828 -1.6479 -5.0239 15 14 2.7781 -2.8291 -5.1096 16 1 3.4710 -3.9579 -5.7812 17 1 2.1453 -3.3116 -3.8558 18 1 1.7338 -2.2823 -6.0127 19 6 4.7519 1.7492 -4.7024 20 6 3.6286 2.4030 -5.1732 21 6 3.7528 3.3783 -6.1450 22 6 4.9992 3.6927 -6.6531 23 6 6.1220 3.0349 -6.1864 24 6 5.9983 2.0634 -5.2110 25 6 3.9789 0.3180 1.1796 26 1 3.5057 -0.6615 1.1103 27 6 3.5696 0.9926 2.4924 28 6 4.0866 0.1556 3.6667 29 6 5.6044 -0.0007 3.5424 30 8 5.9184 -0.6059 2.2865 31 6 5.5010 0.1553 1.1514 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 1.6886 1.8463 0.8900 36 1 1.6885 1.8464 -0.8898 37 1 4.1315 -0.3905 -1.2935 38 1 5.5741 -2.4603 -5.4668 39 1 2.6542 2.1541 -4.7793 40 1 2.8756 3.8918 -6.5098 41 1 5.0959 4.4520 -7.4151 42 1 7.0958 3.2804 -6.5838 43 1 6.8755 1.5492 -4.8467 44 1 4.0017 1.9922 2.5389 45 1 2.4830 1.0609 2.5440 46 1 3.8476 0.6571 4.6044 47 1 3.6156 -0.8272 3.6487 48 1 6.0770 0.9797 3.6016 49 1 5.9724 -0.6311 4.3519 50 1 5.7942 -0.3629 0.2384 51 1 5.9721 1.1377 1.1794 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361630670.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:33 Heat of formation + Delta-G solvation = -136.954309 kcal Electronic energy + Delta-G solvation = -32115.222712 eV Core-core repulsion = 27978.144396 eV Total energy + Delta-G solvation = -4137.078316 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.28918 -40.32790 -39.35091 -38.64628 -36.32827 -35.49772 -34.22939 -32.90239 -32.11396 -31.52926 -30.02943 -28.92605 -27.08589 -26.21531 -25.62776 -24.68306 -23.23893 -23.00798 -21.82359 -21.25458 -20.63283 -18.67802 -17.98957 -17.75785 -17.32893 -17.22233 -17.08586 -16.68517 -16.34671 -16.31768 -16.11842 -15.73140 -15.55113 -15.50138 -15.02689 -14.78189 -14.61190 -14.11082 -14.05261 -13.85822 -13.67120 -13.58655 -13.34805 -13.27316 -13.10816 -12.85028 -12.75636 -12.69651 -12.35037 -12.18864 -12.06935 -11.95011 -11.88249 -11.71897 -11.58883 -11.27610 -11.21326 -10.67590 -10.63075 -10.43504 -10.34793 -9.83634 -9.55198 -9.24274 -8.19925 -6.30468 0.76437 0.81575 1.42615 1.43731 1.50831 1.96097 2.42907 2.47506 2.90642 2.93053 3.09372 3.27917 3.62313 3.79309 3.85596 4.03034 4.15929 4.23352 4.27566 4.28251 4.30521 4.35378 4.40234 4.44584 4.50433 4.53056 4.55276 4.57442 4.65455 4.70602 4.78138 4.81867 4.83738 4.88290 4.95559 4.98683 5.06624 5.11756 5.14954 5.23904 5.37810 5.42591 5.45869 5.65743 5.70856 5.79143 5.84150 5.96505 6.22200 6.25330 6.26887 6.41524 6.72662 6.80584 7.36180 7.56269 8.87908 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.009410 B = 0.003805 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2974.776203 B = 7356.139419 C = 8093.128548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.398 6.398 3 C 0.058 3.942 4 C 0.157 3.843 5 H 0.090 0.910 6 N -0.709 5.709 7 C 0.531 3.469 8 O -0.592 6.592 9 C 0.053 3.947 10 H 0.065 0.935 11 C -0.511 4.511 12 H 0.049 0.951 13 C 0.035 3.965 14 N -0.904 5.904 15 Si 0.950 3.050 16 H -0.283 1.283 17 H -0.266 1.266 18 H -0.278 1.278 19 C -0.034 4.034 20 C -0.111 4.111 21 C -0.136 4.136 22 C -0.144 4.144 23 C -0.129 4.129 24 C -0.142 4.142 25 C -0.112 4.112 26 H 0.083 0.917 27 C -0.111 4.111 28 C -0.147 4.147 29 C 0.049 3.951 30 O -0.401 6.401 31 C 0.069 3.931 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.031 0.969 35 H 0.081 0.919 36 H 0.027 0.973 37 H 0.406 0.594 38 H 0.266 0.734 39 H 0.092 0.908 40 H 0.135 0.865 41 H 0.147 0.853 42 H 0.139 0.861 43 H 0.106 0.894 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.097 0.903 47 H 0.066 0.934 48 H 0.057 0.943 49 H 0.107 0.893 50 H 0.081 0.919 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.668 5.042 14.025 15.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.317 6.317 3 C -0.020 4.020 4 C 0.052 3.948 5 H 0.108 0.892 6 N -0.359 5.359 7 C 0.320 3.680 8 O -0.473 6.473 9 C 0.031 3.969 10 H 0.082 0.918 11 C -0.548 4.548 12 H 0.067 0.933 13 C -0.167 4.167 14 N -0.541 5.541 15 Si 0.776 3.224 16 H -0.208 1.208 17 H -0.191 1.191 18 H -0.204 1.204 19 C -0.035 4.035 20 C -0.129 4.129 21 C -0.153 4.153 22 C -0.162 4.162 23 C -0.147 4.147 24 C -0.160 4.160 25 C -0.131 4.131 26 H 0.101 0.899 27 C -0.149 4.149 28 C -0.185 4.185 29 C -0.027 4.027 30 O -0.321 6.321 31 C -0.008 4.008 32 H 0.112 0.888 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.099 0.901 36 H 0.045 0.955 37 H 0.241 0.759 38 H 0.076 0.924 39 H 0.111 0.889 40 H 0.152 0.848 41 H 0.164 0.836 42 H 0.157 0.843 43 H 0.124 0.876 44 H 0.091 0.909 45 H 0.097 0.903 46 H 0.116 0.884 47 H 0.084 0.916 48 H 0.075 0.925 49 H 0.125 0.875 50 H 0.099 0.901 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.463 5.398 13.981 15.381 hybrid contribution -0.868 -0.970 -0.670 1.464 sum -4.331 4.428 13.311 14.681 Atomic orbital electron populations 1.22860 0.80197 1.03461 1.00325 1.87878 1.20780 1.27649 1.95413 1.22897 0.93767 0.85029 1.00287 1.21018 0.92326 0.97775 0.83656 0.89249 1.45860 1.68638 1.11880 1.09480 1.21321 0.74724 0.86000 0.85948 1.90535 1.54462 1.16549 1.85771 1.17991 0.99206 0.92234 0.87430 0.91753 1.20640 0.92035 1.02195 1.39966 0.93306 1.25546 0.96716 0.99836 0.94570 1.70008 1.16164 1.27769 1.40188 0.85731 0.79240 0.78808 0.78662 1.20837 1.19087 1.20387 1.20107 0.92973 0.93591 0.96819 1.20819 0.97618 0.96836 0.97619 1.21312 0.98624 0.98016 0.97397 1.21259 0.92118 1.01367 1.01435 1.21300 0.99668 0.96523 0.97216 1.21133 0.96719 0.98865 0.99333 1.21835 0.96459 1.00412 0.94413 0.89911 1.21631 1.02011 0.99022 0.92266 1.22136 0.96074 1.01068 0.99189 1.22841 0.95370 0.98957 0.85553 1.87932 1.80701 1.48602 1.14828 1.22534 0.93366 0.96067 0.88848 0.88825 0.92137 0.95068 0.90095 0.95471 0.75853 0.92438 0.88941 0.84761 0.83560 0.84279 0.87587 0.90887 0.90321 0.88429 0.91561 0.92452 0.87519 0.90123 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 11.01 113.37 1.25 1.89 16 2 O -0.40 -11.92 9.73 -148.98 -1.45 -13.37 16 3 C 0.06 1.68 5.30 71.98 0.38 2.06 16 4 C 0.16 4.77 1.95 44.99 0.09 4.85 16 5 H 0.09 2.82 7.58 -2.39 -0.02 2.80 16 6 N -0.71 -26.81 4.24 -442.54 -1.88 -28.69 16 7 C 0.53 24.07 7.01 87.66 0.61 24.69 16 8 O -0.59 -28.77 15.12 -3.02 -0.05 -28.82 16 9 C 0.05 2.61 2.37 -13.03 -0.03 2.58 16 10 H 0.06 3.44 7.13 -2.38 -0.02 3.42 16 11 C -0.51 -26.61 7.43 25.60 0.19 -26.42 16 12 H 0.05 2.61 7.82 -2.91 -0.02 2.59 16 13 C 0.04 1.85 5.45 84.65 0.46 2.31 16 14 N -0.90 -49.47 12.84 21.45 0.28 -49.20 16 15 Si 0.95 42.18 29.54 68.60 2.03 44.21 16 16 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 17 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 19 C -0.03 -1.65 4.29 -19.87 -0.09 -1.74 16 20 C -0.11 -5.12 8.36 22.27 0.19 -4.93 16 21 C -0.14 -5.23 10.05 22.27 0.22 -5.00 16 22 C -0.14 -5.02 10.05 22.27 0.22 -4.80 16 23 C -0.13 -4.83 10.05 22.27 0.22 -4.61 16 24 C -0.14 -6.38 9.67 22.27 0.22 -6.16 16 25 C -0.11 -2.82 1.85 -10.70 -0.02 -2.84 16 26 H 0.08 2.34 7.49 -2.39 -0.02 2.32 16 27 C -0.11 -2.08 4.92 30.71 0.15 -1.93 16 28 C -0.15 -2.36 6.14 30.69 0.19 -2.17 16 29 C 0.05 0.90 6.84 72.01 0.49 1.39 16 30 O -0.40 -10.66 10.77 -148.98 -1.60 -12.27 16 31 C 0.07 1.85 5.91 72.02 0.43 2.28 16 32 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 33 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.08 1.81 6.84 -2.39 -0.02 1.80 16 36 H 0.03 0.94 8.14 -2.39 -0.02 0.93 16 37 H 0.41 15.65 8.16 -92.71 -0.76 14.90 16 38 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 39 H 0.09 4.45 7.86 -2.91 -0.02 4.43 16 40 H 0.13 4.27 8.06 -2.91 -0.02 4.25 16 41 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 42 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 43 H 0.11 4.70 7.96 -2.91 -0.02 4.68 16 44 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.08 1.36 6.79 -2.39 -0.02 1.34 16 46 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 50 H 0.08 2.45 7.40 -2.39 -0.02 2.44 16 51 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -65.30 411.13 2.66 -62.64 By element: Atomic # 1 Polarization: 43.87 SS G_CDS: 0.16 Total: 44.03 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: 5.18 Total: -18.55 kcal Atomic # 7 Polarization: -76.28 SS G_CDS: -1.60 Total: -77.88 kcal Atomic # 8 Polarization: -51.35 SS G_CDS: -3.10 Total: -54.45 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -65.30 2.66 -62.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361630670.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.311 kcal (2) G-P(sol) polarization free energy of solvation -65.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds