Wall clock time and date at job start Wed Apr 1 2020 05:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99643 * 2 1 4 4 C 1.53001 * 109.46543 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.46818 * 184.99967 * 4 3 2 6 6 N 1.46499 * 109.47118 * 65.00256 * 4 3 2 7 7 C 1.34782 * 120.00169 * 84.99750 * 6 4 3 8 8 O 1.21282 * 119.99764 * 359.97438 * 7 6 4 9 9 C 1.50694 * 119.99954 * 179.97438 * 7 6 4 10 10 H 1.08998 * 109.47377 * 322.43790 * 9 7 6 11 11 C 1.50697 * 109.47150 * 82.43968 * 9 7 6 12 12 H 1.08002 * 119.99860 * 54.78004 * 11 9 7 13 13 C 1.37876 * 120.00320 * 234.77818 * 11 9 7 14 14 N 1.31515 * 120.00156 * 175.91632 * 13 11 9 15 15 Si 1.86798 * 119.99862 * 355.92109 * 13 11 9 16 16 H 1.48499 * 109.47177 * 83.72953 * 15 13 11 17 17 H 1.48502 * 109.47393 * 203.73036 * 15 13 11 18 18 H 1.48499 * 109.47030 * 323.72957 * 15 13 11 19 19 C 1.50695 * 109.47230 * 202.43976 * 9 7 6 20 20 C 1.38239 * 120.00411 * 112.25372 * 19 9 7 21 21 C 1.38231 * 120.00355 * 180.25678 * 20 19 9 22 22 C 1.38229 * 119.99881 * 359.53360 * 21 20 19 23 23 C 1.38236 * 119.99984 * 0.42660 * 22 21 20 24 24 C 1.38235 * 120.00285 * 359.80754 * 23 22 21 25 25 C 1.53002 * 109.47497 * 304.99840 * 4 3 2 26 26 H 1.08993 * 109.52016 * 60.00098 * 25 4 3 27 27 C 1.53171 * 109.52118 * 180.12953 * 25 4 3 28 28 C 1.53174 * 109.03388 * 176.88843 * 27 25 4 29 29 C 1.53097 * 109.16443 * 303.01745 * 28 27 25 30 30 O 1.42894 * 109.41200 * 57.60709 * 29 28 27 31 31 C 1.42907 * 114.15986 * 298.87573 * 30 29 28 32 32 H 1.09007 * 109.47322 * 299.99781 * 1 2 3 33 33 H 1.08999 * 109.47746 * 59.99930 * 1 2 3 34 34 H 1.09000 * 109.47231 * 180.02562 * 1 2 3 35 35 H 1.08996 * 109.47189 * 60.00197 * 3 2 1 36 36 H 1.08999 * 109.47443 * 299.99758 * 3 2 1 37 37 H 0.97000 * 119.99631 * 264.99062 * 6 4 3 38 38 H 0.97002 * 120.00176 * 180.02562 * 14 13 11 39 39 H 1.08006 * 119.99719 * 359.97438 * 20 19 9 40 40 H 1.08002 * 119.99968 * 179.72664 * 21 20 19 41 41 H 1.08003 * 120.00255 * 180.21208 * 22 21 20 42 42 H 1.08006 * 119.99633 * 179.78295 * 23 22 21 43 43 H 1.07997 * 120.00391 * 179.97438 * 24 23 22 44 44 H 1.09001 * 109.54533 * 296.75073 * 27 25 4 45 45 H 1.08997 * 109.54569 * 57.02144 * 27 25 4 46 46 H 1.08999 * 109.52561 * 62.92680 * 28 27 25 47 47 H 1.09007 * 109.52625 * 183.11504 * 28 27 25 48 48 H 1.09002 * 109.48021 * 177.59295 * 29 28 27 49 49 H 1.09006 * 109.47666 * 297.61338 * 29 28 27 50 50 H 1.08998 * 109.42674 * 301.11537 * 31 30 29 51 51 H 1.08997 * 109.54067 * 181.07716 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9784 2.1766 0.0902 6 7 3.9766 0.5640 -1.2509 7 6 4.1662 1.3223 -2.3489 8 8 3.9711 2.5183 -2.3010 9 6 4.6206 0.6839 -3.6361 10 1 5.3369 -0.1077 -3.4161 11 6 3.4315 0.0999 -4.3544 12 1 2.5777 0.7218 -4.5795 13 6 3.4334 -1.2284 -4.7241 14 7 2.3650 -1.7582 -5.2785 15 14 4.9535 -2.2755 -4.4374 16 1 4.9488 -2.7833 -3.0419 17 1 4.9503 -3.4219 -5.3813 18 1 6.1700 -1.4536 -4.6609 19 6 5.2739 1.7238 -4.5094 20 6 6.6303 1.6568 -4.7675 21 6 7.2305 2.6137 -5.5642 22 6 6.4726 3.6324 -6.1108 23 6 5.1160 3.6990 -5.8534 24 6 4.5166 2.7448 -5.0527 25 6 3.9780 0.3198 1.1826 26 1 3.5355 -0.6723 1.0939 27 6 5.5051 0.2008 1.1862 28 6 5.9408 -0.6011 2.4163 29 6 5.4086 0.0844 3.6775 30 8 3.9860 0.1909 3.5958 31 6 3.5202 0.9690 2.4913 32 1 -0.3634 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 -0.3634 -1.0277 0.0005 35 1 1.6885 1.8464 0.8900 36 1 1.6885 1.8465 -0.8900 37 1 4.1323 -0.3926 -1.2892 38 1 2.3662 -2.6928 -5.5382 39 1 7.2220 0.8592 -4.3429 40 1 8.2910 2.5638 -5.7622 41 1 6.9408 4.3782 -6.7361 42 1 4.5245 4.4970 -6.2776 43 1 3.4569 2.7971 -4.8513 44 1 5.8330 -0.3119 0.2819 45 1 5.9484 1.1958 1.2238 46 1 5.5380 -1.6120 2.3536 47 1 7.0293 -0.6437 2.4567 48 1 5.6793 -0.5051 4.5535 49 1 5.8437 1.0804 3.7610 50 1 3.9295 1.9769 2.5597 51 1 2.4315 1.0165 2.5122 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361630672.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:39 Heat of formation + Delta-G solvation = -116.912888 kcal Electronic energy + Delta-G solvation = -32196.029995 eV Core-core repulsion = 28059.820741 eV Total energy + Delta-G solvation = -4136.209254 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.06553 -39.10000 -38.08638 -37.33141 -35.18375 -33.59961 -32.94280 -31.65731 -31.35682 -30.13761 -28.68818 -27.65099 -25.97223 -25.02730 -24.16545 -23.50776 -21.86306 -21.62344 -20.58704 -20.11262 -19.25701 -17.18960 -16.78740 -16.63128 -16.09984 -15.92115 -15.81766 -15.46276 -15.29065 -15.00284 -14.73155 -14.60215 -14.27191 -14.02335 -13.73961 -13.44818 -13.22071 -12.95344 -12.73194 -12.65895 -12.62181 -12.39889 -12.12417 -11.93822 -11.83533 -11.75340 -11.39840 -11.22038 -11.12637 -11.06811 -10.88743 -10.48592 -10.44642 -10.36156 -10.14673 -10.00285 -9.59545 -9.51595 -9.39226 -9.01835 -8.67710 -8.43091 -8.14227 -7.82472 -6.29294 -4.31504 2.13386 2.20641 3.10867 3.21874 3.23176 3.59978 3.71029 3.83047 4.11087 4.20512 4.60114 4.62739 4.69410 4.80317 4.94081 5.05554 5.06727 5.22551 5.26103 5.37758 5.40202 5.49810 5.53700 5.57061 5.57811 5.59732 5.63301 5.68653 5.73232 5.73561 5.88958 5.91485 5.94737 5.99713 6.02126 6.09873 6.17678 6.20553 6.34348 6.40459 6.41495 6.73147 6.85592 7.06755 7.10330 7.16035 7.25478 7.29634 7.39120 7.59697 7.78970 8.17645 8.33781 8.73783 9.12235 9.28115 10.82294 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.009570 B = 0.003931 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2925.155961 B = 7120.993881 C = 7763.555587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.378 6.378 3 C 0.048 3.952 4 C 0.160 3.840 5 H 0.096 0.904 6 N -0.720 5.720 7 C 0.534 3.466 8 O -0.563 6.563 9 C 0.033 3.967 10 H 0.059 0.941 11 C -0.502 4.502 12 H 0.082 0.918 13 C 0.084 3.916 14 N -0.880 5.880 15 Si 0.866 3.134 16 H -0.270 1.270 17 H -0.284 1.284 18 H -0.261 1.261 19 C -0.030 4.030 20 C -0.134 4.134 21 C -0.131 4.131 22 C -0.142 4.142 23 C -0.132 4.132 24 C -0.068 4.068 25 C -0.127 4.127 26 H 0.096 0.904 27 C -0.118 4.118 28 C -0.155 4.155 29 C 0.060 3.940 30 O -0.381 6.381 31 C 0.071 3.929 32 H 0.034 0.966 33 H 0.042 0.958 34 H 0.083 0.917 35 H 0.048 0.952 36 H 0.060 0.940 37 H 0.401 0.599 38 H 0.269 0.731 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.120 0.880 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.090 0.910 49 H 0.048 0.952 50 H 0.050 0.950 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.015 3.763 13.158 14.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.297 6.297 3 C -0.030 4.030 4 C 0.054 3.946 5 H 0.114 0.886 6 N -0.371 5.371 7 C 0.323 3.677 8 O -0.441 6.441 9 C 0.011 3.989 10 H 0.077 0.923 11 C -0.540 4.540 12 H 0.100 0.900 13 C -0.121 4.121 14 N -0.516 5.516 15 Si 0.693 3.307 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.186 1.186 19 C -0.031 4.031 20 C -0.152 4.152 21 C -0.149 4.149 22 C -0.160 4.160 23 C -0.150 4.150 24 C -0.087 4.087 25 C -0.146 4.146 26 H 0.114 0.886 27 C -0.156 4.156 28 C -0.193 4.193 29 C -0.017 4.017 30 O -0.300 6.300 31 C -0.006 4.006 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.101 0.899 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.235 0.765 38 H 0.079 0.921 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.138 0.862 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.091 0.909 47 H 0.090 0.910 48 H 0.108 0.892 49 H 0.066 0.934 50 H 0.068 0.932 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.766 4.184 13.230 14.672 hybrid contribution 0.649 -0.873 -0.336 1.138 sum 5.415 3.311 12.894 14.372 Atomic orbital electron populations 1.22681 0.81489 1.02525 0.99507 1.87892 1.19257 1.27244 1.95290 1.23036 0.94271 0.85319 1.00402 1.20813 0.91735 0.97719 0.84296 0.88635 1.45905 1.70159 1.11708 1.09376 1.21498 0.75050 0.86478 0.84626 1.90560 1.53224 1.15587 1.84748 1.18348 0.97679 0.93441 0.89440 0.92316 1.20498 1.00538 0.95529 1.37390 0.89955 1.25031 0.95743 0.97286 0.94062 1.69850 1.27823 1.13823 1.40093 0.87005 0.84349 0.80502 0.78884 1.19555 1.20955 1.18588 1.19990 0.92186 0.94453 0.96494 1.21000 0.94645 0.99093 1.00466 1.20876 0.98866 0.95844 0.99339 1.20875 0.94406 0.99055 1.01711 1.21057 0.94818 0.99359 0.99747 1.20917 1.00083 0.93008 0.94646 1.21982 0.96339 1.01869 0.94409 0.88587 1.21638 0.94917 1.00665 0.98344 1.22194 1.01118 1.00541 0.95467 1.22576 0.81558 0.99707 0.97886 1.87932 1.21232 1.73198 1.47598 1.22593 0.99862 0.93249 0.84885 0.94784 0.93979 0.89862 0.93357 0.92200 0.76494 0.92115 0.87290 0.87297 0.87366 0.87141 0.86189 0.90911 0.91775 0.90934 0.90983 0.89160 0.93353 0.93223 0.88591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.58 16 2 O -0.38 -6.08 9.77 -35.23 -0.34 -6.42 16 3 C 0.05 0.72 5.24 37.16 0.19 0.92 16 4 C 0.16 2.40 1.95 -67.93 -0.13 2.27 16 5 H 0.10 1.46 7.58 -51.92 -0.39 1.07 16 6 N -0.72 -12.93 4.39 -53.80 -0.24 -13.17 16 7 C 0.53 11.36 6.90 -10.99 -0.08 11.29 16 8 O -0.56 -12.95 14.89 5.56 0.08 -12.86 16 9 C 0.03 0.74 2.22 -94.08 -0.21 0.53 16 10 H 0.06 1.27 4.57 -51.93 -0.24 1.04 16 11 C -0.50 -13.14 8.24 -34.44 -0.28 -13.42 16 12 H 0.08 2.41 7.69 -52.49 -0.40 2.01 16 13 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 14 N -0.88 -25.10 13.96 55.43 0.77 -24.33 16 15 Si 0.87 19.58 26.93 -169.99 -4.58 15.00 16 16 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.26 -5.67 6.81 56.52 0.39 -5.29 16 19 C -0.03 -0.67 4.53 -104.62 -0.47 -1.14 16 20 C -0.13 -2.64 9.67 -39.58 -0.38 -3.02 16 21 C -0.13 -2.29 10.05 -39.59 -0.40 -2.68 16 22 C -0.14 -2.43 10.05 -39.59 -0.40 -2.82 16 23 C -0.13 -2.45 10.05 -39.58 -0.40 -2.84 16 24 C -0.07 -1.48 8.05 -39.58 -0.32 -1.80 16 25 C -0.13 -1.60 1.82 -90.48 -0.16 -1.76 16 26 H 0.10 1.36 7.56 -51.93 -0.39 0.96 16 27 C -0.12 -1.37 5.11 -26.55 -0.14 -1.51 16 28 C -0.16 -1.54 6.14 -26.59 -0.16 -1.70 16 29 C 0.06 0.58 6.84 37.21 0.25 0.83 16 30 O -0.38 -4.64 10.76 -35.23 -0.38 -5.02 16 31 C 0.07 0.81 5.71 37.21 0.21 1.03 16 32 H 0.03 0.37 8.14 -51.92 -0.42 -0.05 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.05 0.60 6.77 -51.93 -0.35 0.24 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.40 7.09 8.41 -40.82 -0.34 6.75 16 38 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.11 1.99 7.96 -52.48 -0.42 1.57 16 40 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.11 1.51 8.06 -52.48 -0.42 1.08 16 42 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 43 H 0.12 2.74 7.44 -52.49 -0.39 2.35 16 44 H 0.07 0.90 7.57 -51.93 -0.39 0.51 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 50 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 51 H 0.10 1.07 6.69 -51.93 -0.35 0.72 16 LS Contribution 406.91 15.07 6.13 6.13 Total: -1.00 -30.63 406.91 -8.72 -39.35 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: -8.32 Total: 13.48 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -1.86 Total: -12.16 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.54 Total: -37.50 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.64 Total: -24.31 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.58 Total: 15.00 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -30.63 -8.72 -39.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361630672.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.559 kcal (2) G-P(sol) polarization free energy of solvation -30.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds