Wall clock time and date at job start Wed Apr 1 2020 05:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99643 * 2 1 4 4 C 1.53001 * 109.46543 * 179.97438 * 3 2 1 5 5 H 1.09008 * 109.46818 * 184.99967 * 4 3 2 6 6 N 1.46499 * 109.47118 * 65.00256 * 4 3 2 7 7 C 1.34782 * 120.00169 * 84.99750 * 6 4 3 8 8 O 1.21282 * 119.99764 * 359.97438 * 7 6 4 9 9 C 1.50694 * 119.99954 * 179.97438 * 7 6 4 10 10 H 1.08998 * 109.47377 * 322.43790 * 9 7 6 11 11 C 1.50697 * 109.47150 * 82.43968 * 9 7 6 12 12 H 1.08002 * 119.99860 * 54.78004 * 11 9 7 13 13 C 1.37876 * 120.00320 * 234.77818 * 11 9 7 14 14 N 1.31515 * 120.00156 * 175.91632 * 13 11 9 15 15 Si 1.86798 * 119.99862 * 355.92109 * 13 11 9 16 16 H 1.48499 * 109.47177 * 83.72953 * 15 13 11 17 17 H 1.48502 * 109.47393 * 203.73036 * 15 13 11 18 18 H 1.48499 * 109.47030 * 323.72957 * 15 13 11 19 19 C 1.50695 * 109.47230 * 202.43976 * 9 7 6 20 20 C 1.38239 * 120.00411 * 112.25372 * 19 9 7 21 21 C 1.38231 * 120.00355 * 180.25678 * 20 19 9 22 22 C 1.38229 * 119.99881 * 359.53360 * 21 20 19 23 23 C 1.38236 * 119.99984 * 0.42660 * 22 21 20 24 24 C 1.38235 * 120.00285 * 359.80754 * 23 22 21 25 25 C 1.53002 * 109.47497 * 304.99840 * 4 3 2 26 26 H 1.08993 * 109.52016 * 60.00098 * 25 4 3 27 27 C 1.53171 * 109.52118 * 180.12953 * 25 4 3 28 28 C 1.53174 * 109.03388 * 176.88843 * 27 25 4 29 29 C 1.53097 * 109.16443 * 303.01745 * 28 27 25 30 30 O 1.42894 * 109.41200 * 57.60709 * 29 28 27 31 31 C 1.42907 * 114.15986 * 298.87573 * 30 29 28 32 32 H 1.09007 * 109.47322 * 299.99781 * 1 2 3 33 33 H 1.08999 * 109.47746 * 59.99930 * 1 2 3 34 34 H 1.09000 * 109.47231 * 180.02562 * 1 2 3 35 35 H 1.08996 * 109.47189 * 60.00197 * 3 2 1 36 36 H 1.08999 * 109.47443 * 299.99758 * 3 2 1 37 37 H 0.97000 * 119.99631 * 264.99062 * 6 4 3 38 38 H 0.97002 * 120.00176 * 180.02562 * 14 13 11 39 39 H 1.08006 * 119.99719 * 359.97438 * 20 19 9 40 40 H 1.08002 * 119.99968 * 179.72664 * 21 20 19 41 41 H 1.08003 * 120.00255 * 180.21208 * 22 21 20 42 42 H 1.08006 * 119.99633 * 179.78295 * 23 22 21 43 43 H 1.07997 * 120.00391 * 179.97438 * 24 23 22 44 44 H 1.09001 * 109.54533 * 296.75073 * 27 25 4 45 45 H 1.08997 * 109.54569 * 57.02144 * 27 25 4 46 46 H 1.08999 * 109.52561 * 62.92680 * 28 27 25 47 47 H 1.09007 * 109.52625 * 183.11504 * 28 27 25 48 48 H 1.09002 * 109.48021 * 177.59295 * 29 28 27 49 49 H 1.09006 * 109.47666 * 297.61338 * 29 28 27 50 50 H 1.08998 * 109.42674 * 301.11537 * 31 30 29 51 51 H 1.08997 * 109.54067 * 181.07716 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9784 2.1766 0.0902 6 7 3.9766 0.5640 -1.2509 7 6 4.1662 1.3223 -2.3489 8 8 3.9711 2.5183 -2.3010 9 6 4.6206 0.6839 -3.6361 10 1 5.3369 -0.1077 -3.4161 11 6 3.4315 0.0999 -4.3544 12 1 2.5777 0.7218 -4.5795 13 6 3.4334 -1.2284 -4.7241 14 7 2.3650 -1.7582 -5.2785 15 14 4.9535 -2.2755 -4.4374 16 1 4.9488 -2.7833 -3.0419 17 1 4.9503 -3.4219 -5.3813 18 1 6.1700 -1.4536 -4.6609 19 6 5.2739 1.7238 -4.5094 20 6 6.6303 1.6568 -4.7675 21 6 7.2305 2.6137 -5.5642 22 6 6.4726 3.6324 -6.1108 23 6 5.1160 3.6990 -5.8534 24 6 4.5166 2.7448 -5.0527 25 6 3.9780 0.3198 1.1826 26 1 3.5355 -0.6723 1.0939 27 6 5.5051 0.2008 1.1862 28 6 5.9408 -0.6011 2.4163 29 6 5.4086 0.0844 3.6775 30 8 3.9860 0.1909 3.5958 31 6 3.5202 0.9690 2.4913 32 1 -0.3634 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 -0.3634 -1.0277 0.0005 35 1 1.6885 1.8464 0.8900 36 1 1.6885 1.8465 -0.8900 37 1 4.1323 -0.3926 -1.2892 38 1 2.3662 -2.6928 -5.5382 39 1 7.2220 0.8592 -4.3429 40 1 8.2910 2.5638 -5.7622 41 1 6.9408 4.3782 -6.7361 42 1 4.5245 4.4970 -6.2776 43 1 3.4569 2.7971 -4.8513 44 1 5.8330 -0.3119 0.2819 45 1 5.9484 1.1958 1.2238 46 1 5.5380 -1.6120 2.3536 47 1 7.0293 -0.6437 2.4567 48 1 5.6793 -0.5051 4.5535 49 1 5.8437 1.0804 3.7610 50 1 3.9295 1.9769 2.5597 51 1 2.4315 1.0165 2.5122 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361630672.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:38 Heat of formation + Delta-G solvation = -136.532373 kcal Electronic energy + Delta-G solvation = -32196.880760 eV Core-core repulsion = 28059.820741 eV Total energy + Delta-G solvation = -4137.060019 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.36395 -40.41736 -39.42315 -38.66630 -36.43776 -35.48996 -34.00222 -33.40539 -32.58838 -31.61941 -29.91181 -29.22993 -27.13410 -26.10165 -25.42462 -25.01245 -23.36242 -22.91826 -21.82872 -21.29329 -20.75027 -19.14688 -18.13111 -17.95967 -17.49670 -17.20027 -16.87531 -16.63651 -16.52489 -16.32608 -16.22961 -15.76434 -15.52984 -15.43168 -15.12920 -14.86397 -14.72049 -14.43854 -14.16706 -14.09030 -13.75916 -13.57610 -13.48027 -13.38004 -13.16136 -12.90302 -12.83493 -12.76429 -12.45847 -12.09980 -12.05608 -11.92536 -11.89132 -11.69320 -11.45865 -11.41656 -11.24235 -10.91113 -10.68894 -10.57182 -10.36247 -9.94401 -9.63440 -9.36783 -8.35597 -6.43497 0.64053 0.71140 1.31461 1.36796 1.45188 1.88820 2.28849 2.35760 2.87634 2.93465 2.99878 3.16644 3.58902 3.73569 3.88599 4.05002 4.05397 4.14057 4.20031 4.23788 4.25268 4.27232 4.34461 4.38332 4.42238 4.46936 4.47888 4.49286 4.55714 4.64402 4.66678 4.73885 4.78989 4.82677 4.84367 4.89765 4.95867 5.05239 5.12574 5.20799 5.22945 5.33464 5.38834 5.40413 5.63165 5.70524 5.75547 5.95522 6.17711 6.19849 6.26240 6.31557 6.58133 6.69624 7.20014 7.45723 8.80005 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.009570 B = 0.003931 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2925.155961 B = 7120.993881 C = 7763.555587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.398 6.398 3 C 0.051 3.949 4 C 0.159 3.841 5 H 0.095 0.905 6 N -0.711 5.711 7 C 0.532 3.468 8 O -0.585 6.585 9 C 0.035 3.965 10 H 0.071 0.929 11 C -0.500 4.500 12 H 0.027 0.973 13 C 0.030 3.970 14 N -0.932 5.932 15 Si 0.927 3.073 16 H -0.246 1.246 17 H -0.286 1.286 18 H -0.241 1.241 19 C -0.061 4.061 20 C -0.146 4.146 21 C -0.124 4.124 22 C -0.134 4.134 23 C -0.136 4.136 24 C -0.100 4.100 25 C -0.115 4.115 26 H 0.081 0.919 27 C -0.119 4.119 28 C -0.150 4.150 29 C 0.054 3.946 30 O -0.397 6.397 31 C 0.074 3.926 32 H 0.063 0.937 33 H 0.025 0.975 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.023 0.977 37 H 0.402 0.598 38 H 0.270 0.730 39 H 0.125 0.875 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.132 0.868 43 H 0.084 0.916 44 H 0.062 0.938 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.091 0.909 48 H 0.108 0.892 49 H 0.060 0.940 50 H 0.063 0.937 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.513 4.002 14.655 17.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.317 6.317 3 C -0.027 4.027 4 C 0.054 3.946 5 H 0.113 0.887 6 N -0.361 5.361 7 C 0.321 3.679 8 O -0.466 6.466 9 C 0.013 3.987 10 H 0.089 0.911 11 C -0.538 4.538 12 H 0.046 0.954 13 C -0.170 4.170 14 N -0.570 5.570 15 Si 0.749 3.251 16 H -0.170 1.170 17 H -0.212 1.212 18 H -0.165 1.165 19 C -0.062 4.062 20 C -0.164 4.164 21 C -0.141 4.141 22 C -0.152 4.152 23 C -0.154 4.154 24 C -0.118 4.118 25 C -0.134 4.134 26 H 0.099 0.901 27 C -0.157 4.157 28 C -0.188 4.188 29 C -0.022 4.022 30 O -0.316 6.316 31 C -0.003 4.003 32 H 0.082 0.918 33 H 0.044 0.956 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.042 0.958 37 H 0.237 0.763 38 H 0.079 0.921 39 H 0.143 0.857 40 H 0.168 0.832 41 H 0.168 0.832 42 H 0.149 0.851 43 H 0.103 0.897 44 H 0.081 0.919 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.109 0.891 48 H 0.126 0.874 49 H 0.078 0.922 50 H 0.081 0.919 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.265 4.429 14.766 17.492 hybrid contribution -0.505 -0.821 -0.828 1.271 sum 7.760 3.608 13.938 16.356 Atomic orbital electron populations 1.22837 0.80229 1.03446 1.00156 1.87856 1.20771 1.27678 1.95398 1.23003 0.94371 0.85106 1.00233 1.21001 0.91683 0.98042 0.83831 0.88743 1.45849 1.69017 1.11539 1.09707 1.21256 0.75119 0.86315 0.85181 1.90534 1.54306 1.16544 1.85210 1.18270 0.96336 0.94181 0.89898 0.91132 1.20431 1.00395 0.95200 1.37731 0.95441 1.25884 0.99009 0.98485 0.93615 1.70010 1.30464 1.14331 1.42204 0.86020 0.80612 0.78487 0.79948 1.16979 1.21247 1.16491 1.20022 0.93742 0.94939 0.97520 1.21262 0.93588 1.00431 1.01081 1.21361 1.00882 0.94476 0.97411 1.21358 0.93377 0.99496 1.00933 1.21346 0.96284 0.98922 0.98863 1.20825 0.98737 0.95092 0.97142 1.21860 0.97191 1.00473 0.93884 0.90072 1.21651 0.93909 1.01169 0.98966 1.22168 1.02278 0.99735 0.94602 1.22782 0.80321 1.00731 0.98368 1.87918 1.22817 1.73372 1.47447 1.22567 1.00135 0.93653 0.83923 0.91803 0.95610 0.88887 0.89950 0.95848 0.76309 0.92066 0.85697 0.83181 0.83188 0.85056 0.89744 0.91911 0.91358 0.91626 0.89084 0.87377 0.92181 0.91876 0.88406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.05 16 2 O -0.40 -13.06 9.77 -148.98 -1.46 -14.52 16 3 C 0.05 1.57 5.24 71.98 0.38 1.95 16 4 C 0.16 4.81 1.95 44.99 0.09 4.90 16 5 H 0.09 2.90 7.58 -2.38 -0.02 2.88 16 6 N -0.71 -26.21 4.39 -442.52 -1.94 -28.15 16 7 C 0.53 23.62 6.90 87.65 0.60 24.23 16 8 O -0.59 -28.35 14.89 -3.04 -0.05 -28.39 16 9 C 0.03 1.62 2.22 -13.04 -0.03 1.59 16 10 H 0.07 3.04 4.57 -2.39 -0.01 3.03 16 11 C -0.50 -27.85 8.24 25.60 0.21 -27.64 16 12 H 0.03 1.78 7.69 -2.91 -0.02 1.75 16 13 C 0.03 1.65 5.47 84.65 0.46 2.12 16 14 N -0.93 -55.95 13.96 21.45 0.30 -55.65 16 15 Si 0.93 40.30 26.93 68.60 1.85 42.14 16 16 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 17 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 18 H -0.24 -9.66 6.81 99.48 0.68 -8.98 16 19 C -0.06 -2.75 4.53 -19.87 -0.09 -2.84 16 20 C -0.15 -5.46 9.67 22.27 0.22 -5.25 16 21 C -0.12 -3.84 10.05 22.27 0.22 -3.62 16 22 C -0.13 -4.11 10.05 22.27 0.22 -3.89 16 23 C -0.14 -4.98 10.05 22.27 0.22 -4.75 16 24 C -0.10 -4.51 8.05 22.27 0.18 -4.33 16 25 C -0.11 -2.79 1.82 -10.70 -0.02 -2.81 16 26 H 0.08 2.25 7.56 -2.39 -0.02 2.23 16 27 C -0.12 -2.58 5.11 30.71 0.16 -2.43 16 28 C -0.15 -2.61 6.14 30.68 0.19 -2.43 16 29 C 0.05 0.90 6.84 72.01 0.49 1.39 16 30 O -0.40 -8.79 10.76 -148.98 -1.60 -10.39 16 31 C 0.07 1.56 5.71 72.01 0.41 1.98 16 32 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.08 1.97 6.77 -2.39 -0.02 1.95 16 36 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.40 14.45 8.41 -92.71 -0.78 13.67 16 38 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 39 H 0.13 4.18 7.96 -2.91 -0.02 4.16 16 40 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 41 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 42 H 0.13 4.09 8.06 -2.91 -0.02 4.06 16 43 H 0.08 4.29 7.44 -2.91 -0.02 4.27 16 44 H 0.06 1.48 7.57 -2.39 -0.02 1.46 16 45 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 48 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 50 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 51 H 0.10 1.99 6.69 -2.39 -0.02 1.98 16 Total: -1.00 -71.88 406.91 2.38 -69.50 By element: Atomic # 1 Polarization: 45.12 SS G_CDS: 0.11 Total: 45.23 kcal Atomic # 6 Polarization: -24.94 SS G_CDS: 5.17 Total: -19.77 kcal Atomic # 7 Polarization: -82.16 SS G_CDS: -1.64 Total: -83.80 kcal Atomic # 8 Polarization: -50.19 SS G_CDS: -3.10 Total: -53.30 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 1.85 Total: 42.14 kcal Total: -71.88 2.38 -69.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361630672.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.036 kcal (2) G-P(sol) polarization free energy of solvation -71.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds