Wall clock time and date at job start Wed Apr 1 2020 05:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42908 * 114.00158 * 2 1 4 4 C 1.52997 * 109.47004 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47267 * 185.41798 * 4 3 2 6 6 N 1.46495 * 109.47827 * 65.41173 * 4 3 2 7 7 C 1.34778 * 119.99636 * 84.99745 * 6 4 3 8 8 O 1.21274 * 120.00175 * 0.02562 * 7 6 4 9 9 C 1.50708 * 119.99862 * 180.02562 * 7 6 4 10 10 H 1.08992 * 109.47114 * 59.99533 * 9 7 6 11 11 C 1.50703 * 109.46530 * 300.00254 * 9 7 6 12 12 H 1.08000 * 120.00489 * 125.73293 * 11 9 7 13 13 C 1.37883 * 120.00233 * 305.72111 * 11 9 7 14 14 N 1.31515 * 119.99624 * 5.17973 * 13 11 9 15 15 Si 1.86796 * 120.00459 * 185.17525 * 13 11 9 16 16 H 1.48502 * 109.46752 * 0.02562 * 15 13 11 17 17 H 1.48494 * 109.47356 * 120.00460 * 15 13 11 18 18 H 1.48501 * 109.47127 * 240.00505 * 15 13 11 19 19 C 1.50689 * 109.47113 * 180.02562 * 9 7 6 20 20 C 1.38240 * 120.00144 * 294.84292 * 19 9 7 21 21 C 1.38233 * 120.00056 * 179.79355 * 20 19 9 22 22 C 1.38234 * 120.00394 * 0.43417 * 21 20 19 23 23 C 1.38242 * 119.99830 * 359.81599 * 22 21 20 24 24 C 1.38235 * 120.00310 * 115.11749 * 19 9 7 25 25 C 1.53014 * 109.46931 * 305.41059 * 4 3 2 26 26 H 1.08992 * 109.51837 * 55.30232 * 25 4 3 27 27 C 1.53178 * 109.52032 * 295.17529 * 25 4 3 28 28 C 1.53177 * 109.03021 * 183.11450 * 27 25 4 29 29 C 1.53088 * 109.16874 * 56.98122 * 28 27 25 30 30 O 1.42907 * 109.41237 * 302.39090 * 29 28 27 31 31 C 1.42904 * 114.09957 * 61.15935 * 30 29 28 32 32 H 1.09008 * 109.47229 * 300.00560 * 1 2 3 33 33 H 1.09000 * 109.47260 * 59.99927 * 1 2 3 34 34 H 1.08995 * 109.47322 * 180.02562 * 1 2 3 35 35 H 1.08992 * 109.46916 * 60.00128 * 3 2 1 36 36 H 1.09000 * 109.46703 * 299.99437 * 3 2 1 37 37 H 0.97000 * 120.00563 * 265.00549 * 6 4 3 38 38 H 0.96997 * 120.00248 * 179.97438 * 14 13 11 39 39 H 1.08004 * 119.99403 * 359.97438 * 20 19 9 40 40 H 1.07999 * 119.99686 * 180.27695 * 21 20 19 41 41 H 1.07994 * 120.00560 * 179.84342 * 22 21 20 42 42 H 1.07996 * 120.00120 * 179.97438 * 23 22 21 43 43 H 1.08003 * 119.99627 * 359.97438 * 24 19 9 44 44 H 1.08995 * 109.54465 * 302.97867 * 27 25 4 45 45 H 1.08995 * 109.54013 * 63.25019 * 27 25 4 46 46 H 1.08997 * 109.52012 * 176.89164 * 28 27 25 47 47 H 1.09011 * 109.52250 * 297.00917 * 28 27 25 48 48 H 1.09003 * 109.47684 * 62.36760 * 29 28 27 49 49 H 1.08992 * 109.48302 * 182.39336 * 29 28 27 50 50 H 1.08998 * 109.48520 * 178.85954 * 31 30 29 51 51 H 1.08999 * 109.48361 * 58.81932 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.9785 2.1758 0.0964 6 7 3.9765 0.5734 -1.2568 7 6 4.1659 1.3399 -2.3491 8 8 3.9717 2.5356 -2.2919 9 6 4.6191 0.7111 -3.6416 10 1 3.8855 -0.0283 -3.9627 11 6 5.9516 0.0388 -3.4328 12 1 6.0780 -1.0019 -3.6925 13 6 7.0095 0.7523 -2.9105 14 7 6.8298 1.9887 -2.4998 15 14 8.6979 -0.0370 -2.7862 16 1 8.6357 -1.4243 -3.3124 17 1 9.6726 0.7508 -3.5826 18 1 9.1278 -0.0650 -1.3650 19 6 4.7546 1.7768 -4.6983 20 6 3.6364 2.4599 -5.1385 21 6 3.7613 3.4405 -6.1047 22 6 5.0032 3.7318 -6.6374 23 6 6.1208 3.0451 -6.2009 24 6 5.9964 2.0674 -5.2316 25 6 3.9783 0.3108 1.1748 26 1 3.4706 -0.6523 1.1241 27 6 3.6243 1.0075 2.4923 28 6 4.1415 0.1610 3.6595 29 6 5.6496 -0.0477 3.4996 30 8 5.9120 -0.6713 2.2408 31 6 5.4928 0.0964 1.1107 32 1 -0.3634 0.5140 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3634 -1.0276 0.0005 35 1 1.6887 1.8464 0.8899 36 1 1.6887 1.8463 -0.8901 37 1 4.1321 -0.3829 -1.3025 38 1 7.5739 2.4906 -2.1320 39 1 2.6655 2.2295 -4.7252 40 1 2.8883 3.9773 -6.4454 41 1 5.1005 4.4962 -7.3941 42 1 7.0910 3.2724 -6.6173 43 1 6.8695 1.5309 -4.8906 44 1 4.0910 1.9920 2.5210 45 1 2.5423 1.1129 2.5697 46 1 3.9427 0.6763 4.5992 47 1 3.6371 -0.8054 3.6602 48 1 6.1563 0.9165 3.5401 49 1 6.0158 -0.6849 4.3044 50 1 5.7459 -0.4372 0.1946 51 1 5.9974 1.0625 1.1200 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361630673.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:43 Heat of formation + Delta-G solvation = -108.917585 kcal Electronic energy + Delta-G solvation = -32761.792959 eV Core-core repulsion = 28625.930407 eV Total energy + Delta-G solvation = -4135.862552 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.75288 -38.72683 -37.85537 -37.10220 -34.83660 -33.66923 -32.90614 -30.94923 -30.64955 -29.64344 -28.70708 -27.20349 -25.96517 -24.99318 -23.89206 -23.44314 -21.56493 -21.22298 -20.26529 -19.82902 -18.99708 -16.96001 -16.46224 -16.22071 -15.90703 -15.73122 -15.44310 -15.15847 -14.99954 -14.78945 -14.71517 -14.41964 -13.99344 -13.77203 -13.69375 -13.19821 -12.84257 -12.78220 -12.46380 -12.39524 -12.30313 -12.08437 -11.94865 -11.74220 -11.49382 -11.35384 -11.16501 -11.06621 -10.95846 -10.74580 -10.65785 -10.48463 -10.35929 -10.05801 -10.02567 -9.71211 -9.48792 -9.34467 -9.22198 -8.62533 -8.26044 -7.91883 -7.76503 -7.39766 -6.16571 -4.29985 2.50012 2.59606 3.20157 3.31609 3.33339 3.92144 4.08886 4.21209 4.27014 4.42911 4.82670 4.93507 4.97192 5.02932 5.07040 5.10488 5.29292 5.31459 5.39577 5.47184 5.55698 5.66520 5.66798 5.70246 5.74747 5.82688 5.89998 5.92157 5.93244 5.97669 6.02662 6.05514 6.14848 6.19689 6.33967 6.44478 6.57026 6.61926 6.67261 6.83688 6.93126 7.09288 7.22464 7.30869 7.43344 7.50067 7.60777 7.64652 7.71476 7.81988 8.14849 8.27817 8.65902 8.87571 9.34917 9.78738 10.83893 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.010407 B = 0.004517 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.937372 B = 6197.674230 C = 8169.613969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.381 6.381 3 C 0.051 3.949 4 C 0.166 3.834 5 H 0.094 0.906 6 N -0.724 5.724 7 C 0.561 3.439 8 O -0.553 6.553 9 C 0.054 3.946 10 H 0.055 0.945 11 C -0.535 4.535 12 H 0.068 0.932 13 C 0.073 3.927 14 N -0.844 5.844 15 Si 0.880 3.120 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.281 1.281 19 C -0.015 4.015 20 C -0.114 4.114 21 C -0.143 4.143 22 C -0.144 4.144 23 C -0.148 4.148 24 C -0.059 4.059 25 C -0.122 4.122 26 H 0.091 0.909 27 C -0.114 4.114 28 C -0.152 4.152 29 C 0.058 3.942 30 O -0.383 6.383 31 C 0.069 3.931 32 H 0.034 0.966 33 H 0.037 0.963 34 H 0.081 0.919 35 H 0.047 0.953 36 H 0.054 0.946 37 H 0.398 0.602 38 H 0.265 0.735 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.137 0.863 44 H 0.062 0.938 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.070 0.930 48 H 0.046 0.954 49 H 0.087 0.913 50 H 0.106 0.894 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.734 -2.358 7.691 11.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.300 6.300 3 C -0.027 4.027 4 C 0.059 3.941 5 H 0.112 0.888 6 N -0.376 5.376 7 C 0.350 3.650 8 O -0.429 6.429 9 C 0.033 3.967 10 H 0.073 0.927 11 C -0.573 4.573 12 H 0.086 0.914 13 C -0.134 4.134 14 N -0.478 5.478 15 Si 0.707 3.293 16 H -0.194 1.194 17 H -0.208 1.208 18 H -0.207 1.207 19 C -0.016 4.016 20 C -0.133 4.133 21 C -0.161 4.161 22 C -0.162 4.162 23 C -0.167 4.167 24 C -0.077 4.077 25 C -0.141 4.141 26 H 0.109 0.891 27 C -0.152 4.152 28 C -0.190 4.190 29 C -0.019 4.019 30 O -0.302 6.302 31 C -0.008 4.008 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.100 0.900 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.231 0.769 38 H 0.075 0.925 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.154 0.846 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.089 0.911 48 H 0.065 0.935 49 H 0.105 0.895 50 H 0.124 0.876 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.563 -1.641 7.785 10.977 hybrid contribution 0.702 0.039 0.264 0.751 sum -6.862 -1.602 8.049 10.697 Atomic orbital electron populations 1.22671 0.82062 1.02175 0.99506 1.87891 1.18725 1.28083 1.95301 1.23092 0.95086 0.84464 1.00018 1.20667 0.90520 0.98195 0.84671 0.88793 1.45743 1.71182 1.11434 1.09278 1.20830 0.72498 0.86316 0.85355 1.90517 1.51553 1.15562 1.85294 1.17916 0.97732 0.92692 0.88359 0.92708 1.20802 0.93632 0.97494 1.45377 0.91395 1.25018 0.98942 0.94825 0.94599 1.70082 1.31463 1.08639 1.37568 0.86701 0.84521 0.79902 0.78157 1.19401 1.20758 1.20679 1.19841 0.92107 0.95516 0.94117 1.20867 0.98213 0.96997 0.97191 1.20769 0.96608 0.99400 0.99351 1.20785 0.93378 1.00738 1.01325 1.21072 0.97284 0.98662 0.99642 1.21433 0.98762 0.94982 0.92547 1.21934 0.97463 1.00693 0.94002 0.89108 1.21613 1.01118 0.98668 0.93831 1.22153 0.97239 1.01011 0.98554 1.22526 0.94589 0.97923 0.86837 1.87944 1.82148 1.46246 1.13867 1.22666 0.92639 0.96615 0.88850 0.94723 0.94391 0.90044 0.93473 0.92739 0.76855 0.92494 0.88183 0.88071 0.88154 0.88022 0.84587 0.91883 0.91491 0.91341 0.91125 0.93543 0.89485 0.87631 0.93098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.48 16 2 O -0.38 -5.55 9.67 -35.23 -0.34 -5.89 16 3 C 0.05 0.78 5.36 37.16 0.20 0.98 16 4 C 0.17 2.80 1.95 -67.93 -0.13 2.67 16 5 H 0.09 1.82 7.58 -51.93 -0.39 1.42 16 6 N -0.72 -13.98 4.22 -53.80 -0.23 -14.21 16 7 C 0.56 12.83 5.33 -10.98 -0.06 12.77 16 8 O -0.55 -14.31 14.82 5.56 0.08 -14.23 16 9 C 0.05 1.26 2.67 -94.08 -0.25 1.01 16 10 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 11 C -0.54 -12.79 7.62 -34.44 -0.26 -13.05 16 12 H 0.07 1.61 7.82 -52.49 -0.41 1.20 16 13 C 0.07 1.78 3.18 -17.82 -0.06 1.72 16 14 N -0.84 -21.92 10.42 55.43 0.58 -21.34 16 15 Si 0.88 19.48 29.54 -169.99 -5.02 14.46 16 16 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 C -0.01 -0.35 4.50 -104.63 -0.47 -0.82 16 20 C -0.11 -2.51 8.75 -39.58 -0.35 -2.86 16 21 C -0.14 -2.86 10.05 -39.58 -0.40 -3.26 16 22 C -0.14 -2.83 10.05 -39.58 -0.40 -3.23 16 23 C -0.15 -3.14 10.05 -39.58 -0.40 -3.54 16 24 C -0.06 -1.41 8.00 -39.58 -0.32 -1.72 16 25 C -0.12 -1.79 1.88 -90.47 -0.17 -1.96 16 26 H 0.09 1.38 7.40 -51.93 -0.38 1.00 16 27 C -0.11 -1.41 4.98 -26.55 -0.13 -1.54 16 28 C -0.15 -1.67 6.13 -26.59 -0.16 -1.83 16 29 C 0.06 0.72 6.84 37.20 0.25 0.98 16 30 O -0.38 -6.18 10.77 -35.23 -0.38 -6.56 16 31 C 0.07 1.15 5.87 37.21 0.22 1.37 16 32 H 0.03 0.34 8.14 -51.92 -0.42 -0.09 16 33 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.62 6.91 -51.93 -0.36 0.26 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.40 7.38 8.00 -40.82 -0.33 7.06 16 38 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 39 H 0.10 2.08 8.06 -52.48 -0.42 1.66 16 40 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 41 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 42 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 43 H 0.14 3.39 4.97 -52.48 -0.26 3.13 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.07 0.77 6.86 -51.93 -0.36 0.41 16 46 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 48 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.11 1.95 7.25 -51.93 -0.38 1.57 16 51 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 401.88 15.07 6.06 6.06 Total: -1.00 -28.77 401.88 -9.37 -38.13 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: -8.34 Total: 14.43 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: -1.77 Total: -10.85 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.35 Total: -35.55 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.64 Total: -26.68 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.46 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -28.77 -9.37 -38.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361630673.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.784 kcal (2) G-P(sol) polarization free energy of solvation -28.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds