Wall clock time and date at job start Wed Apr 1 2020 05:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42902 * 114.00029 * 2 1 4 4 C 1.52994 * 109.47475 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47737 * 175.33069 * 4 3 2 6 6 N 1.46510 * 109.47093 * 295.33520 * 4 3 2 7 7 C 1.34780 * 119.99411 * 274.99916 * 6 4 3 8 8 O 1.21275 * 120.00510 * 359.97438 * 7 6 4 9 9 C 1.50703 * 119.99330 * 179.97438 * 7 6 4 10 10 H 1.09001 * 109.46982 * 60.00003 * 9 7 6 11 11 C 1.50700 * 109.47326 * 300.00007 * 9 7 6 12 12 H 1.07997 * 119.99940 * 124.74886 * 11 9 7 13 13 C 1.37876 * 120.00008 * 304.74791 * 11 9 7 14 14 N 1.31521 * 120.00006 * 6.23395 * 13 11 9 15 15 Si 1.86797 * 120.00044 * 186.23264 * 13 11 9 16 16 H 1.48491 * 109.47193 * 90.00191 * 15 13 11 17 17 H 1.48498 * 109.46994 * 210.00340 * 15 13 11 18 18 H 1.48494 * 109.47036 * 329.99963 * 15 13 11 19 19 C 1.50699 * 109.46577 * 179.97438 * 9 7 6 20 20 C 1.38233 * 120.00328 * 313.14732 * 19 9 7 21 21 C 1.38241 * 120.00072 * 179.79166 * 20 19 9 22 22 C 1.38241 * 119.99748 * 0.43718 * 21 20 19 23 23 C 1.38233 * 120.00050 * 359.81761 * 22 21 20 24 24 C 1.38239 * 120.00150 * 359.97438 * 23 22 21 25 25 C 1.53001 * 109.47342 * 55.33193 * 4 3 2 26 26 C 1.53176 * 109.54702 * 183.59451 * 25 4 3 27 27 C 1.53100 * 109.15947 * 183.24098 * 26 25 4 28 28 O 1.42905 * 109.48735 * 57.46796 * 27 26 25 29 29 C 1.42899 * 114.10141 * 298.89172 * 28 27 26 30 30 C 1.53097 * 109.41457 * 61.15438 * 29 28 27 31 31 H 1.09003 * 109.47286 * 300.00242 * 1 2 3 32 32 H 1.09002 * 109.47421 * 60.00216 * 1 2 3 33 33 H 1.08996 * 109.47310 * 179.97438 * 1 2 3 34 34 H 1.09006 * 109.47342 * 300.00009 * 3 2 1 35 35 H 1.09004 * 109.47349 * 59.99532 * 3 2 1 36 36 H 0.96991 * 120.00014 * 94.99350 * 6 4 3 37 37 H 0.96995 * 119.99807 * 179.97438 * 14 13 11 38 38 H 1.07995 * 119.99707 * 359.97438 * 20 19 9 39 39 H 1.07998 * 120.00273 * 180.27857 * 21 20 19 40 40 H 1.07996 * 119.99798 * 179.83498 * 22 21 20 41 41 H 1.08003 * 120.00163 * 179.97438 * 23 22 21 42 42 H 1.07999 * 120.00079 * 180.02562 * 24 23 22 43 43 H 1.09007 * 109.54264 * 303.76950 * 25 4 3 44 44 H 1.09006 * 109.51755 * 303.05777 * 26 25 4 45 45 H 1.09002 * 109.52493 * 63.24550 * 26 25 4 46 46 H 1.08998 * 109.40483 * 297.49358 * 27 26 25 47 47 H 1.09003 * 109.48615 * 177.49749 * 27 26 25 48 48 H 1.09000 * 109.48136 * 301.17355 * 29 28 27 49 49 H 1.09002 * 109.48447 * 181.14097 * 29 28 27 50 50 H 1.08997 * 109.52353 * 182.48377 * 30 29 28 51 51 H 1.09004 * 109.51989 * 62.29652 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 1 3.9784 2.1771 -0.0843 6 7 3.9760 0.5568 1.2475 7 6 4.1651 1.3087 2.3500 8 8 3.9709 2.5051 2.3087 9 6 4.6179 0.6626 3.6340 10 1 5.5817 0.1784 3.4769 11 6 3.6034 -0.3655 4.0640 12 1 3.9108 -1.3851 4.2438 13 6 2.2829 -0.0044 4.2280 14 7 1.8849 1.2033 3.8924 15 14 1.0592 -1.2306 4.9268 16 1 1.0195 -1.1022 6.4056 17 1 -0.2896 -0.9560 4.3697 18 1 1.4750 -2.6083 4.5605 19 6 4.7531 1.7143 4.7049 20 6 5.4132 2.8977 4.4320 21 6 5.5335 3.8642 5.4131 22 6 5.0015 3.6433 6.6698 23 6 4.3460 2.4577 6.9442 24 6 4.2219 1.4930 5.9618 25 6 3.9786 0.3268 -1.1874 26 6 5.4969 0.1303 -1.1389 27 6 5.9409 -0.6602 -2.3727 28 8 5.5358 0.0336 -3.5545 29 6 4.1221 0.2031 -3.6761 30 6 3.6054 1.0301 -2.4959 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.6886 1.8465 -0.8900 35 1 1.6885 1.8465 0.8900 36 1 4.1316 -0.4000 1.2804 37 1 0.9558 1.4572 4.0074 38 1 5.8324 3.0685 3.4515 39 1 6.0453 4.7907 5.1986 40 1 5.0978 4.3972 7.4370 41 1 3.9307 2.2849 7.9261 42 1 3.7094 0.5668 6.1761 43 1 3.4837 -0.6434 -1.1409 44 1 5.9900 1.1024 -1.1338 45 1 5.7645 -0.4197 -0.2367 46 1 5.4801 -1.6478 -2.3551 47 1 7.0259 -0.7648 -2.3664 48 1 3.6376 -0.7733 -3.6756 49 1 3.8968 0.7203 -4.6088 50 1 2.5215 1.1232 -2.5632 51 1 4.0591 2.0209 -2.5190 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361911556.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:02 Heat of formation + Delta-G solvation = -111.431361 kcal Electronic energy + Delta-G solvation = -32767.106862 eV Core-core repulsion = 28631.135304 eV Total energy + Delta-G solvation = -4135.971558 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.79285 -38.79125 -37.79025 -36.95443 -35.05118 -33.54584 -32.20624 -31.09877 -30.81503 -29.69809 -28.99020 -27.10252 -26.02046 -24.69433 -23.93588 -23.34214 -21.59205 -21.23841 -20.31121 -19.80634 -19.02968 -16.92355 -16.38904 -16.06703 -15.94220 -15.68718 -15.27723 -15.19958 -14.99028 -14.83059 -14.69766 -14.66707 -14.00640 -13.64295 -13.56406 -13.22082 -13.13275 -12.57831 -12.36899 -12.33615 -12.25452 -12.04623 -11.95011 -11.60535 -11.40338 -11.28385 -11.24448 -11.14718 -10.94547 -10.75715 -10.56998 -10.43667 -10.38047 -10.16345 -10.04007 -9.66960 -9.46932 -9.34423 -9.16475 -8.69141 -8.21382 -7.88330 -7.69879 -7.40585 -6.12266 -4.24391 2.53384 2.58784 3.21243 3.29738 3.31464 3.87147 4.13602 4.17419 4.32002 4.52177 4.76189 4.91466 4.92785 5.01400 5.06373 5.18241 5.26161 5.39232 5.51030 5.54310 5.63497 5.65445 5.73086 5.75366 5.82383 5.84381 5.89475 5.96104 5.96480 5.97687 6.04393 6.08797 6.13022 6.24474 6.39112 6.45859 6.53806 6.65446 6.69048 6.82088 6.93855 7.12810 7.18457 7.20310 7.53040 7.55902 7.62442 7.69813 7.72282 7.81087 8.15392 8.28061 8.68212 8.89414 9.41576 9.79566 10.89385 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.011188 B = 0.004140 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.158448 B = 6762.369599 C = 8200.167856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.378 6.378 3 C 0.052 3.948 4 C 0.168 3.832 5 H 0.088 0.912 6 N -0.721 5.721 7 C 0.558 3.442 8 O -0.553 6.553 9 C 0.056 3.944 10 H 0.055 0.945 11 C -0.538 4.538 12 H 0.065 0.935 13 C 0.083 3.917 14 N -0.840 5.840 15 Si 0.883 3.117 16 H -0.280 1.280 17 H -0.288 1.288 18 H -0.273 1.273 19 C -0.014 4.014 20 C -0.099 4.099 21 C -0.143 4.143 22 C -0.146 4.146 23 C -0.147 4.147 24 C -0.074 4.074 25 C -0.092 4.092 26 C -0.148 4.148 27 C 0.061 3.939 28 O -0.387 6.387 29 C 0.064 3.936 30 C -0.147 4.147 31 H 0.039 0.961 32 H 0.030 0.970 33 H 0.077 0.923 34 H 0.037 0.963 35 H 0.068 0.932 36 H 0.396 0.604 37 H 0.262 0.738 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.128 0.872 43 H 0.085 0.915 44 H 0.070 0.930 45 H 0.079 0.921 46 H 0.049 0.951 47 H 0.091 0.909 48 H 0.049 0.951 49 H 0.089 0.911 50 H 0.074 0.926 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.724 -2.238 -9.749 10.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.296 6.296 3 C -0.026 4.026 4 C 0.061 3.939 5 H 0.105 0.895 6 N -0.373 5.373 7 C 0.347 3.653 8 O -0.431 6.431 9 C 0.035 3.965 10 H 0.073 0.927 11 C -0.576 4.576 12 H 0.083 0.917 13 C -0.125 4.125 14 N -0.472 5.472 15 Si 0.711 3.289 16 H -0.206 1.206 17 H -0.214 1.214 18 H -0.198 1.198 19 C -0.015 4.015 20 C -0.117 4.117 21 C -0.162 4.162 22 C -0.164 4.164 23 C -0.165 4.165 24 C -0.092 4.092 25 C -0.111 4.111 26 C -0.186 4.186 27 C -0.015 4.015 28 O -0.306 6.306 29 C -0.013 4.013 30 C -0.186 4.186 31 H 0.058 0.942 32 H 0.048 0.952 33 H 0.095 0.905 34 H 0.055 0.945 35 H 0.086 0.914 36 H 0.230 0.770 37 H 0.072 0.928 38 H 0.126 0.874 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.145 0.855 43 H 0.103 0.897 44 H 0.088 0.912 45 H 0.098 0.902 46 H 0.067 0.933 47 H 0.109 0.891 48 H 0.067 0.933 49 H 0.107 0.893 50 H 0.092 0.908 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.656 -1.314 -9.911 10.345 hybrid contribution -1.666 -0.741 0.715 1.958 sum 0.990 -2.055 -9.196 9.475 Atomic orbital electron populations 1.22597 0.82255 1.01801 0.99335 1.87831 1.18556 1.27975 1.95273 1.23028 0.94649 0.84741 1.00145 1.20684 0.91348 0.97281 0.84542 0.89457 1.45693 1.71114 1.11334 1.09127 1.20872 0.74335 0.86158 0.83924 1.90514 1.52214 1.16100 1.84225 1.17871 0.96832 0.93212 0.88590 0.92748 1.20645 0.91925 0.95046 1.49973 0.91712 1.24954 0.98181 0.94931 0.94480 1.70025 1.16564 1.17673 1.42975 0.86722 0.80857 0.81910 0.79401 1.20555 1.21433 1.19759 1.19881 0.92860 0.94202 0.94575 1.20989 0.99247 0.93912 0.97529 1.20843 1.02465 0.98813 0.94030 1.20777 1.01516 0.97432 0.96652 1.20999 1.01537 0.95074 0.98915 1.21191 0.96557 0.99012 0.92452 1.21365 0.95505 1.00453 0.93788 1.22212 0.96013 1.01783 0.98594 1.22596 0.99993 0.94332 0.84594 1.87896 1.22533 1.78048 1.42146 1.22536 0.81571 0.98984 0.98213 1.22212 1.01620 1.00001 0.94732 0.94194 0.95172 0.90465 0.94479 0.91421 0.77036 0.92808 0.87390 0.88094 0.88210 0.88048 0.85455 0.89714 0.91169 0.90237 0.93298 0.89127 0.93292 0.89262 0.90767 0.91104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 11.01 101.05 1.11 1.67 16 2 O -0.38 -6.64 9.71 -35.23 -0.34 -6.98 16 3 C 0.05 0.92 5.35 37.15 0.20 1.12 16 4 C 0.17 2.80 1.95 -67.93 -0.13 2.67 16 5 H 0.09 1.58 7.58 -51.93 -0.39 1.18 16 6 N -0.72 -13.71 4.23 -53.80 -0.23 -13.94 16 7 C 0.56 12.61 5.22 -10.98 -0.06 12.56 16 8 O -0.55 -14.10 13.52 5.56 0.08 -14.03 16 9 C 0.06 1.29 2.78 -94.07 -0.26 1.03 16 10 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 11 C -0.54 -12.92 7.10 -34.44 -0.24 -13.16 16 12 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 13 C 0.08 2.05 3.93 -17.82 -0.07 1.98 16 14 N -0.84 -22.22 11.12 55.43 0.62 -21.60 16 15 Si 0.88 19.88 29.54 -169.99 -5.02 14.86 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 19 C -0.01 -0.33 4.64 -104.62 -0.49 -0.82 16 20 C -0.10 -2.20 8.21 -39.58 -0.32 -2.53 16 21 C -0.14 -2.91 10.05 -39.58 -0.40 -3.31 16 22 C -0.15 -2.86 10.05 -39.58 -0.40 -3.26 16 23 C -0.15 -3.05 10.05 -39.58 -0.40 -3.45 16 24 C -0.07 -1.71 8.49 -39.58 -0.34 -2.05 16 25 C -0.09 -1.22 1.76 -90.44 -0.16 -1.38 16 26 C -0.15 -1.83 5.17 -26.59 -0.14 -1.97 16 27 C 0.06 0.68 6.84 37.21 0.25 0.93 16 28 O -0.39 -4.83 10.77 -35.23 -0.38 -5.21 16 29 C 0.06 0.68 6.84 37.21 0.25 0.94 16 30 C -0.15 -1.72 5.07 -26.59 -0.13 -1.85 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.04 0.56 6.85 -51.93 -0.36 0.21 16 35 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 36 H 0.40 7.22 8.07 -40.82 -0.33 6.89 16 37 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 38 H 0.11 2.39 6.98 -52.49 -0.37 2.02 16 39 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 40 H 0.10 1.66 8.06 -52.49 -0.42 1.23 16 41 H 0.10 1.85 8.06 -52.48 -0.42 1.43 16 42 H 0.13 3.04 6.06 -52.49 -0.32 2.72 16 43 H 0.08 1.19 7.45 -51.92 -0.39 0.80 16 44 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.08 0.98 7.34 -51.93 -0.38 0.60 16 46 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 49 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.07 0.84 6.82 -51.93 -0.35 0.48 16 51 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 401.73 15.07 6.05 6.05 Total: -1.00 -29.08 401.73 -9.29 -38.37 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: -8.35 Total: 13.36 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -1.72 Total: -10.88 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.39 Total: -35.54 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.65 Total: -26.22 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -29.08 -9.29 -38.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361911556.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.059 kcal (2) G-P(sol) polarization free energy of solvation -29.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds