Wall clock time and date at job start Wed Apr 1 2020 05:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42902 * 114.00029 * 2 1 4 4 C 1.52994 * 109.47475 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47737 * 175.33069 * 4 3 2 6 6 N 1.46510 * 109.47093 * 295.33520 * 4 3 2 7 7 C 1.34780 * 119.99411 * 274.99916 * 6 4 3 8 8 O 1.21275 * 120.00510 * 359.97438 * 7 6 4 9 9 C 1.50703 * 119.99330 * 179.97438 * 7 6 4 10 10 H 1.09001 * 109.46982 * 60.00003 * 9 7 6 11 11 C 1.50700 * 109.47326 * 300.00007 * 9 7 6 12 12 H 1.07997 * 119.99940 * 124.74886 * 11 9 7 13 13 C 1.37876 * 120.00008 * 304.74791 * 11 9 7 14 14 N 1.31521 * 120.00006 * 6.23395 * 13 11 9 15 15 Si 1.86797 * 120.00044 * 186.23264 * 13 11 9 16 16 H 1.48491 * 109.47193 * 90.00191 * 15 13 11 17 17 H 1.48498 * 109.46994 * 210.00340 * 15 13 11 18 18 H 1.48494 * 109.47036 * 329.99963 * 15 13 11 19 19 C 1.50699 * 109.46577 * 179.97438 * 9 7 6 20 20 C 1.38233 * 120.00328 * 313.14732 * 19 9 7 21 21 C 1.38241 * 120.00072 * 179.79166 * 20 19 9 22 22 C 1.38241 * 119.99748 * 0.43718 * 21 20 19 23 23 C 1.38233 * 120.00050 * 359.81761 * 22 21 20 24 24 C 1.38239 * 120.00150 * 359.97438 * 23 22 21 25 25 C 1.53001 * 109.47342 * 55.33193 * 4 3 2 26 26 C 1.53176 * 109.54702 * 183.59451 * 25 4 3 27 27 C 1.53100 * 109.15947 * 183.24098 * 26 25 4 28 28 O 1.42905 * 109.48735 * 57.46796 * 27 26 25 29 29 C 1.42899 * 114.10141 * 298.89172 * 28 27 26 30 30 C 1.53097 * 109.41457 * 61.15438 * 29 28 27 31 31 H 1.09003 * 109.47286 * 300.00242 * 1 2 3 32 32 H 1.09002 * 109.47421 * 60.00216 * 1 2 3 33 33 H 1.08996 * 109.47310 * 179.97438 * 1 2 3 34 34 H 1.09006 * 109.47342 * 300.00009 * 3 2 1 35 35 H 1.09004 * 109.47349 * 59.99532 * 3 2 1 36 36 H 0.96991 * 120.00014 * 94.99350 * 6 4 3 37 37 H 0.96995 * 119.99807 * 179.97438 * 14 13 11 38 38 H 1.07995 * 119.99707 * 359.97438 * 20 19 9 39 39 H 1.07998 * 120.00273 * 180.27857 * 21 20 19 40 40 H 1.07996 * 119.99798 * 179.83498 * 22 21 20 41 41 H 1.08003 * 120.00163 * 179.97438 * 23 22 21 42 42 H 1.07999 * 120.00079 * 180.02562 * 24 23 22 43 43 H 1.09007 * 109.54264 * 303.76950 * 25 4 3 44 44 H 1.09006 * 109.51755 * 303.05777 * 26 25 4 45 45 H 1.09002 * 109.52493 * 63.24550 * 26 25 4 46 46 H 1.08998 * 109.40483 * 297.49358 * 27 26 25 47 47 H 1.09003 * 109.48615 * 177.49749 * 27 26 25 48 48 H 1.09000 * 109.48136 * 301.17355 * 29 28 27 49 49 H 1.09002 * 109.48447 * 181.14097 * 29 28 27 50 50 H 1.08997 * 109.52353 * 182.48377 * 30 29 28 51 51 H 1.09004 * 109.51989 * 62.29652 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 1 3.9784 2.1771 -0.0843 6 7 3.9760 0.5568 1.2475 7 6 4.1651 1.3087 2.3500 8 8 3.9709 2.5051 2.3087 9 6 4.6179 0.6626 3.6340 10 1 5.5817 0.1784 3.4769 11 6 3.6034 -0.3655 4.0640 12 1 3.9108 -1.3851 4.2438 13 6 2.2829 -0.0044 4.2280 14 7 1.8849 1.2033 3.8924 15 14 1.0592 -1.2306 4.9268 16 1 1.0195 -1.1022 6.4056 17 1 -0.2896 -0.9560 4.3697 18 1 1.4750 -2.6083 4.5605 19 6 4.7531 1.7143 4.7049 20 6 5.4132 2.8977 4.4320 21 6 5.5335 3.8642 5.4131 22 6 5.0015 3.6433 6.6698 23 6 4.3460 2.4577 6.9442 24 6 4.2219 1.4930 5.9618 25 6 3.9786 0.3268 -1.1874 26 6 5.4969 0.1303 -1.1389 27 6 5.9409 -0.6602 -2.3727 28 8 5.5358 0.0336 -3.5545 29 6 4.1221 0.2031 -3.6761 30 6 3.6054 1.0301 -2.4959 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.6886 1.8465 -0.8900 35 1 1.6885 1.8465 0.8900 36 1 4.1316 -0.4000 1.2804 37 1 0.9558 1.4572 4.0074 38 1 5.8324 3.0685 3.4515 39 1 6.0453 4.7907 5.1986 40 1 5.0978 4.3972 7.4370 41 1 3.9307 2.2849 7.9261 42 1 3.7094 0.5668 6.1761 43 1 3.4837 -0.6434 -1.1409 44 1 5.9900 1.1024 -1.1338 45 1 5.7645 -0.4197 -0.2367 46 1 5.4801 -1.6478 -2.3551 47 1 7.0259 -0.7648 -2.3664 48 1 3.6376 -0.7733 -3.6756 49 1 3.8968 0.7203 -4.6088 50 1 2.5215 1.1232 -2.5632 51 1 4.0591 2.0209 -2.5190 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361911556.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:01 Heat of formation + Delta-G solvation = -128.219282 kcal Electronic energy + Delta-G solvation = -32767.834841 eV Core-core repulsion = 28631.135304 eV Total energy + Delta-G solvation = -4136.699536 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.09923 -40.25503 -39.19633 -38.48354 -36.36235 -35.40650 -33.58144 -32.62115 -32.02676 -31.36814 -30.38118 -28.78998 -27.28258 -25.92141 -25.66460 -24.33115 -23.05261 -22.83383 -21.77914 -21.07749 -20.64668 -18.64545 -17.76794 -17.46781 -17.14513 -16.93957 -16.86597 -16.56341 -16.46776 -16.35357 -16.17026 -15.61593 -15.57810 -15.34679 -14.89315 -14.56839 -14.43344 -14.10612 -13.98790 -13.94004 -13.63907 -13.45170 -13.19242 -13.06571 -13.01428 -12.75069 -12.65909 -12.53951 -12.37317 -12.23713 -12.18287 -11.76610 -11.71231 -11.48530 -11.39787 -11.16323 -11.11441 -10.64973 -10.53217 -10.43147 -10.02765 -9.51147 -9.38253 -9.09787 -8.05334 -6.20096 0.87167 0.91406 1.39276 1.44215 1.49613 2.37581 2.51358 2.73808 3.01956 3.05337 3.24007 3.35710 3.63351 3.86021 3.93780 4.12131 4.28417 4.31361 4.33644 4.35682 4.38681 4.43979 4.47529 4.48239 4.50770 4.59037 4.67355 4.70488 4.74655 4.78900 4.84622 4.85035 4.93381 4.98586 5.00142 5.01391 5.12573 5.17435 5.20903 5.27432 5.45798 5.48221 5.54201 5.73482 5.88495 5.94078 5.99220 6.07128 6.27040 6.32198 6.43273 6.52681 6.79779 7.20152 7.47428 8.05731 8.94305 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.011188 B = 0.004140 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.158448 B = 6762.369599 C = 8200.167856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.063 3.937 4 C 0.169 3.831 5 H 0.071 0.929 6 N -0.712 5.712 7 C 0.558 3.442 8 O -0.587 6.587 9 C 0.047 3.953 10 H 0.064 0.936 11 C -0.533 4.533 12 H 0.066 0.934 13 C 0.053 3.947 14 N -0.864 5.864 15 Si 0.929 3.071 16 H -0.280 1.280 17 H -0.296 1.296 18 H -0.265 1.265 19 C -0.035 4.035 20 C -0.115 4.115 21 C -0.145 4.145 22 C -0.142 4.142 23 C -0.151 4.151 24 C -0.097 4.097 25 C -0.080 4.080 26 C -0.145 4.145 27 C 0.064 3.936 28 O -0.402 6.402 29 C 0.064 3.936 30 C -0.144 4.144 31 H 0.015 0.985 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.064 0.936 35 H 0.018 0.982 36 H 0.400 0.600 37 H 0.252 0.748 38 H 0.100 0.900 39 H 0.129 0.871 40 H 0.138 0.862 41 H 0.126 0.874 42 H 0.112 0.888 43 H 0.083 0.917 44 H 0.058 0.942 45 H 0.076 0.924 46 H 0.060 0.940 47 H 0.104 0.896 48 H 0.058 0.942 49 H 0.108 0.892 50 H 0.081 0.919 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.929 -2.739 -10.476 11.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C -0.015 4.015 4 C 0.063 3.937 5 H 0.089 0.911 6 N -0.362 5.362 7 C 0.348 3.652 8 O -0.467 6.467 9 C 0.026 3.974 10 H 0.082 0.918 11 C -0.571 4.571 12 H 0.084 0.916 13 C -0.152 4.152 14 N -0.498 5.498 15 Si 0.757 3.243 16 H -0.206 1.206 17 H -0.223 1.223 18 H -0.189 1.189 19 C -0.036 4.036 20 C -0.134 4.134 21 C -0.163 4.163 22 C -0.160 4.160 23 C -0.169 4.169 24 C -0.115 4.115 25 C -0.099 4.099 26 C -0.183 4.183 27 C -0.013 4.013 28 O -0.321 6.321 29 C -0.013 4.013 30 C -0.182 4.182 31 H 0.034 0.966 32 H 0.077 0.923 33 H 0.114 0.886 34 H 0.082 0.918 35 H 0.036 0.964 36 H 0.235 0.765 37 H 0.061 0.939 38 H 0.119 0.881 39 H 0.147 0.853 40 H 0.156 0.844 41 H 0.144 0.856 42 H 0.130 0.870 43 H 0.101 0.899 44 H 0.077 0.923 45 H 0.095 0.905 46 H 0.078 0.922 47 H 0.122 0.878 48 H 0.077 0.923 49 H 0.126 0.874 50 H 0.099 0.901 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.870 -1.859 -10.655 11.190 hybrid contribution -1.710 -0.568 0.963 2.043 sum 1.160 -2.427 -9.691 10.058 Atomic orbital electron populations 1.22754 0.80926 1.03119 0.99516 1.87800 1.20060 1.27690 1.95287 1.22833 0.95003 0.84710 0.98969 1.20788 0.90942 0.97164 0.84818 0.91095 1.45583 1.70055 1.11286 1.09255 1.20789 0.74051 0.85806 0.84559 1.90482 1.53833 1.17481 1.84876 1.17981 0.97052 0.93344 0.89062 0.91793 1.20792 0.92094 0.95202 1.48984 0.91592 1.25388 0.99365 0.95752 0.94716 1.70179 1.15902 1.19176 1.44562 0.85995 0.78898 0.80776 0.78674 1.20564 1.22278 1.18894 1.19979 0.93837 0.94902 0.94834 1.21046 0.99959 0.94417 0.97954 1.21213 1.01980 0.99238 0.93860 1.21179 0.99975 0.97636 0.97191 1.21318 1.01208 0.94932 0.99450 1.21179 0.97687 0.99415 0.93247 1.21256 0.96089 0.99590 0.92970 1.22175 0.95152 1.01475 0.99503 1.22646 1.00992 0.94262 0.83351 1.87885 1.23540 1.78263 1.42452 1.22653 0.80788 0.99480 0.98341 1.22194 1.02072 0.99784 0.94137 0.96635 0.92327 0.88607 0.91782 0.96398 0.76545 0.93916 0.88143 0.85261 0.84433 0.85629 0.87031 0.89880 0.92328 0.90542 0.92198 0.87751 0.92324 0.87367 0.90083 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 11.01 113.37 1.25 2.23 16 2 O -0.39 -13.52 9.71 -148.98 -1.45 -14.97 16 3 C 0.06 2.24 5.35 71.98 0.39 2.62 16 4 C 0.17 5.72 1.95 44.99 0.09 5.81 16 5 H 0.07 2.66 7.58 -2.39 -0.02 2.64 16 6 N -0.71 -27.76 4.23 -442.53 -1.87 -29.63 16 7 C 0.56 26.12 5.22 87.66 0.46 26.58 16 8 O -0.59 -31.14 13.52 -3.02 -0.04 -31.18 16 9 C 0.05 2.21 2.78 -13.03 -0.04 2.17 16 10 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 11 C -0.53 -25.99 7.10 25.60 0.18 -25.81 16 12 H 0.07 3.14 7.82 -2.91 -0.02 3.11 16 13 C 0.05 2.66 3.93 84.65 0.33 3.00 16 14 N -0.86 -47.17 11.12 21.45 0.24 -46.94 16 15 Si 0.93 41.19 29.54 68.60 2.03 43.21 16 16 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 17 H -0.30 -13.44 7.11 99.48 0.71 -12.73 16 18 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 19 C -0.03 -1.65 4.64 -19.87 -0.09 -1.74 16 20 C -0.12 -5.22 8.21 22.27 0.18 -5.03 16 21 C -0.14 -5.70 10.05 22.27 0.22 -5.47 16 22 C -0.14 -5.25 10.05 22.27 0.22 -5.03 16 23 C -0.15 -6.10 10.05 22.27 0.22 -5.87 16 24 C -0.10 -4.53 8.49 22.27 0.19 -4.34 16 25 C -0.08 -2.06 1.76 -10.68 -0.02 -2.08 16 26 C -0.15 -3.48 5.17 30.69 0.16 -3.32 16 27 C 0.06 1.29 6.84 72.02 0.49 1.79 16 28 O -0.40 -9.17 10.77 -148.98 -1.60 -10.77 16 29 C 0.06 1.20 6.84 72.01 0.49 1.70 16 30 C -0.14 -3.11 5.07 30.68 0.16 -2.95 16 31 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.06 1.91 6.85 -2.38 -0.02 1.89 16 35 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.40 14.78 8.07 -92.71 -0.75 14.04 16 37 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 38 H 0.10 4.58 6.98 -2.91 -0.02 4.56 16 39 H 0.13 4.25 8.06 -2.91 -0.02 4.23 16 40 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 41 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 42 H 0.11 5.44 6.06 -2.91 -0.02 5.42 16 43 H 0.08 2.21 7.45 -2.38 -0.02 2.19 16 44 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 45 H 0.08 1.86 7.34 -2.39 -0.02 1.84 16 46 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 48 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 50 H 0.08 1.64 6.82 -2.39 -0.02 1.63 16 51 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 Total: -1.00 -64.07 401.73 2.36 -61.71 By element: Atomic # 1 Polarization: 44.16 SS G_CDS: 0.17 Total: 44.33 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: 4.89 Total: -15.77 kcal Atomic # 7 Polarization: -74.93 SS G_CDS: -1.63 Total: -76.57 kcal Atomic # 8 Polarization: -53.83 SS G_CDS: -3.09 Total: -56.92 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.21 kcal Total: -64.07 2.36 -61.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361911556.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.507 kcal (2) G-P(sol) polarization free energy of solvation -64.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds