Wall clock time and date at job start Wed Apr 1 2020 05:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00122 * 2 1 4 4 C 1.52995 * 109.47188 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.47201 * 185.00055 * 4 3 2 6 6 N 1.46502 * 109.47378 * 64.99559 * 4 3 2 7 7 C 1.34778 * 119.99583 * 85.00257 * 6 4 3 8 8 O 1.21283 * 120.00283 * 359.97438 * 7 6 4 9 9 C 1.50703 * 119.99676 * 180.02562 * 7 6 4 10 10 H 1.09004 * 109.47187 * 42.21309 * 9 7 6 11 11 C 1.50704 * 109.46583 * 282.21458 * 9 7 6 12 12 H 1.07990 * 120.00272 * 305.01238 * 11 9 7 13 13 C 1.37877 * 119.99602 * 125.02245 * 11 9 7 14 14 N 1.31515 * 119.99848 * 188.21649 * 13 11 9 15 15 Si 1.86799 * 120.00427 * 8.21419 * 13 11 9 16 16 H 1.48503 * 109.47112 * 275.63795 * 15 13 11 17 17 H 1.48503 * 109.46805 * 35.63344 * 15 13 11 18 18 H 1.48500 * 109.47259 * 155.63416 * 15 13 11 19 19 C 1.50698 * 109.47173 * 162.21487 * 9 7 6 20 20 C 1.38242 * 119.99777 * 63.99921 * 19 9 7 21 21 C 1.38236 * 119.99446 * 179.78684 * 20 19 9 22 22 C 1.38237 * 120.00204 * 0.44623 * 21 20 19 23 23 C 1.38235 * 119.99864 * 359.81061 * 22 21 20 24 24 C 1.38233 * 120.00217 * 359.97438 * 23 22 21 25 25 C 1.53002 * 109.46906 * 304.99389 * 4 3 2 26 26 C 1.53171 * 109.54730 * 299.82645 * 25 4 3 27 27 C 1.53104 * 109.15990 * 183.24083 * 26 25 4 28 28 O 1.42900 * 109.48786 * 57.47203 * 27 26 25 29 29 C 1.42905 * 114.09717 * 298.89076 * 28 27 26 30 30 C 1.53094 * 109.41488 * 61.15929 * 29 28 27 31 31 H 1.09000 * 109.46933 * 300.00477 * 1 2 3 32 32 H 1.09002 * 109.47053 * 59.99746 * 1 2 3 33 33 H 1.08992 * 109.47305 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47317 * 59.99468 * 3 2 1 35 35 H 1.09002 * 109.46577 * 300.00014 * 3 2 1 36 36 H 0.96990 * 120.00063 * 264.99899 * 6 4 3 37 37 H 0.97003 * 120.00075 * 179.97438 * 14 13 11 38 38 H 1.08000 * 119.99884 * 359.97438 * 20 19 9 39 39 H 1.08004 * 119.99667 * 180.27444 * 21 20 19 40 40 H 1.08002 * 119.99637 * 179.83306 * 22 21 20 41 41 H 1.07999 * 119.99727 * 180.02562 * 23 22 21 42 42 H 1.07995 * 120.00088 * 179.97438 * 24 23 22 43 43 H 1.09006 * 109.54024 * 60.00270 * 25 4 3 44 44 H 1.09005 * 109.52500 * 303.05744 * 26 25 4 45 45 H 1.08996 * 109.52554 * 63.24437 * 26 25 4 46 46 H 1.09002 * 109.40419 * 297.49480 * 27 26 25 47 47 H 1.09002 * 109.48611 * 177.50447 * 27 26 25 48 48 H 1.08992 * 109.48220 * 301.17252 * 29 28 27 49 49 H 1.09004 * 109.48124 * 181.13992 * 29 28 27 50 50 H 1.08998 * 109.51885 * 182.48625 * 30 29 28 51 51 H 1.08998 * 109.57673 * 62.32440 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.9786 2.1765 0.0889 6 7 3.9757 0.5643 -1.2527 7 6 4.1645 1.3229 -2.3506 8 8 3.9695 2.5190 -2.3022 9 6 4.6168 0.6847 -3.6387 10 1 4.0761 -0.2494 -3.7909 11 6 6.0956 0.4032 -3.5675 12 1 6.7868 1.2008 -3.3387 13 6 6.5662 -0.8727 -3.7948 14 7 7.8317 -1.1555 -3.5758 15 14 5.4062 -2.1996 -4.4138 16 1 4.6904 -2.8073 -3.2634 17 1 4.4209 -1.5990 -5.3486 18 1 6.1852 -3.2472 -5.1216 19 6 4.3381 1.6195 -4.7874 20 6 4.9824 2.8406 -4.8568 21 6 4.7299 3.6961 -5.9129 22 6 3.8264 3.3345 -6.8946 23 6 3.1782 2.1157 -6.8223 24 6 3.4339 1.2582 -5.7687 25 6 3.9790 0.3194 1.1808 26 6 3.5233 0.9688 2.4911 27 6 4.0409 0.1395 3.6694 28 8 5.4647 0.0429 3.5955 29 6 5.9452 -0.5998 2.4130 30 6 5.5062 0.2010 1.1843 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.6886 1.8464 0.8899 35 1 1.6886 1.8463 -0.8900 36 1 4.1314 -0.3923 -1.2915 37 1 8.1627 -2.0533 -3.7353 38 1 5.6851 3.1248 -4.0876 39 1 5.2366 4.6483 -5.9694 40 1 3.6272 4.0042 -7.7182 41 1 2.4726 1.8330 -7.5896 42 1 2.9272 0.3062 -5.7120 43 1 3.5365 -0.6728 1.0924 44 1 3.9244 1.9803 2.5552 45 1 2.4343 1.0054 2.5201 46 1 3.6061 -0.8592 3.6280 47 1 3.7573 0.6210 4.6053 48 1 5.5355 -1.6081 2.3552 49 1 7.0336 -0.6508 2.4437 50 1 5.8339 -0.3111 0.2797 51 1 5.9486 1.1965 1.2200 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361911559.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:09 Heat of formation + Delta-G solvation = -136.694926 kcal Electronic energy + Delta-G solvation = -32203.996603 eV Core-core repulsion = 28066.929535 eV Total energy + Delta-G solvation = -4137.067068 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.35137 -40.40735 -39.43341 -38.68039 -36.53484 -35.49610 -33.89020 -33.32422 -32.08373 -31.62726 -30.53606 -29.24577 -27.32622 -25.98845 -25.49651 -24.37582 -23.39637 -23.15533 -21.94521 -21.28320 -20.66429 -19.12214 -18.12810 -17.85463 -17.41429 -17.17517 -16.93978 -16.63559 -16.52136 -16.33914 -16.28944 -15.77615 -15.63277 -15.44248 -15.09163 -14.80811 -14.60925 -14.51669 -14.24535 -14.04059 -13.71278 -13.59547 -13.52903 -13.27549 -13.14995 -12.90557 -12.76295 -12.73511 -12.38035 -12.25454 -12.08264 -11.90433 -11.79029 -11.71413 -11.53795 -11.43422 -11.21329 -10.89492 -10.66002 -10.55012 -10.43268 -9.90503 -9.64114 -9.37258 -8.36007 -6.42663 0.63467 0.70392 1.31653 1.38029 1.46066 1.89825 2.28679 2.39172 2.86237 2.98044 2.99928 3.15649 3.51563 3.73975 3.87065 4.06262 4.06818 4.15819 4.21823 4.24660 4.29202 4.32379 4.36508 4.40375 4.41180 4.48221 4.52707 4.53900 4.59145 4.61418 4.70107 4.79836 4.81494 4.83123 4.85068 4.88718 4.91430 4.95739 5.15488 5.19854 5.20948 5.32680 5.37783 5.40501 5.65726 5.69664 5.74797 5.95246 6.18771 6.20625 6.27883 6.30769 6.58818 6.70818 7.20389 7.46994 8.79042 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.009943 B = 0.004021 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.344059 B = 6961.867330 C = 8047.249811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.060 3.940 4 C 0.155 3.845 5 H 0.077 0.923 6 N -0.711 5.711 7 C 0.531 3.469 8 O -0.587 6.587 9 C 0.035 3.965 10 H 0.068 0.932 11 C -0.501 4.501 12 H 0.031 0.969 13 C 0.036 3.964 14 N -0.927 5.927 15 Si 0.922 3.078 16 H -0.246 1.246 17 H -0.248 1.248 18 H -0.286 1.286 19 C -0.060 4.060 20 C -0.099 4.099 21 C -0.136 4.136 22 C -0.134 4.134 23 C -0.125 4.125 24 C -0.148 4.148 25 C -0.080 4.080 26 C -0.141 4.141 27 C 0.059 3.941 28 O -0.402 6.402 29 C 0.067 3.933 30 C -0.150 4.150 31 H 0.057 0.943 32 H 0.034 0.966 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.032 0.968 36 H 0.403 0.597 37 H 0.271 0.729 38 H 0.087 0.913 39 H 0.133 0.867 40 H 0.151 0.849 41 H 0.149 0.851 42 H 0.121 0.879 43 H 0.089 0.911 44 H 0.066 0.934 45 H 0.094 0.906 46 H 0.061 0.939 47 H 0.112 0.888 48 H 0.062 0.938 49 H 0.094 0.906 50 H 0.061 0.939 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.066 0.244 8.235 17.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C -0.018 4.018 4 C 0.051 3.949 5 H 0.095 0.905 6 N -0.360 5.360 7 C 0.320 3.680 8 O -0.468 6.468 9 C 0.013 3.987 10 H 0.086 0.914 11 C -0.539 4.539 12 H 0.050 0.950 13 C -0.165 4.165 14 N -0.564 5.564 15 Si 0.745 3.255 16 H -0.170 1.170 17 H -0.171 1.171 18 H -0.212 1.212 19 C -0.061 4.061 20 C -0.117 4.117 21 C -0.153 4.153 22 C -0.152 4.152 23 C -0.142 4.142 24 C -0.166 4.166 25 C -0.099 4.099 26 C -0.179 4.179 27 C -0.017 4.017 28 O -0.321 6.321 29 C -0.010 4.010 30 C -0.188 4.188 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.117 0.883 34 H 0.100 0.900 35 H 0.050 0.950 36 H 0.238 0.762 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.151 0.849 40 H 0.168 0.832 41 H 0.167 0.833 42 H 0.139 0.861 43 H 0.107 0.893 44 H 0.085 0.915 45 H 0.113 0.887 46 H 0.079 0.921 47 H 0.130 0.870 48 H 0.080 0.920 49 H 0.112 0.888 50 H 0.080 0.920 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.825 0.849 8.434 17.077 hybrid contribution 0.258 -0.773 -0.658 1.047 sum -14.567 0.076 7.776 16.512 Atomic orbital electron populations 1.22905 0.79890 1.03729 1.00495 1.87852 1.21003 1.27345 1.95472 1.22876 0.93095 0.85207 1.00635 1.21058 0.92435 0.97600 0.83846 0.90493 1.45823 1.68785 1.11631 1.09791 1.21243 0.73532 0.86701 0.86514 1.90537 1.53762 1.16410 1.86062 1.18261 0.96951 0.94958 0.88506 0.91416 1.20413 0.88816 0.95148 1.49514 0.95020 1.25785 0.96611 1.00113 0.93956 1.70011 1.16457 1.21999 1.47958 0.86090 0.79836 0.78819 0.80761 1.17013 1.17146 1.21193 1.20030 0.94806 0.94714 0.96585 1.20822 0.98801 0.94452 0.97637 1.21354 0.99478 0.99855 0.94662 1.21352 0.97140 0.97378 0.99334 1.21352 1.00532 0.94305 0.98049 1.21243 0.98922 1.00560 0.95865 1.21280 0.94783 1.00195 0.93640 1.22202 1.02394 0.99915 0.93356 1.22736 0.80191 0.99867 0.98889 1.87894 1.22733 1.80406 1.41082 1.22545 0.99908 0.95001 0.83515 1.22179 0.96279 1.01152 0.99191 0.92411 0.94717 0.88326 0.90040 0.95009 0.76231 0.91958 0.89511 0.84931 0.83167 0.83313 0.86099 0.89272 0.91527 0.88735 0.92116 0.86974 0.91961 0.88819 0.91990 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.71 16 2 O -0.40 -9.94 9.77 -148.98 -1.46 -11.40 16 3 C 0.06 1.58 5.24 71.98 0.38 1.95 16 4 C 0.16 4.77 1.95 44.99 0.09 4.86 16 5 H 0.08 2.68 7.58 -2.38 -0.02 2.66 16 6 N -0.71 -26.52 4.39 -442.52 -1.94 -28.46 16 7 C 0.53 23.81 6.92 87.66 0.61 24.42 16 8 O -0.59 -28.66 14.63 -3.04 -0.04 -28.70 16 9 C 0.03 1.63 2.20 -13.03 -0.03 1.60 16 10 H 0.07 2.98 4.71 -2.39 -0.01 2.97 16 11 C -0.50 -27.42 8.32 25.60 0.21 -27.20 16 12 H 0.03 2.00 7.87 -2.92 -0.02 1.98 16 13 C 0.04 1.94 5.47 84.65 0.46 2.40 16 14 N -0.93 -54.12 13.96 21.45 0.30 -53.82 16 15 Si 0.92 39.99 26.85 68.60 1.84 41.84 16 16 H -0.25 -9.66 7.11 99.48 0.71 -8.96 16 17 H -0.25 -10.17 6.95 99.48 0.69 -9.48 16 18 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 19 C -0.06 -2.74 4.52 -19.87 -0.09 -2.83 16 20 C -0.10 -4.47 7.98 22.27 0.18 -4.29 16 21 C -0.14 -4.97 10.05 22.27 0.22 -4.75 16 22 C -0.13 -4.18 10.05 22.27 0.22 -3.96 16 23 C -0.12 -3.98 10.05 22.27 0.22 -3.76 16 24 C -0.15 -5.72 9.67 22.27 0.22 -5.50 16 25 C -0.08 -2.04 1.70 -10.68 -0.02 -2.06 16 26 C -0.14 -2.80 4.98 30.69 0.15 -2.65 16 27 C 0.06 1.11 6.84 72.02 0.49 1.61 16 28 O -0.40 -10.16 10.77 -148.98 -1.60 -11.77 16 29 C 0.07 1.70 6.84 72.01 0.49 2.19 16 30 C -0.15 -4.42 5.22 30.69 0.16 -4.26 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.10 1.45 8.14 -2.39 -0.02 1.44 16 34 H 0.08 1.68 6.80 -2.39 -0.02 1.67 16 35 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.40 14.62 8.41 -92.72 -0.78 13.84 16 37 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 38 H 0.09 4.36 7.55 -2.91 -0.02 4.34 16 39 H 0.13 4.12 8.06 -2.91 -0.02 4.10 16 40 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 41 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 42 H 0.12 4.27 7.95 -2.91 -0.02 4.25 16 43 H 0.09 2.24 7.56 -2.38 -0.02 2.22 16 44 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 45 H 0.09 1.52 6.74 -2.39 -0.02 1.50 16 46 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 50 H 0.06 2.12 7.58 -2.39 -0.02 2.10 16 51 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -69.63 407.20 2.44 -67.19 By element: Atomic # 1 Polarization: 45.51 SS G_CDS: 0.12 Total: 45.63 kcal Atomic # 6 Polarization: -25.73 SS G_CDS: 5.22 Total: -20.51 kcal Atomic # 7 Polarization: -80.64 SS G_CDS: -1.64 Total: -82.28 kcal Atomic # 8 Polarization: -48.76 SS G_CDS: -3.10 Total: -51.87 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 1.84 Total: 41.84 kcal Total: -69.63 2.44 -67.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361911559.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.502 kcal (2) G-P(sol) polarization free energy of solvation -69.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds