Wall clock time and date at job start Wed Apr 1 2020 04:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46871 * 2 1 4 4 O 1.42895 * 109.47351 * 120.00124 * 2 1 3 5 5 C 1.42899 * 114.00069 * 89.99963 * 4 2 1 6 6 C 1.53002 * 109.47457 * 180.02562 * 5 4 2 7 7 H 1.09000 * 109.50757 * 304.90220 * 6 5 4 8 8 C 1.52874 * 109.62498 * 184.90878 * 6 5 4 9 9 N 1.47155 * 108.60456 * 187.89916 * 8 6 5 10 10 C 1.34778 * 120.97552 * 230.49932 * 9 8 6 11 11 O 1.21284 * 120.00689 * 359.71735 * 10 9 8 12 12 C 1.50710 * 119.99715 * 179.71909 * 10 9 8 13 13 H 1.08996 * 109.46931 * 59.99451 * 12 10 9 14 14 C 1.50700 * 109.46581 * 299.99715 * 12 10 9 15 15 H 1.07992 * 120.00594 * 334.06630 * 14 12 10 16 16 C 1.37882 * 119.99562 * 154.06971 * 14 12 10 17 17 N 1.31519 * 120.00230 * 5.34485 * 16 14 12 18 18 Si 1.86803 * 120.00020 * 185.35395 * 16 14 12 19 19 H 1.48504 * 109.46769 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47614 * 119.99669 * 18 16 14 21 21 H 1.48502 * 109.46597 * 239.99840 * 18 16 14 22 22 C 1.50697 * 109.47020 * 179.97438 * 12 10 9 23 23 C 1.38239 * 119.99795 * 65.57094 * 22 12 10 24 24 C 1.38238 * 119.99424 * 179.74250 * 23 22 12 25 25 C 1.38234 * 120.00245 * 0.52817 * 24 23 22 26 26 C 1.38231 * 119.99878 * 359.74472 * 25 24 23 27 27 C 1.38234 * 120.00029 * 245.84160 * 22 12 10 28 28 C 1.47148 * 118.04041 * 50.22521 * 9 8 6 29 29 C 1.53300 * 108.38454 * 309.71704 * 28 9 8 30 30 O 1.42960 * 109.51293 * 64.99681 * 6 5 4 31 31 H 1.08998 * 109.46918 * 299.99904 * 1 2 3 32 32 H 1.08991 * 109.47347 * 59.99719 * 1 2 3 33 33 H 1.09004 * 109.46963 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47241 * 240.00536 * 2 1 3 35 35 H 1.09003 * 109.47013 * 180.02562 * 3 2 1 36 36 H 1.08995 * 109.47805 * 300.00049 * 3 2 1 37 37 H 1.08998 * 109.47271 * 60.00313 * 3 2 1 38 38 H 1.09002 * 109.47431 * 59.99946 * 5 4 2 39 39 H 1.08997 * 109.47215 * 300.00280 * 5 4 2 40 40 H 1.08995 * 109.62005 * 68.07915 * 8 6 5 41 41 H 1.09000 * 109.52363 * 307.65649 * 8 6 5 42 42 H 0.96992 * 120.00202 * 180.02562 * 17 16 14 43 43 H 1.07994 * 120.00049 * 359.97438 * 23 22 12 44 44 H 1.07999 * 119.99914 * 180.29741 * 24 23 22 45 45 H 1.08004 * 120.00247 * 179.76846 * 25 24 23 46 46 H 1.07997 * 120.00221 * 179.97438 * 26 25 24 47 47 H 1.08004 * 119.99983 * 0.02562 * 27 22 12 48 48 H 1.09000 * 109.68318 * 69.43487 * 28 9 8 49 49 H 1.08997 * 109.68741 * 189.95743 * 28 9 8 50 50 H 1.08993 * 109.51358 * 172.22402 * 29 28 9 51 51 H 1.09003 * 109.51282 * 292.38022 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2002 -2.0782 0.9885 6 6 2.7080 -2.6927 2.2944 7 1 3.6078 -2.1691 2.6173 8 6 3.0326 -4.1703 2.0744 9 7 3.3348 -4.7837 3.3774 10 6 4.4528 -5.5147 3.5574 11 8 5.2247 -5.6792 2.6364 12 6 4.7438 -6.1276 4.9031 13 1 3.9372 -6.8088 5.1741 14 6 4.8505 -5.0381 5.9387 15 1 5.1388 -4.0398 5.6446 16 6 4.5800 -5.3159 7.2619 17 7 4.3318 -6.5518 7.6370 18 14 4.5657 -3.9368 8.5218 19 1 4.8736 -2.6490 7.8495 20 1 3.2243 -3.8575 9.1539 21 1 5.5887 -4.2078 9.5637 22 6 6.0429 -6.8886 4.8381 23 6 7.2298 -6.2128 4.6245 24 6 8.4221 -6.9103 4.5702 25 6 8.4262 -8.2846 4.7186 26 6 7.2387 -8.9609 4.9266 27 6 6.0471 -8.2629 4.9865 28 6 2.3837 -4.5704 4.4797 29 6 2.0934 -3.0687 4.5840 30 8 1.6999 -2.5752 3.3013 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5137 -0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6767 1.9564 -0.8899 37 1 1.6767 1.9563 0.8900 38 1 2.9320 -2.2467 0.1985 39 1 1.2539 -2.5433 0.7124 40 1 3.8968 -4.2612 1.4165 41 1 2.1740 -4.6688 1.6244 42 1 4.1412 -6.7472 8.5677 43 1 7.2260 -5.1396 4.5037 44 1 9.3499 -6.3819 4.4081 45 1 9.3573 -8.8300 4.6724 46 1 7.2419 -10.0347 5.0421 47 1 5.1192 -8.7914 5.1486 48 1 1.4587 -5.1097 4.2760 49 1 2.8182 -4.9265 5.4137 50 1 1.2892 -2.9023 5.3005 51 1 2.9911 -2.5465 4.9152 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362521025.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:20 Heat of formation + Delta-G solvation = -119.816607 kcal Electronic energy + Delta-G solvation = -31682.392489 eV Core-core repulsion = 27546.057320 eV Total energy + Delta-G solvation = -4136.335169 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.46044 -40.11702 -39.29889 -38.70767 -35.93015 -35.31365 -34.24379 -32.94222 -32.43793 -31.52288 -29.54345 -29.12086 -28.10023 -26.84190 -25.47138 -24.22118 -23.21012 -22.74989 -22.26590 -21.75461 -20.06405 -18.74154 -18.02149 -17.90335 -17.77071 -17.41888 -16.84363 -16.43399 -16.26084 -16.05748 -15.91347 -15.77656 -15.55046 -15.35869 -15.09068 -14.66073 -14.28316 -14.07151 -13.97031 -13.91617 -13.59773 -13.52070 -13.35887 -13.27076 -13.02134 -12.95975 -12.78325 -12.75628 -12.53600 -12.31536 -12.25780 -12.10530 -11.93323 -11.67771 -11.62757 -11.54782 -11.26563 -11.12675 -10.66704 -10.52721 -10.41969 -9.54749 -9.47168 -9.24500 -8.20560 -6.30111 0.77510 0.81480 1.40454 1.46153 1.54234 1.80402 2.07070 2.41288 2.60406 2.76742 3.07566 3.25112 3.81258 3.85886 3.90415 4.02162 4.12327 4.14783 4.19948 4.25144 4.28163 4.30207 4.32089 4.41454 4.44688 4.46875 4.52430 4.59755 4.61670 4.76568 4.79554 4.86748 4.91237 4.93295 4.95682 4.96513 4.97920 5.05886 5.11428 5.30113 5.35492 5.36640 5.44170 5.61614 5.67171 5.79449 5.83559 5.92978 6.12301 6.23533 6.33038 6.38195 6.50049 6.70657 7.32250 7.37412 8.86518 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.012147 B = 0.003169 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.636981 B = 8832.218756 C =10147.386095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.070 3.930 3 C -0.148 4.148 4 O -0.399 6.399 5 C 0.080 3.920 6 C 0.086 3.914 7 H 0.048 0.952 8 C 0.086 3.914 9 N -0.610 5.610 10 C 0.528 3.472 11 O -0.589 6.589 12 C 0.062 3.938 13 H 0.061 0.939 14 C -0.509 4.509 15 H 0.050 0.950 16 C 0.043 3.957 17 N -0.894 5.894 18 Si 0.941 3.059 19 H -0.269 1.269 20 H -0.266 1.266 21 H -0.288 1.288 22 C -0.034 4.034 23 C -0.111 4.111 24 C -0.137 4.137 25 C -0.144 4.144 26 C -0.131 4.131 27 C -0.135 4.135 28 C 0.064 3.936 29 C 0.056 3.944 30 O -0.378 6.378 31 H 0.052 0.948 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.055 0.945 36 H 0.091 0.909 37 H 0.054 0.946 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.268 0.732 43 H 0.092 0.908 44 H 0.133 0.867 45 H 0.146 0.854 46 H 0.139 0.861 47 H 0.106 0.894 48 H 0.075 0.925 49 H 0.122 0.878 50 H 0.125 0.875 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.688 7.380 -11.068 14.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.013 3.987 3 C -0.205 4.205 4 O -0.319 6.319 5 C 0.003 3.997 6 C 0.027 3.973 7 H 0.066 0.934 8 C -0.037 4.037 9 N -0.343 5.343 10 C 0.319 3.681 11 O -0.470 6.470 12 C 0.041 3.959 13 H 0.079 0.921 14 C -0.547 4.547 15 H 0.069 0.931 16 C -0.160 4.160 17 N -0.530 5.530 18 Si 0.766 3.234 19 H -0.194 1.194 20 H -0.191 1.191 21 H -0.215 1.215 22 C -0.035 4.035 23 C -0.129 4.129 24 C -0.155 4.155 25 C -0.162 4.162 26 C -0.149 4.149 27 C -0.154 4.154 28 C -0.059 4.059 29 C -0.021 4.021 30 O -0.297 6.297 31 H 0.071 0.929 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.110 0.890 37 H 0.073 0.927 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.077 0.923 43 H 0.110 0.890 44 H 0.151 0.849 45 H 0.163 0.837 46 H 0.156 0.844 47 H 0.124 0.876 48 H 0.093 0.907 49 H 0.140 0.860 50 H 0.143 0.857 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.503 7.353 -11.251 14.524 hybrid contribution 0.192 0.317 0.971 1.039 sum -5.311 7.671 -10.280 13.883 Atomic orbital electron populations 1.22262 0.95284 1.02370 1.02885 1.22346 0.94402 0.94227 0.87720 1.21877 1.01477 0.94057 1.03102 1.87966 1.86948 1.19801 1.37229 1.22420 1.01193 0.81927 0.94192 1.22290 0.91438 0.93934 0.89638 0.93438 1.22032 1.02498 0.92806 0.86324 1.48000 1.22747 1.51501 1.12005 1.21527 0.79105 0.76869 0.90587 1.90541 1.48512 1.62766 1.45208 1.17948 0.93084 0.95723 0.89142 0.92097 1.20591 1.48406 0.94158 0.91530 0.93146 1.25450 0.93994 0.97163 0.99440 1.70034 1.45969 1.19163 1.17876 0.85755 0.78294 0.80032 0.79271 1.19361 1.19099 1.21476 1.20074 0.96054 0.93421 0.93918 1.20820 0.93065 0.98824 1.00207 1.21301 0.97543 0.95257 1.01421 1.21248 0.98563 0.94127 1.02234 1.21291 0.92389 1.00383 1.00805 1.21086 0.98468 0.93933 1.01885 1.22830 0.92724 0.97399 0.92911 1.22967 1.01369 0.92579 0.85224 1.87933 1.39436 1.83108 1.19245 0.92863 0.89737 0.92758 0.90859 0.92561 0.89014 0.92721 0.89897 0.91180 0.89235 0.89447 0.92276 0.88961 0.84870 0.83674 0.84361 0.87578 0.90668 0.86032 0.85676 0.93937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.74 9.53 71.98 0.69 -2.05 16 2 C 0.07 1.28 3.34 30.59 0.10 1.38 16 3 C -0.15 -2.34 9.56 71.98 0.69 -1.65 16 4 O -0.40 -10.32 9.95 -144.45 -1.44 -11.76 16 5 C 0.08 1.88 5.42 71.98 0.39 2.27 16 6 C 0.09 2.59 3.04 30.55 0.09 2.68 16 7 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 8 C 0.09 2.76 5.90 86.21 0.51 3.27 16 9 N -0.61 -23.62 3.03 -818.15 -2.48 -26.09 16 10 C 0.53 24.25 6.99 87.66 0.61 24.87 16 11 O -0.59 -29.40 14.87 -3.04 -0.05 -29.45 16 12 C 0.06 3.00 1.45 -13.03 -0.02 2.98 16 13 H 0.06 3.13 7.29 -2.39 -0.02 3.11 16 14 C -0.51 -25.06 5.13 25.60 0.13 -24.93 16 15 H 0.05 2.57 7.81 -2.91 -0.02 2.55 16 16 C 0.04 2.10 5.18 84.65 0.44 2.54 16 17 N -0.89 -46.07 13.00 21.45 0.28 -45.79 16 18 Si 0.94 39.49 29.54 68.60 2.03 41.51 16 19 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 20 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 21 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 22 C -0.03 -1.62 4.31 -19.87 -0.09 -1.71 16 23 C -0.11 -5.13 8.28 22.27 0.18 -4.95 16 24 C -0.14 -5.33 10.05 22.27 0.22 -5.11 16 25 C -0.14 -5.06 10.05 22.27 0.22 -4.84 16 26 C -0.13 -4.90 10.05 22.27 0.22 -4.68 16 27 C -0.14 -6.03 9.67 22.27 0.22 -5.82 16 28 C 0.06 2.26 6.15 86.36 0.53 2.79 16 29 C 0.06 1.79 6.99 72.08 0.50 2.29 16 30 O -0.38 -12.15 10.35 -144.45 -1.50 -13.64 16 31 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.05 0.90 7.87 -2.38 -0.02 0.88 16 34 H 0.07 1.10 7.79 -2.39 -0.02 1.08 16 35 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.08 1.62 8.09 -2.39 -0.02 1.60 16 39 H 0.07 1.48 7.87 -2.39 -0.02 1.46 16 40 H 0.09 2.99 7.08 -2.39 -0.02 2.98 16 41 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.27 13.19 8.31 -92.71 -0.77 12.42 16 43 H 0.09 4.45 7.91 -2.91 -0.02 4.42 16 44 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 45 H 0.15 3.90 8.06 -2.91 -0.02 3.87 16 46 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 47 H 0.11 4.65 7.95 -2.91 -0.02 4.63 16 48 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 49 H 0.12 4.99 4.39 -2.39 -0.01 4.98 16 50 H 0.13 3.34 8.14 -2.39 -0.02 3.32 16 51 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -63.09 411.09 3.40 -59.68 By element: Atomic # 1 Polarization: 35.32 SS G_CDS: 0.90 Total: 36.21 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: 5.65 Total: -10.68 kcal Atomic # 7 Polarization: -69.69 SS G_CDS: -2.20 Total: -71.88 kcal Atomic # 8 Polarization: -51.87 SS G_CDS: -2.98 Total: -54.85 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.51 kcal Total: -63.09 3.40 -59.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362521025.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.132 kcal (2) G-P(sol) polarization free energy of solvation -63.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds