Wall clock time and date at job start Wed Apr 1 2020 05:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34236 * 116.99595 * 2 1 4 4 O 1.20827 * 119.99765 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99889 * 179.97438 * 3 2 1 6 6 H 1.08999 * 109.46937 * 300.00080 * 5 3 2 7 7 C 1.52996 * 109.46933 * 60.00135 * 5 3 2 8 8 O 1.42896 * 109.47221 * 55.00113 * 7 5 3 9 9 C 1.42895 * 114.00420 * 179.97438 * 8 7 5 10 10 C 1.53778 * 113.61733 * 249.14015 * 9 8 7 11 11 C 1.53956 * 87.02219 * 220.04406 * 10 9 8 12 12 C 1.53777 * 113.62039 * 151.52906 * 9 8 7 13 13 N 1.46899 * 109.47159 * 180.02562 * 5 3 2 14 14 C 1.46898 * 110.99858 * 183.95565 * 13 5 3 15 15 C 1.46896 * 110.99956 * 59.99786 * 13 5 3 16 16 C 1.50706 * 109.47178 * 189.99996 * 15 13 5 17 17 C 1.38639 * 119.74839 * 90.00073 * 16 15 13 18 18 C 1.37620 * 120.24897 * 180.23652 * 17 16 15 19 19 C 1.40715 * 119.74131 * 359.51904 * 18 17 16 20 20 C 1.41399 * 120.24183 * 180.22985 * 19 18 17 21 21 H 1.07996 * 120.00044 * 204.52621 * 20 19 18 22 22 C 1.39950 * 119.99773 * 24.53568 * 20 19 18 23 23 N 1.30821 * 119.99991 * 17.71280 * 22 20 19 24 24 Si 1.86800 * 119.99756 * 197.70913 * 22 20 19 25 25 H 1.48506 * 109.46742 * 59.99979 * 24 22 20 26 26 H 1.48505 * 109.46999 * 179.97438 * 24 22 20 27 27 H 1.48491 * 109.47336 * 300.00007 * 24 22 20 28 28 C 1.40715 * 119.51261 * 0.47567 * 19 18 17 29 29 C 1.37609 * 119.74608 * 359.75586 * 28 19 18 30 30 H 1.09002 * 109.46799 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47487 * 299.99845 * 1 2 3 32 32 H 1.09000 * 109.46989 * 60.00012 * 1 2 3 33 33 H 1.09004 * 109.47117 * 175.00082 * 7 5 3 34 34 H 1.08995 * 109.47263 * 294.99953 * 7 5 3 35 35 H 1.09007 * 112.84733 * 20.33242 * 9 8 7 36 36 H 1.09002 * 113.61319 * 334.56095 * 10 9 8 37 37 H 1.09004 * 113.61697 * 105.46987 * 10 9 8 38 38 H 1.08998 * 113.53421 * 270.81270 * 11 10 9 39 39 H 1.09000 * 113.67274 * 139.92853 * 11 10 9 40 40 H 1.09003 * 113.61320 * 254.53299 * 12 9 8 41 41 H 1.09008 * 113.61303 * 25.34568 * 12 9 8 42 42 H 1.08996 * 109.46945 * 296.03957 * 14 13 5 43 43 H 1.08993 * 109.47396 * 56.04518 * 14 13 5 44 44 H 1.09007 * 109.46575 * 176.04500 * 14 13 5 45 45 H 1.08994 * 109.47371 * 70.00485 * 15 13 5 46 46 H 1.09001 * 109.47873 * 309.99749 * 15 13 5 47 47 H 1.08000 * 119.87572 * 359.95847 * 17 16 15 48 48 H 1.07993 * 120.12561 * 179.72165 * 18 17 16 49 49 H 0.97005 * 119.99803 * 180.02562 * 23 22 20 50 50 H 1.08000 * 120.12510 * 179.73128 * 28 19 18 51 51 H 1.08002 * 119.87647 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9557 0.7811 0.8908 7 6 4.1138 0.5813 -1.2483 8 8 3.5138 1.1528 -2.4124 9 6 3.9594 0.5733 -3.6402 10 6 4.8227 1.5199 -4.4907 11 6 4.0763 0.9674 -5.7187 12 6 2.9146 0.6373 -4.7667 13 7 3.9828 2.6838 0.0011 14 6 5.4440 2.8007 -0.0929 15 6 3.4739 3.3827 1.1887 16 6 3.7060 4.8641 1.0377 17 6 2.7365 5.6549 0.4405 18 6 2.9397 7.0080 0.2929 19 6 4.1328 7.5898 0.7601 20 6 4.3506 8.9797 0.6183 21 1 5.3577 9.3688 0.5949 22 6 3.2609 9.8510 0.5085 23 7 2.0688 9.4571 0.8760 24 14 3.5088 11.5765 -0.1627 25 1 4.0458 11.4974 -1.5451 26 1 2.2084 12.2935 -0.1776 27 1 4.4692 12.3101 0.7001 28 6 5.1098 6.7773 1.3646 29 6 4.8872 5.4258 1.4973 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 5.1947 0.7150 -1.2938 34 1 3.8809 -0.4826 -1.2046 35 1 4.3976 -0.4159 -3.5068 36 1 4.6295 2.5758 -4.3010 37 1 5.8844 1.2735 -4.4767 38 1 4.5475 0.0865 -6.1544 39 1 3.8306 1.7277 -6.4601 40 1 2.4380 -0.3207 -4.9751 41 1 2.1978 1.4505 -4.6518 42 1 5.9014 2.3618 0.7937 43 1 5.7943 2.2745 -0.9809 44 1 5.7206 3.8529 -0.1614 45 1 3.9964 3.0216 2.0745 46 1 2.4060 3.1912 1.2935 47 1 1.8201 5.2068 0.0857 48 1 2.1850 7.6215 -0.1766 49 1 1.3135 10.0609 0.7995 50 1 6.0310 7.2127 1.7227 51 1 5.6358 4.8002 1.9605 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363795962.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:53 Heat of formation + Delta-G solvation = -69.543520 kcal Electronic energy + Delta-G solvation = -31378.304059 eV Core-core repulsion = 27244.148895 eV Total energy + Delta-G solvation = -4134.155164 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.62212 -39.28186 -38.15290 -37.01426 -36.20203 -35.38984 -33.58815 -31.13711 -29.63574 -29.02408 -27.69851 -27.17837 -25.80184 -25.56236 -24.64141 -23.41098 -22.26174 -20.81120 -20.21335 -19.76550 -19.61771 -17.86961 -17.18415 -17.02724 -16.65663 -16.39136 -15.76979 -15.58697 -15.23978 -14.75605 -14.46895 -14.26325 -14.18002 -13.82144 -13.51178 -13.20183 -13.10412 -12.82999 -12.51164 -12.40463 -12.33680 -12.30201 -12.04069 -11.86060 -11.76983 -11.45727 -11.35070 -11.31933 -11.09899 -10.97523 -10.85752 -10.79706 -10.67710 -10.51002 -10.42522 -10.29898 -9.81220 -9.47979 -9.41430 -9.20549 -9.02597 -7.96468 -7.29461 -7.17648 -6.66137 -4.24641 2.37489 2.63966 2.85121 3.11682 3.14294 3.19839 3.26721 3.57246 4.00002 4.16790 4.46921 4.49475 4.65817 4.72864 4.77596 4.80269 4.88701 5.06368 5.08508 5.14996 5.19452 5.25053 5.34339 5.49415 5.54773 5.60475 5.67418 5.68497 5.74418 5.84064 5.86049 5.92908 6.03735 6.09636 6.20270 6.30074 6.36743 6.43068 6.56759 6.68541 7.10059 7.15907 7.19401 7.33156 7.35840 7.43864 7.52774 7.75119 7.95103 8.00517 8.16926 8.31550 8.42014 8.76975 9.00237 9.10168 10.28291 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.010757 B = 0.002831 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.287175 B = 9886.915376 C =10813.248501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.367 6.367 3 C 0.469 3.531 4 O -0.469 6.469 5 C 0.095 3.905 6 H 0.083 0.917 7 C 0.071 3.929 8 O -0.351 6.351 9 C 0.060 3.940 10 C -0.156 4.156 11 C -0.143 4.143 12 C -0.136 4.136 13 N -0.506 5.506 14 C 0.026 3.974 15 C 0.105 3.895 16 C -0.199 4.199 17 C -0.071 4.071 18 C -0.168 4.168 19 C 0.113 3.887 20 C -0.466 4.466 21 H 0.075 0.925 22 C 0.077 3.923 23 N -0.793 5.793 24 Si 0.906 3.094 25 H -0.264 1.264 26 H -0.279 1.279 27 H -0.267 1.267 28 C -0.229 4.229 29 C -0.087 4.087 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.091 0.909 42 H 0.019 0.981 43 H 0.063 0.937 44 H 0.089 0.911 45 H 0.017 0.983 46 H 0.089 0.911 47 H 0.090 0.910 48 H 0.115 0.885 49 H 0.280 0.720 50 H 0.088 0.912 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.584 -20.999 -6.598 22.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.284 6.284 3 C 0.309 3.691 4 O -0.352 6.352 5 C -0.015 4.015 6 H 0.101 0.899 7 C -0.006 4.006 8 O -0.269 6.269 9 C 0.002 3.998 10 C -0.193 4.193 11 C -0.180 4.180 12 C -0.173 4.173 13 N -0.232 5.232 14 C -0.122 4.122 15 C -0.021 4.021 16 C -0.201 4.201 17 C -0.090 4.090 18 C -0.188 4.188 19 C 0.111 3.889 20 C -0.495 4.495 21 H 0.093 0.907 22 C -0.141 4.141 23 N -0.419 5.419 24 Si 0.731 3.269 25 H -0.189 1.189 26 H -0.204 1.204 27 H -0.191 1.191 28 C -0.249 4.249 29 C -0.106 4.106 30 H 0.115 0.885 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.113 0.887 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.110 0.890 42 H 0.037 0.963 43 H 0.081 0.919 44 H 0.107 0.893 45 H 0.036 0.964 46 H 0.107 0.893 47 H 0.109 0.891 48 H 0.133 0.867 49 H 0.091 0.909 50 H 0.107 0.893 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.741 -20.235 -6.961 21.412 hybrid contribution 0.396 0.308 0.494 0.704 sum 1.137 -19.927 -6.467 20.981 Atomic orbital electron populations 1.23190 0.76538 1.03157 1.02667 1.86443 1.23248 1.33844 1.84832 1.23259 0.91392 0.81398 0.73045 1.90673 1.66358 1.35691 1.42512 1.21267 0.88554 0.93475 0.98174 0.89949 1.22561 0.97593 0.95704 0.84749 1.88158 1.65762 1.60474 1.12549 1.23722 0.96306 0.96028 0.83715 1.23510 0.98839 1.01481 0.95507 1.22679 0.97514 1.01200 0.96612 1.23172 0.97255 1.02479 0.94415 1.61910 1.11567 1.06938 1.42771 1.22500 0.86266 1.04215 0.99186 1.21139 1.00610 0.92842 0.87479 1.18740 0.97227 0.92062 1.12037 1.20556 0.97023 0.93788 0.97631 1.21310 0.99864 0.93082 1.04520 1.17602 0.91007 0.92841 0.87481 1.19542 0.93635 0.91605 1.44746 0.90683 1.25891 0.94654 1.00793 0.92760 1.69833 1.00692 1.37449 1.33895 0.86411 0.78384 0.81573 0.80560 1.18877 1.20405 1.19123 1.20892 1.01230 0.93579 1.09194 1.20343 0.95465 0.94683 1.00068 0.88489 0.92023 0.91871 0.91543 0.92122 0.89996 0.88689 0.91570 0.90302 0.90794 0.91377 0.89045 0.96290 0.91863 0.89259 0.96445 0.89339 0.89140 0.86669 0.90937 0.89341 0.90087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.56 101.05 1.07 1.46 16 2 O -0.37 -4.69 10.49 -39.27 -0.41 -5.10 16 3 C 0.47 7.23 6.42 36.01 0.23 7.46 16 4 O -0.47 -8.95 13.63 -18.75 -0.26 -9.20 16 5 C 0.10 1.31 2.38 -68.87 -0.16 1.14 16 6 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 7 C 0.07 0.81 5.04 37.16 0.19 1.00 16 8 O -0.35 -4.84 9.78 -35.23 -0.34 -5.19 16 9 C 0.06 0.64 4.29 -25.92 -0.11 0.52 16 10 C -0.16 -1.60 7.93 -25.83 -0.20 -1.80 16 11 C -0.14 -1.23 8.09 -25.83 -0.21 -1.44 16 12 C -0.14 -1.34 7.91 -25.92 -0.21 -1.54 16 13 N -0.51 -8.58 4.37 -237.74 -1.04 -9.62 16 14 C 0.03 0.38 8.77 60.06 0.53 0.91 16 15 C 0.10 2.01 4.71 -4.98 -0.02 1.99 16 16 C -0.20 -4.55 4.91 -104.32 -0.51 -5.06 16 17 C -0.07 -1.80 9.67 -39.66 -0.38 -2.19 16 18 C -0.17 -4.62 8.70 -38.87 -0.34 -4.96 16 19 C 0.11 3.13 5.57 -106.82 -0.60 2.53 16 20 C -0.47 -12.78 9.06 -37.74 -0.34 -13.12 16 21 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 22 C 0.08 1.99 5.14 -17.34 -0.09 1.90 16 23 N -0.79 -21.34 10.95 55.55 0.61 -20.73 16 24 Si 0.91 19.31 29.59 -169.99 -5.03 14.28 16 25 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 26 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 27 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 28 C -0.23 -5.78 9.80 -38.88 -0.38 -6.16 16 29 C -0.09 -1.97 7.93 -39.66 -0.31 -2.29 16 30 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 32 H 0.06 0.68 8.13 -51.93 -0.42 0.25 16 33 H 0.07 0.67 5.98 -51.93 -0.31 0.35 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.69 7.88 -51.92 -0.41 0.28 16 36 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 1.06 8.14 -51.92 -0.42 0.64 16 42 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 43 H 0.06 0.81 5.91 -51.93 -0.31 0.50 16 44 H 0.09 1.56 6.16 -51.93 -0.32 1.24 16 45 H 0.02 0.31 8.06 -51.93 -0.42 -0.11 16 46 H 0.09 1.81 5.15 -51.93 -0.27 1.54 16 47 H 0.09 2.27 8.06 -52.49 -0.42 1.85 16 48 H 0.12 3.29 6.16 -52.49 -0.32 2.96 16 49 H 0.28 6.87 8.30 -40.82 -0.34 6.54 16 50 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 51 H 0.08 1.62 8.02 -52.49 -0.42 1.20 16 LS Contribution 410.33 15.07 6.18 6.18 Total: -1.00 -31.55 410.33 -10.40 -41.94 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -8.24 Total: 7.09 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -1.86 Total: -19.66 kcal Atomic # 7 Polarization: -29.92 SS G_CDS: -0.43 Total: -30.35 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -1.01 Total: -19.49 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.55 -10.40 -41.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363795962.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.600 kcal (2) G-P(sol) polarization free energy of solvation -31.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds