Wall clock time and date at job start Wed Apr 1 2020 05:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35996 * 116.99785 * 2 1 4 4 C 1.38371 * 120.16326 * 359.97438 * 3 2 1 5 5 C 1.38689 * 120.38436 * 179.97438 * 4 3 2 6 6 C 1.37827 * 119.98254 * 0.11145 * 5 4 3 7 7 C 1.38809 * 119.85491 * 359.82364 * 6 5 4 8 8 C 1.38354 * 120.39001 * 0.12246 * 7 6 5 9 9 O 1.36000 * 120.13961 * 179.97438 * 8 7 6 10 10 C 1.42901 * 117.00280 * 0.02562 * 9 8 7 11 11 C 1.50662 * 121.87745 * 179.80724 * 6 5 4 12 12 H 1.09000 * 109.26742 * 257.18745 * 11 6 5 13 13 C 1.53002 * 109.26772 * 137.67988 * 11 6 5 14 14 C 1.53002 * 117.49201 * 137.38154 * 13 11 6 15 15 C 1.52994 * 117.49802 * 68.72510 * 13 11 6 16 16 N 1.46621 * 110.46394 * 17.43436 * 11 6 5 17 17 C 1.46909 * 110.99444 * 184.04187 * 16 11 6 18 18 C 1.52999 * 109.46874 * 197.82379 * 17 16 11 19 19 H 1.08999 * 109.47190 * 52.80989 * 18 17 16 20 20 O 1.42903 * 109.47253 * 292.80633 * 18 17 16 21 21 C 1.50701 * 109.47241 * 172.81024 * 18 17 16 22 22 H 1.08006 * 119.99648 * 359.97438 * 21 18 17 23 23 C 1.37869 * 120.00311 * 179.97438 * 21 18 17 24 24 N 1.31514 * 120.00335 * 359.97438 * 23 21 18 25 25 Si 1.86801 * 120.00041 * 179.97438 * 23 21 18 26 26 H 1.48501 * 109.47169 * 90.00368 * 25 23 21 27 27 H 1.48504 * 109.47278 * 210.00113 * 25 23 21 28 28 H 1.48506 * 109.47277 * 330.00046 * 25 23 21 29 29 C 1.47165 * 110.22625 * 307.44017 * 16 11 6 30 30 C 1.50744 * 118.39378 * 180.15325 * 5 4 3 31 31 H 1.08997 * 109.47286 * 299.99939 * 1 2 3 32 32 H 1.08998 * 109.46977 * 59.99919 * 1 2 3 33 33 H 1.09002 * 109.47027 * 179.97438 * 1 2 3 34 34 H 1.07994 * 119.81055 * 359.97110 * 4 3 2 35 35 H 1.08001 * 119.81584 * 180.08776 * 7 6 5 36 36 H 1.08996 * 109.46448 * 60.00367 * 10 9 8 37 37 H 1.08997 * 109.47118 * 179.97438 * 10 9 8 38 38 H 1.08997 * 109.46949 * 300.00420 * 10 9 8 39 39 H 1.08999 * 115.55051 * 283.04516 * 13 11 6 40 40 H 1.08993 * 117.50353 * 359.97438 * 14 13 11 41 41 H 1.09009 * 117.49358 * 145.02120 * 14 13 11 42 42 H 1.09007 * 117.49394 * 214.97250 * 15 13 11 43 43 H 1.08998 * 117.50550 * 359.96891 * 15 13 11 44 44 H 1.08994 * 109.47315 * 317.82155 * 17 16 11 45 45 H 1.09002 * 109.46852 * 77.82568 * 17 16 11 46 46 H 0.96703 * 114.00035 * 300.00460 * 20 18 17 47 47 H 0.96996 * 120.00602 * 180.02562 * 24 23 21 48 48 H 1.09000 * 109.63265 * 191.04521 * 29 16 11 49 49 H 1.08994 * 109.63468 * 311.43909 * 29 16 11 50 50 H 1.08997 * 109.38545 * 76.53677 * 30 5 4 51 51 H 1.09005 * 109.30211 * 316.80193 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2960 2.3743 -0.0005 5 6 1.9209 3.6125 0.0000 6 6 3.2970 3.6896 -0.0013 7 6 4.0542 2.5263 0.0007 8 6 3.4358 1.2886 0.0013 9 8 4.1827 0.1521 0.0026 10 6 5.6031 0.3091 0.0039 11 6 4.0198 5.0115 -0.0050 12 1 4.3918 5.2151 -1.0092 13 6 5.1998 4.9445 0.9666 14 6 6.5252 5.5586 0.5116 15 6 6.3734 4.0375 0.5912 16 7 3.1162 6.0910 0.4046 17 6 3.7816 7.3976 0.3131 18 6 3.0066 8.4238 1.1420 19 1 2.8675 8.0431 2.1539 20 8 1.7311 8.6562 0.5410 21 6 3.7805 9.7158 1.1934 22 1 4.7304 9.7968 0.6858 23 6 3.2760 10.7945 1.8882 24 7 2.1191 10.6961 2.5058 25 14 4.2357 12.3958 1.9523 26 1 3.8350 13.2591 0.8124 27 1 3.9456 13.0961 3.2294 28 1 5.6896 12.1055 1.8663 29 6 1.8906 6.0652 -0.4097 30 6 1.0599 4.8499 0.0029 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 0.2176 2.3173 -0.0014 35 1 5.1325 2.5874 0.0011 36 1 5.9067 0.8601 0.8939 37 1 6.0771 -0.6724 0.0054 38 1 5.9086 0.8593 -0.8860 39 1 4.9440 5.0254 2.0231 40 1 6.5567 6.0099 -0.4800 41 1 7.1417 6.0431 1.2689 42 1 6.8900 3.5219 1.4009 43 1 6.3047 3.4881 -0.3477 44 1 4.7988 7.3149 0.6959 45 1 3.8102 7.7186 -0.7282 46 1 1.7784 8.9966 -0.3629 47 1 1.7639 11.4551 2.9943 48 1 1.3174 6.9762 -0.2377 49 1 2.1535 5.9918 -1.4649 50 1 0.6584 5.0089 1.0037 51 1 0.2374 4.7182 -0.7001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364494444.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:24 Heat of formation + Delta-G solvation = -72.837329 kcal Electronic energy + Delta-G solvation = -32058.937909 eV Core-core repulsion = 27924.639914 eV Total energy + Delta-G solvation = -4134.297995 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.96282 -40.36384 -39.39712 -38.11951 -37.80260 -36.11861 -34.21079 -33.24163 -32.01942 -30.40376 -29.62298 -28.53483 -28.06180 -26.66101 -25.05380 -24.14751 -23.66737 -22.83081 -22.07831 -21.59620 -20.65265 -19.10000 -18.99343 -17.85329 -17.79998 -17.00612 -16.75407 -16.60138 -16.53125 -16.41691 -16.11281 -15.91850 -15.73001 -15.20409 -15.19130 -15.09225 -14.76947 -14.41079 -13.95237 -13.77801 -13.57098 -13.34540 -13.20776 -13.03606 -12.92344 -12.82747 -12.74307 -12.57512 -12.43853 -12.35904 -12.14162 -12.03862 -12.00261 -11.84624 -11.70810 -11.29897 -11.09378 -10.97525 -10.77777 -10.67163 -9.93673 -9.60409 -9.08365 -8.65677 -8.09244 -6.34556 0.29303 0.41749 1.41752 1.42770 1.53013 2.36286 2.38513 2.40728 2.64335 2.76764 3.11172 3.16380 3.67117 3.72559 3.80448 3.99299 4.04803 4.08043 4.16647 4.21756 4.27140 4.32086 4.37700 4.41013 4.41572 4.43049 4.47586 4.54041 4.58994 4.63032 4.67111 4.73823 4.75042 4.76748 4.82293 4.89146 4.99520 5.05730 5.07256 5.19255 5.23111 5.24585 5.30166 5.41848 5.56091 5.67275 5.76363 5.81638 6.08217 6.12566 6.34527 6.35877 6.63657 6.78762 7.37336 7.58580 8.94668 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.016000 B = 0.002969 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.595168 B = 9427.728543 C =10884.498351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.328 6.328 3 C 0.084 3.916 4 C -0.174 4.174 5 C -0.073 4.073 6 C -0.078 4.078 7 C -0.176 4.176 8 C 0.078 3.922 9 O -0.327 6.327 10 C 0.015 3.985 11 C 0.160 3.840 12 H 0.043 0.957 13 C -0.153 4.153 14 C -0.177 4.177 15 C -0.164 4.164 16 N -0.531 5.531 17 C 0.051 3.949 18 C 0.243 3.757 19 H 0.020 0.980 20 O -0.568 6.568 21 C -0.582 4.582 22 H 0.058 0.942 23 C 0.027 3.973 24 N -0.898 5.898 25 Si 0.956 3.044 26 H -0.273 1.273 27 H -0.286 1.286 28 H -0.265 1.265 29 C 0.035 3.965 30 C -0.066 4.066 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.119 0.881 34 H 0.153 0.847 35 H 0.170 0.830 36 H 0.062 0.938 37 H 0.120 0.880 38 H 0.063 0.937 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.115 0.885 43 H 0.109 0.891 44 H 0.077 0.923 45 H 0.024 0.976 46 H 0.352 0.648 47 H 0.260 0.740 48 H 0.104 0.896 49 H 0.029 0.971 50 H 0.070 0.930 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.705 -20.767 -7.887 22.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.242 6.242 3 C 0.039 3.961 4 C -0.193 4.193 5 C -0.074 4.074 6 C -0.079 4.079 7 C -0.194 4.194 8 C 0.033 3.967 9 O -0.242 6.242 10 C -0.079 4.079 11 C 0.052 3.948 12 H 0.060 0.940 13 C -0.171 4.171 14 C -0.214 4.214 15 C -0.200 4.200 16 N -0.255 5.255 17 C -0.077 4.077 18 C 0.186 3.814 19 H 0.037 0.963 20 O -0.372 6.372 21 C -0.620 4.620 22 H 0.077 0.923 23 C -0.175 4.175 24 N -0.535 5.535 25 Si 0.781 3.219 26 H -0.199 1.199 27 H -0.212 1.212 28 H -0.189 1.189 29 C -0.092 4.092 30 C -0.103 4.103 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.138 0.862 34 H 0.171 0.829 35 H 0.187 0.813 36 H 0.081 0.919 37 H 0.138 0.862 38 H 0.082 0.918 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.117 0.883 42 H 0.133 0.867 43 H 0.127 0.873 44 H 0.096 0.904 45 H 0.042 0.958 46 H 0.196 0.804 47 H 0.069 0.931 48 H 0.121 0.879 49 H 0.047 0.953 50 H 0.089 0.911 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.253 -21.378 -6.689 22.636 hybrid contribution 0.608 1.765 -0.902 2.073 sum 3.861 -19.614 -7.591 21.383 Atomic orbital electron populations 1.23326 0.76773 1.05463 1.02079 1.86118 1.23050 1.25831 1.89231 1.18396 0.89586 0.85523 1.02597 1.21118 1.00784 0.90166 1.07220 1.19542 0.93342 0.94760 0.99751 1.19347 0.92883 0.94009 1.01618 1.21760 1.02538 0.89531 1.05589 1.18337 0.88519 0.86516 1.03325 1.86118 1.20372 1.28318 1.89355 1.23366 0.77016 1.05418 1.02111 1.19850 0.91150 0.88498 0.95304 0.93965 1.22102 0.88710 1.06951 0.99378 1.23092 0.99102 0.96329 1.02891 1.23222 1.00085 0.92895 1.03830 1.62218 1.05758 1.02793 1.54701 1.22694 0.98650 0.88458 0.97900 1.19118 0.80675 0.90515 0.91126 0.96254 1.86492 1.32954 1.86334 1.31415 1.22000 1.06766 0.98829 1.34438 0.92338 1.25847 0.95412 1.02248 0.93996 1.70218 1.19174 1.31596 1.32496 0.85616 0.79305 0.79520 0.77451 1.19878 1.21163 1.18942 1.22593 0.92111 1.00821 0.93669 1.20466 0.96935 0.90523 1.02371 0.92129 0.91765 0.86234 0.82924 0.81309 0.91931 0.86152 0.91842 0.88909 0.88913 0.88300 0.86699 0.87264 0.90449 0.95793 0.80356 0.93128 0.87862 0.95319 0.91140 0.88747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.33 -8.33 10.29 -79.83 -0.82 -9.15 16 3 C 0.08 2.31 6.70 22.52 0.15 2.47 16 4 C -0.17 -4.50 8.66 22.41 0.19 -4.30 16 5 C -0.07 -2.14 5.77 -19.84 -0.11 -2.26 16 6 C -0.08 -2.30 5.48 -19.84 -0.11 -2.41 16 7 C -0.18 -4.55 7.97 22.43 0.18 -4.37 16 8 C 0.08 2.14 6.69 22.52 0.15 2.29 16 9 O -0.33 -8.23 10.29 -79.86 -0.82 -9.05 16 10 C 0.02 0.23 9.81 113.37 1.11 1.35 16 11 C 0.16 4.93 1.96 44.21 0.09 5.02 16 12 H 0.04 1.30 7.97 -2.39 -0.02 1.28 16 13 C -0.15 -4.27 4.07 -10.79 -0.04 -4.31 16 14 C -0.18 -4.25 8.93 30.62 0.27 -3.98 16 15 C -0.16 -3.21 8.16 30.62 0.25 -2.96 16 16 N -0.53 -19.38 4.38 -875.67 -3.83 -23.21 16 17 C 0.05 2.06 4.58 86.30 0.40 2.45 16 18 C 0.24 12.30 3.03 29.85 0.09 12.39 16 19 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 20 O -0.57 -28.29 9.81 -148.98 -1.46 -29.75 16 21 C -0.58 -31.44 8.75 25.60 0.22 -31.22 16 22 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 23 C 0.03 1.52 5.40 84.65 0.46 1.98 16 24 N -0.90 -53.40 12.84 21.44 0.28 -53.13 16 25 Si 0.96 42.96 29.54 68.60 2.03 44.99 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 27 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 28 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 29 C 0.04 1.19 5.38 86.21 0.46 1.66 16 30 C -0.07 -1.93 5.94 29.82 0.18 -1.76 16 31 H 0.06 0.88 7.67 -2.39 -0.02 0.86 16 32 H 0.06 0.87 7.66 -2.39 -0.02 0.85 16 33 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.15 3.12 6.29 -2.91 -0.02 3.10 16 35 H 0.17 3.52 1.86 -2.91 -0.01 3.51 16 36 H 0.06 0.86 7.66 -2.39 -0.02 0.84 16 37 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.06 0.82 7.66 -2.39 -0.02 0.80 16 39 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 40 H 0.09 2.21 8.11 -2.39 -0.02 2.20 16 41 H 0.10 2.33 8.14 -2.38 -0.02 2.31 16 42 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16 43 H 0.11 1.83 6.39 -2.39 -0.02 1.82 16 44 H 0.08 3.09 5.72 -2.39 -0.01 3.08 16 45 H 0.02 0.94 8.01 -2.39 -0.02 0.92 16 46 H 0.35 15.49 8.95 -74.06 -0.66 14.83 16 47 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 48 H 0.10 3.91 4.84 -2.39 -0.01 3.90 16 49 H 0.03 0.91 8.05 -2.39 -0.02 0.89 16 50 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 51 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 Total: -1.00 -69.51 393.58 0.71 -68.80 By element: Atomic # 1 Polarization: 36.76 SS G_CDS: 0.30 Total: 37.06 kcal Atomic # 6 Polarization: -31.62 SS G_CDS: 5.05 Total: -26.57 kcal Atomic # 7 Polarization: -72.78 SS G_CDS: -3.56 Total: -76.34 kcal Atomic # 8 Polarization: -44.84 SS G_CDS: -3.10 Total: -47.94 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -69.51 0.71 -68.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364494444.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.034 kcal (2) G-P(sol) polarization free energy of solvation -69.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds