Wall clock time and date at job start Wed Apr 1 2020 05:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42904 * 113.99495 * 2 1 4 4 C 1.53003 * 109.46749 * 180.54747 * 3 2 1 5 5 N 1.46900 * 109.46986 * 68.01885 * 4 3 2 6 6 C 1.46897 * 110.99879 * 285.21981 * 5 4 3 7 7 C 1.50699 * 109.47259 * 171.94279 * 6 5 4 8 8 H 1.08007 * 119.99961 * 354.43911 * 7 6 5 9 9 C 1.37877 * 120.00336 * 174.44761 * 7 6 5 10 10 N 1.31511 * 119.99797 * 353.58316 * 9 7 6 11 11 Si 1.86806 * 120.00111 * 173.58478 * 9 7 6 12 12 H 1.48497 * 109.47130 * 5.00598 * 11 9 7 13 13 H 1.48498 * 109.47124 * 125.00971 * 11 9 7 14 14 H 1.48500 * 109.46942 * 245.00991 * 11 9 7 15 15 C 1.46905 * 110.99845 * 161.27178 * 5 4 3 16 16 C 1.50697 * 109.46694 * 293.95070 * 15 5 4 17 17 C 1.38232 * 119.99993 * 269.86341 * 16 15 5 18 18 C 1.38241 * 119.99795 * 179.97438 * 17 16 15 19 19 C 1.38230 * 120.00329 * 0.09759 * 18 17 16 20 20 C 1.50699 * 120.00506 * 179.97438 * 19 18 17 21 21 C 1.50702 * 115.54645 * 34.33030 * 20 19 18 22 22 O 1.20826 * 120.00030 * 145.58737 * 21 20 19 23 23 O 1.34230 * 120.00150 * 325.58053 * 21 20 19 24 24 C 1.45189 * 117.00359 * 180.02562 * 23 21 20 25 25 C 1.52994 * 117.50117 * 248.62238 * 20 19 18 26 26 C 1.53002 * 60.00161 * 252.50705 * 25 20 19 27 27 C 1.38240 * 119.99622 * 359.97438 * 19 18 17 28 28 C 1.38236 * 120.00407 * 359.97438 * 27 19 18 29 29 H 1.09001 * 109.46518 * 183.59733 * 1 2 3 30 30 H 1.08999 * 109.46958 * 303.59673 * 1 2 3 31 31 H 1.08999 * 109.47005 * 63.59747 * 1 2 3 32 32 H 1.08996 * 109.47240 * 60.55103 * 3 2 1 33 33 H 1.08994 * 109.47371 * 300.54727 * 3 2 1 34 34 H 1.08996 * 109.47061 * 308.01706 * 4 3 2 35 35 H 1.09002 * 109.46963 * 188.02015 * 4 3 2 36 36 H 1.09002 * 109.47713 * 291.94202 * 6 5 4 37 37 H 1.08999 * 109.47351 * 51.94312 * 6 5 4 38 38 H 0.97006 * 119.99740 * 180.02562 * 10 9 7 39 39 H 1.08999 * 109.46848 * 173.95156 * 15 5 4 40 40 H 1.09003 * 109.47046 * 53.94985 * 15 5 4 41 41 H 1.07995 * 120.00237 * 0.09303 * 17 16 15 42 42 H 1.08007 * 119.99778 * 180.36865 * 18 17 16 43 43 H 1.09003 * 109.47167 * 60.00405 * 24 23 21 44 44 H 1.09005 * 109.47762 * 180.02562 * 24 23 21 45 45 H 1.08998 * 109.47284 * 300.00036 * 24 23 21 46 46 H 1.08999 * 117.49886 * 359.97438 * 25 20 19 47 47 H 1.08997 * 117.50089 * 145.01977 * 25 20 19 48 48 H 1.08993 * 117.49890 * 252.51413 * 26 25 20 49 49 H 1.09000 * 117.49897 * 107.48786 * 26 25 20 50 50 H 1.08005 * 119.99939 * 179.97438 * 27 19 18 51 51 H 1.07995 * 120.00340 * 179.97438 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0138 5 7 3.9713 0.6344 -1.3041 6 6 3.6921 -0.8056 -1.3835 7 6 3.9671 -1.2944 -2.7822 8 1 4.2276 -0.5903 -3.5588 9 6 3.8860 -2.6401 -3.0708 10 7 3.6935 -3.5096 -2.1031 11 14 4.0494 -3.2284 -4.8362 12 1 4.3788 -2.0764 -5.7134 13 1 5.1318 -4.2415 -4.9222 14 1 2.7675 -3.8351 -5.2765 15 6 5.3954 0.9082 -1.5391 16 6 5.6024 2.3927 -1.6943 17 6 5.5245 2.9743 -2.9459 18 6 5.7139 4.3363 -3.0881 19 6 5.9832 5.1163 -1.9791 20 6 6.1903 6.6009 -2.1342 21 6 5.3647 7.2637 -3.2068 22 8 4.9614 8.3915 -3.0482 23 8 5.0776 6.6011 -4.3383 24 6 4.2786 7.3015 -5.3277 25 6 7.5975 7.1477 -1.8863 26 6 6.4850 7.4092 -0.8690 27 6 6.0627 4.5344 -0.7277 28 6 5.8722 3.1726 -0.5852 29 1 -0.3632 -1.0257 0.0645 30 1 -0.3633 0.5687 0.8560 31 1 -0.3633 0.4570 -0.9205 32 1 1.6964 1.8429 0.8948 33 1 1.6808 1.8499 -0.8850 34 1 3.8546 0.5220 0.7905 35 1 3.9791 2.1700 0.1296 36 1 4.3314 -1.3391 -0.6800 37 1 2.6467 -0.9874 -1.1341 38 1 3.6368 -4.4565 -2.3060 39 1 5.7181 0.3993 -2.4474 40 1 5.9794 0.5463 -0.6928 41 1 5.3137 2.3651 -3.8123 42 1 5.6471 4.7916 -4.0652 43 1 4.8001 8.2056 -5.6421 44 1 4.1196 6.6547 -6.1906 45 1 3.3157 7.5700 -4.8932 46 1 8.3735 6.4336 -1.6105 47 1 7.9266 7.9869 -2.4990 48 1 6.0821 8.4203 -0.8126 49 1 6.5291 6.8671 0.0756 50 1 6.2735 5.1437 0.1388 51 1 5.9347 2.7180 0.3924 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364653242.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:49:31 Heat of formation + Delta-G solvation = -61.843802 kcal Electronic energy + Delta-G solvation = -30972.483553 eV Core-core repulsion = 26838.662273 eV Total energy + Delta-G solvation = -4133.821280 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.193 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.11282 -39.41958 -37.96742 -37.37584 -36.42069 -35.52988 -32.55321 -31.20220 -30.80852 -29.32998 -28.39672 -26.88484 -25.93744 -25.06176 -24.06566 -23.07588 -22.35325 -21.84118 -21.47219 -20.05987 -19.69813 -18.06013 -17.04925 -16.64009 -16.51369 -16.09878 -15.77061 -15.52663 -15.15474 -14.93133 -14.70003 -14.41291 -14.28974 -14.04398 -13.87571 -13.52094 -13.38399 -13.05958 -12.89449 -12.60323 -12.50752 -12.27458 -11.90633 -11.82243 -11.70794 -11.42444 -11.24839 -11.08969 -11.04222 -11.00305 -10.84529 -10.74684 -10.71778 -10.67273 -10.50720 -10.36180 -10.18612 -9.76435 -9.22523 -8.84043 -8.65833 -8.34414 -8.22979 -7.15265 -5.92617 -3.91569 1.40516 1.63892 1.90029 2.40770 3.35101 3.40281 3.42719 3.46798 3.96740 4.22727 4.36682 4.37353 4.44419 4.49960 4.66282 4.87614 4.96687 5.00506 5.07948 5.21886 5.27629 5.29721 5.31616 5.42629 5.43830 5.53412 5.55197 5.71444 5.73388 5.76094 5.78215 5.81075 5.83894 5.96287 6.05933 6.08359 6.15123 6.19310 6.24261 6.33673 6.45899 6.63056 6.65552 6.72125 7.04798 7.22703 7.50480 7.52967 7.59564 7.73458 7.90069 8.29784 8.36279 8.67039 9.16848 9.70194 11.17872 Molecular weight = 347.19amu Principal moments of inertia in cm(-1) A = 0.010753 B = 0.002828 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.230441 B = 9898.147451 C =10734.817437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.368 6.368 3 C 0.071 3.929 4 C 0.048 3.952 5 N -0.526 5.526 6 C 0.182 3.818 7 C -0.506 4.506 8 H 0.060 0.940 9 C 0.056 3.944 10 N -0.895 5.895 11 Si 0.890 3.110 12 H -0.273 1.273 13 H -0.287 1.287 14 H -0.285 1.285 15 C 0.093 3.907 16 C -0.054 4.054 17 C -0.096 4.096 18 C -0.106 4.106 19 C -0.072 4.072 20 C -0.096 4.096 21 C 0.506 3.494 22 O -0.509 6.509 23 O -0.343 6.343 24 C 0.031 3.969 25 C -0.137 4.137 26 C -0.141 4.141 27 C -0.115 4.115 28 C -0.121 4.121 29 H 0.080 0.920 30 H 0.029 0.971 31 H 0.036 0.964 32 H 0.037 0.963 33 H 0.052 0.948 34 H 0.032 0.968 35 H 0.077 0.923 36 H -0.009 1.009 37 H 0.067 0.933 38 H 0.258 0.742 39 H 0.096 0.904 40 H 0.029 0.971 41 H 0.127 0.873 42 H 0.138 0.862 43 H 0.062 0.938 44 H 0.104 0.896 45 H 0.063 0.937 46 H 0.113 0.887 47 H 0.103 0.897 48 H 0.112 0.888 49 H 0.114 0.886 50 H 0.119 0.881 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.814 20.960 1.543 21.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.286 6.286 3 C -0.006 4.006 4 C -0.081 4.081 5 N -0.250 5.250 6 C 0.058 3.942 7 C -0.544 4.544 8 H 0.079 0.921 9 C -0.145 4.145 10 N -0.535 5.535 11 Si 0.719 3.281 12 H -0.198 1.198 13 H -0.214 1.214 14 H -0.211 1.211 15 C -0.034 4.034 16 C -0.054 4.054 17 C -0.115 4.115 18 C -0.124 4.124 19 C -0.072 4.072 20 C -0.097 4.097 21 C 0.349 3.651 22 O -0.397 6.397 23 O -0.259 6.259 24 C -0.063 4.063 25 C -0.174 4.174 26 C -0.177 4.177 27 C -0.133 4.133 28 C -0.140 4.140 29 H 0.099 0.901 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.095 0.905 36 H 0.009 0.991 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.114 0.886 40 H 0.047 0.953 41 H 0.145 0.855 42 H 0.155 0.845 43 H 0.080 0.920 44 H 0.122 0.878 45 H 0.082 0.918 46 H 0.132 0.868 47 H 0.121 0.879 48 H 0.130 0.870 49 H 0.132 0.868 50 H 0.136 0.864 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.481 21.150 1.212 21.469 hybrid contribution 0.039 -0.524 -0.444 0.688 sum 3.520 20.625 0.768 20.938 Atomic orbital electron populations 1.22649 0.82711 1.02161 0.98926 1.88159 1.18333 1.27215 1.94912 1.22496 0.94182 0.85050 0.98865 1.22199 0.93487 0.99742 0.92678 1.62230 1.14641 1.19945 1.28220 1.20120 0.98681 0.79104 0.96327 1.21236 1.46193 0.91778 0.95234 0.92134 1.24946 0.95832 0.96812 0.96886 1.69997 1.50591 1.01736 1.31158 0.86568 0.77519 0.78608 0.85434 1.19761 1.21371 1.21080 1.21042 0.90617 0.89543 1.02235 1.20229 0.95532 0.96741 0.92933 1.21119 0.98491 0.94217 0.97649 1.21360 0.98730 0.93649 0.98644 1.18548 1.04157 0.90232 0.94253 1.19629 1.00063 0.93138 0.96864 1.22349 0.77325 0.83820 0.81600 1.90650 1.50488 1.19369 1.79195 1.86581 1.65904 1.46005 1.27451 1.23341 0.94770 0.97922 0.90258 1.23205 0.89790 1.02613 1.01836 1.23259 1.00647 1.01231 0.92586 1.20834 1.01533 0.94926 0.96027 1.21015 1.01163 0.93306 0.98469 0.90108 0.95225 0.94496 0.94475 0.92959 0.94932 0.90461 0.99103 0.91580 0.93212 0.88554 0.95317 0.85480 0.84474 0.91972 0.87765 0.91781 0.86827 0.87880 0.87016 0.86773 0.86352 0.86268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.62 16 2 O -0.37 -7.34 7.78 -35.23 -0.27 -7.61 16 3 C 0.07 1.24 6.23 37.16 0.23 1.47 16 4 C 0.05 0.87 5.38 -3.82 -0.02 0.85 16 5 N -0.53 -11.22 4.44 -237.52 -1.05 -12.28 16 6 C 0.18 4.77 4.51 -4.98 -0.02 4.74 16 7 C -0.51 -14.14 8.22 -34.44 -0.28 -14.42 16 8 H 0.06 1.67 7.28 -52.48 -0.38 1.29 16 9 C 0.06 1.60 5.45 -17.82 -0.10 1.50 16 10 N -0.90 -26.84 13.28 55.43 0.74 -26.11 16 11 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 15 C 0.09 1.79 4.97 -4.97 -0.02 1.76 16 16 C -0.05 -0.86 4.95 -104.63 -0.52 -1.38 16 17 C -0.10 -1.48 9.70 -39.58 -0.38 -1.86 16 18 C -0.11 -1.44 9.09 -39.58 -0.36 -1.80 16 19 C -0.07 -0.89 5.44 -104.62 -0.57 -1.45 16 20 C -0.10 -1.03 2.50 -156.81 -0.39 -1.43 16 21 C 0.51 6.19 7.46 36.01 0.27 6.46 16 22 O -0.51 -7.09 16.01 -18.75 -0.30 -7.39 16 23 O -0.34 -3.90 7.24 -39.26 -0.28 -4.18 16 24 C 0.03 0.26 10.56 101.05 1.07 1.32 16 25 C -0.14 -1.12 9.94 -26.73 -0.27 -1.39 16 26 C -0.14 -1.20 9.38 -26.73 -0.25 -1.45 16 27 C -0.12 -1.38 9.39 -39.58 -0.37 -1.75 16 28 C -0.12 -1.65 7.86 -39.58 -0.31 -1.96 16 29 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.03 0.62 8.01 -51.93 -0.42 0.21 16 35 H 0.08 1.23 4.99 -51.93 -0.26 0.97 16 36 H -0.01 -0.26 8.10 -51.93 -0.42 -0.68 16 37 H 0.07 1.86 5.12 -51.93 -0.27 1.59 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.10 2.03 6.56 -51.93 -0.34 1.69 16 40 H 0.03 0.55 8.07 -51.93 -0.42 0.13 16 41 H 0.13 1.99 8.06 -52.49 -0.42 1.57 16 42 H 0.14 1.74 5.28 -52.48 -0.28 1.46 16 43 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 44 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 46 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.11 0.97 7.67 -51.93 -0.40 0.57 16 49 H 0.11 0.80 6.08 -51.93 -0.32 0.49 16 50 H 0.12 1.11 5.93 -52.48 -0.31 0.80 16 51 H 0.12 1.49 7.65 -52.49 -0.40 1.09 16 LS Contribution 410.13 15.07 6.18 6.18 Total: -1.00 -33.05 410.13 -9.20 -42.25 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -7.99 Total: 1.63 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -1.19 Total: -9.15 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: -0.32 Total: -38.39 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.86 Total: -19.18 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.05 -9.20 -42.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364653242.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.592 kcal (2) G-P(sol) polarization free energy of solvation -33.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds