Wall clock time and date at job start Wed Apr 1 2020 04:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46751 * 2 1 4 4 C 1.53000 * 109.47287 * 119.99955 * 2 1 3 5 5 C 1.53001 * 109.47229 * 175.00001 * 4 2 1 6 6 N 1.46497 * 109.47208 * 180.02562 * 5 4 2 7 7 C 1.46509 * 119.99896 * 275.00346 * 6 5 4 8 8 C 1.50696 * 109.47086 * 274.99906 * 7 6 5 9 9 H 1.08005 * 119.99768 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00266 * 180.02562 * 8 7 6 11 11 N 1.31512 * 119.99999 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 119.99914 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.47247 * 89.99446 * 12 10 8 14 14 H 1.48499 * 109.47007 * 210.00066 * 12 10 8 15 15 H 1.48502 * 109.46587 * 329.99899 * 12 10 8 16 16 S 1.65597 * 120.00200 * 95.00038 * 6 5 4 17 17 O 1.42099 * 104.27524 * 333.93078 * 16 6 5 18 18 O 1.42095 * 104.28053 * 206.07354 * 16 6 5 19 19 C 1.81401 * 104.44822 * 90.00207 * 16 6 5 20 20 C 1.53003 * 109.46961 * 180.02562 * 19 16 6 21 21 H 1.09002 * 109.54370 * 304.99704 * 20 19 16 22 22 C 1.53174 * 109.61696 * 65.22053 * 20 19 16 23 23 C 1.53095 * 109.16381 * 176.89131 * 22 20 19 24 24 O 1.42910 * 109.41337 * 302.39093 * 23 22 20 25 25 C 1.42902 * 114.09650 * 61.15575 * 24 23 22 26 26 H 1.09005 * 109.47939 * 58.82140 * 25 24 23 27 27 C 1.52999 * 109.47976 * 178.85611 * 25 24 23 28 28 C 1.53093 * 109.41910 * 298.84413 * 25 24 23 29 29 H 1.08991 * 109.47188 * 299.99625 * 1 2 3 30 30 H 1.08993 * 109.47157 * 60.00382 * 1 2 3 31 31 H 1.08999 * 109.46834 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47430 * 239.99939 * 2 1 3 33 33 H 1.09009 * 109.47090 * 179.97438 * 3 2 1 34 34 H 1.08993 * 109.47471 * 299.99921 * 3 2 1 35 35 H 1.08999 * 109.47319 * 60.00307 * 3 2 1 36 36 H 1.09003 * 109.46930 * 55.00172 * 4 2 1 37 37 H 1.08998 * 109.47454 * 295.00595 * 4 2 1 38 38 H 1.09003 * 109.47024 * 60.00229 * 5 4 2 39 39 H 1.08993 * 109.47373 * 300.00168 * 5 4 2 40 40 H 1.08997 * 109.47104 * 34.99626 * 7 6 5 41 41 H 1.09000 * 109.46919 * 154.99818 * 7 6 5 42 42 H 0.97005 * 119.99939 * 179.97438 * 11 10 8 43 43 H 1.08997 * 109.47108 * 60.00294 * 19 16 6 44 44 H 1.09002 * 109.46784 * 299.99908 * 19 16 6 45 45 H 1.09004 * 109.52433 * 296.79634 * 22 20 19 46 46 H 1.08999 * 109.52728 * 56.98569 * 22 20 19 47 47 H 1.08998 * 109.48473 * 182.41141 * 23 22 20 48 48 H 1.08998 * 109.49081 * 62.38034 * 23 22 20 49 49 H 1.09008 * 109.47023 * 179.97438 * 27 25 24 50 50 H 1.09000 * 109.47528 * 299.94599 * 27 25 24 51 51 H 1.09005 * 109.47114 * 59.94924 * 27 25 24 52 52 H 1.09003 * 109.51855 * 297.70418 * 28 25 24 53 53 H 1.08994 * 109.58000 * 177.54525 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.8310 1.1879 6 7 4.0532 -1.5221 2.3838 7 6 4.2973 -0.7692 3.6166 8 6 5.6797 -0.1707 3.5744 9 1 6.3132 -0.3351 2.7153 10 6 6.1361 0.5859 4.6328 11 7 7.3427 1.1077 4.5961 12 14 5.0411 0.8685 6.1196 13 1 5.2691 -0.2101 7.1145 14 1 5.3655 2.1825 6.7307 15 1 3.6180 0.8577 5.6953 16 16 4.3292 -3.1544 2.3421 17 8 3.4600 -3.6309 1.3240 18 8 4.1740 -3.5707 3.6918 19 6 6.0609 -3.3075 1.8238 20 6 6.4410 -4.7876 1.7462 21 1 6.2297 -5.2689 2.7011 22 6 5.6315 -5.4690 0.6387 23 6 6.0751 -6.9293 0.5179 24 8 7.4781 -6.9790 0.2507 25 6 8.2881 -6.3987 1.2751 26 1 8.1059 -6.9141 2.2181 27 6 9.7642 -6.5339 0.8962 28 6 7.9334 -4.9171 1.4263 29 1 -0.3633 0.5137 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9564 0.8900 36 1 1.6055 -1.7198 1.2951 37 1 1.7517 -0.1584 2.1370 38 1 3.9995 0.1676 1.1421 39 1 3.8533 -1.3939 0.3003 40 1 3.5591 0.0276 3.7079 41 1 4.2172 -1.4386 4.4731 42 1 7.6636 1.6403 5.3406 43 1 6.7025 -2.8047 2.5474 44 1 6.1887 -2.8480 0.8437 45 1 4.5707 -5.4299 0.8861 46 1 5.8049 -4.9563 -0.3074 47 1 5.5327 -7.4078 -0.2975 48 1 5.8640 -7.4518 1.4509 49 1 10.3819 -6.0908 1.6775 50 1 10.0167 -7.5888 0.7886 51 1 9.9459 -6.0188 -0.0471 52 1 8.1533 -4.3932 0.4961 53 1 8.5187 -4.4823 2.2365 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364769917.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:56 Heat of formation + Delta-G solvation = -170.034148 kcal Electronic energy + Delta-G solvation = -30826.715654 eV Core-core repulsion = 26823.646841 eV Total energy + Delta-G solvation = -4003.068814 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.196 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.61018 -38.62707 -38.17797 -37.02344 -36.34883 -36.07082 -34.47336 -33.73657 -30.89713 -30.09873 -28.59582 -28.01559 -27.92503 -24.70977 -24.54953 -23.39030 -22.68163 -21.28939 -20.80958 -19.75424 -19.00451 -18.60264 -17.56164 -17.46774 -17.14792 -16.87520 -16.32269 -16.19177 -15.87656 -15.62894 -15.41074 -15.06729 -14.89485 -14.65759 -14.43343 -14.22408 -13.95068 -13.72871 -13.56844 -13.41067 -13.31872 -13.22145 -13.11692 -13.07265 -13.03843 -12.97764 -12.75404 -12.60164 -12.39300 -12.33985 -12.17470 -12.12185 -12.01915 -11.96483 -11.78042 -11.58438 -11.48841 -11.41313 -11.32589 -11.14950 -10.78559 -10.48252 -9.67217 -8.31116 -6.35320 -0.66195 1.35101 1.38819 1.46109 1.72233 2.33236 2.76566 2.84423 3.04032 3.16419 3.35899 3.53096 3.64394 3.83801 3.91455 3.96235 4.09234 4.11483 4.17058 4.18513 4.21618 4.35246 4.46303 4.52624 4.57454 4.61223 4.67311 4.74126 4.74652 4.80520 4.82182 4.84325 4.87374 4.95288 4.99648 5.00409 5.02067 5.06726 5.08079 5.17124 5.20018 5.23392 5.30693 5.35792 5.37940 5.46352 5.54541 5.60460 5.79341 6.25317 6.28382 6.69214 7.29980 8.83624 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008505 B = 0.004211 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3291.479366 B = 6647.374281 C = 8895.330489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 C -0.150 4.150 4 C -0.132 4.132 5 C 0.123 3.877 6 N -0.987 5.987 7 C 0.221 3.779 8 C -0.540 4.540 9 H 0.059 0.941 10 C 0.026 3.974 11 N -0.935 5.935 12 Si 0.918 3.082 13 H -0.271 1.271 14 H -0.279 1.279 15 H -0.246 1.246 16 S 2.609 3.391 17 O -0.970 6.970 18 O -0.997 6.997 19 C -0.608 4.608 20 C -0.083 4.083 21 H 0.080 0.920 22 C -0.180 4.180 23 C 0.062 3.938 24 O -0.392 6.392 25 C 0.079 3.921 26 H 0.065 0.935 27 C -0.142 4.142 28 C -0.135 4.135 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.048 0.952 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.043 0.957 41 H 0.035 0.965 42 H 0.268 0.732 43 H 0.133 0.867 44 H 0.146 0.854 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.117 0.883 48 H 0.060 0.940 49 H 0.083 0.917 50 H 0.069 0.931 51 H 0.062 0.938 52 H 0.077 0.923 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.323 -10.087 -10.360 15.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C -0.207 4.207 4 C -0.172 4.172 5 C -0.002 4.002 6 N -0.823 5.823 7 C 0.096 3.904 8 C -0.580 4.580 9 H 0.077 0.923 10 C -0.173 4.173 11 N -0.574 5.574 12 Si 0.742 3.258 13 H -0.196 1.196 14 H -0.204 1.204 15 H -0.169 1.169 16 S 2.706 3.294 17 O -0.960 6.960 18 O -0.988 6.988 19 C -0.739 4.739 20 C -0.104 4.104 21 H 0.098 0.902 22 C -0.218 4.218 23 C -0.015 4.015 24 O -0.311 6.311 25 C 0.021 3.979 26 H 0.083 0.917 27 C -0.199 4.199 28 C -0.174 4.174 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.077 0.923 43 H 0.151 0.849 44 H 0.164 0.836 45 H 0.100 0.900 46 H 0.105 0.895 47 H 0.135 0.865 48 H 0.078 0.922 49 H 0.102 0.898 50 H 0.088 0.912 51 H 0.081 0.919 52 H 0.096 0.904 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.791 -10.691 -10.204 15.536 hybrid contribution 0.414 1.098 1.188 1.670 sum -4.377 -9.594 -9.016 13.874 Atomic orbital electron populations 1.21812 0.94357 1.01805 1.02139 1.21057 0.96470 0.96283 0.97231 1.21910 1.01150 0.95684 1.01960 1.22078 0.95341 1.00775 0.98978 1.21418 0.94402 0.98920 0.85454 1.57130 1.79804 1.26235 1.19157 1.19316 0.95861 0.92543 0.82706 1.21687 0.99697 1.32086 1.04489 0.92319 1.25571 0.95943 0.94946 1.00865 1.69998 1.18689 1.35478 1.33277 0.86142 0.81112 0.78091 0.80452 1.19624 1.20422 1.16926 1.04783 0.78228 0.72836 0.73555 1.93511 1.62959 1.79413 1.60116 1.93497 1.86794 1.81544 1.36967 1.30578 1.24589 1.04973 1.13806 1.21036 0.98609 0.90599 1.00114 0.90163 1.22714 1.00582 0.98662 0.99848 1.22664 0.81542 0.94296 1.02972 1.87902 1.17148 1.80266 1.45788 1.22275 0.92537 0.91751 0.91289 0.91715 1.21774 0.92060 1.03232 1.02846 1.22251 0.93655 0.97984 1.03494 0.93031 0.91295 0.92812 0.90315 0.92865 0.91344 0.93284 0.92267 0.92547 0.90122 0.89601 0.93868 0.94692 0.92333 0.84887 0.83576 0.89968 0.89456 0.86517 0.92174 0.89819 0.91156 0.91939 0.90398 0.90022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.19 71.98 0.66 -2.24 16 2 C -0.09 -2.12 2.92 -10.79 -0.03 -2.15 16 3 C -0.15 -3.38 8.95 71.98 0.64 -2.73 16 4 C -0.13 -3.91 5.01 30.59 0.15 -3.76 16 5 C 0.12 4.00 5.01 86.38 0.43 4.43 16 6 N -0.99 -38.21 2.70 -519.85 -1.40 -39.61 16 7 C 0.22 10.06 4.48 85.63 0.38 10.44 16 8 C -0.54 -28.20 9.94 25.60 0.25 -27.94 16 9 H 0.06 3.23 8.06 -2.91 -0.02 3.21 16 10 C 0.03 1.44 5.47 84.65 0.46 1.90 16 11 N -0.93 -54.48 13.96 21.45 0.30 -54.18 16 12 Si 0.92 41.99 27.47 68.60 1.88 43.87 16 13 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 14 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 15 H -0.25 -10.48 6.54 99.48 0.65 -9.83 16 16 S 2.61 95.47 5.03 -56.49 -0.28 95.19 16 17 O -0.97 -34.54 14.58 -127.65 -1.86 -36.40 16 18 O -1.00 -43.67 16.53 -127.65 -2.11 -45.78 16 19 C -0.61 -18.78 5.63 71.98 0.41 -18.38 16 20 C -0.08 -2.25 2.27 -10.67 -0.02 -2.27 16 21 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 22 C -0.18 -4.41 5.02 30.68 0.15 -4.26 16 23 C 0.06 1.29 6.84 72.01 0.49 1.79 16 24 O -0.39 -9.14 10.41 -148.98 -1.55 -10.69 16 25 C 0.08 1.68 3.26 30.62 0.10 1.78 16 26 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 27 C -0.14 -2.46 9.56 71.98 0.69 -1.77 16 28 C -0.14 -3.21 4.71 30.69 0.14 -3.06 16 29 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.05 1.28 6.56 -2.38 -0.02 1.27 16 34 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.06 1.84 7.90 -2.39 -0.02 1.82 16 37 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.08 2.69 6.53 -2.39 -0.02 2.67 16 39 H 0.09 2.41 7.60 -2.39 -0.02 2.40 16 40 H 0.04 1.92 7.17 -2.39 -0.02 1.90 16 41 H 0.04 1.68 6.24 -2.39 -0.01 1.66 16 42 H 0.27 14.71 8.31 -92.70 -0.77 13.94 16 43 H 0.13 4.58 8.14 -2.39 -0.02 4.56 16 44 H 0.15 3.91 8.14 -2.39 -0.02 3.89 16 45 H 0.08 2.15 5.85 -2.39 -0.01 2.14 16 46 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 48 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 50 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 51 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 52 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 53 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -65.59 418.61 0.68 -64.90 By element: Atomic # 1 Polarization: 30.14 SS G_CDS: 0.79 Total: 30.92 kcal Atomic # 6 Polarization: -53.15 SS G_CDS: 4.92 Total: -48.22 kcal Atomic # 7 Polarization: -92.69 SS G_CDS: -1.10 Total: -93.79 kcal Atomic # 8 Polarization: -87.35 SS G_CDS: -5.52 Total: -92.88 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 1.88 Total: 43.87 kcal Atomic # 16 Polarization: 95.47 SS G_CDS: -0.28 Total: 95.19 kcal Total: -65.59 0.68 -64.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364769917.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.132 kcal (2) G-P(sol) polarization free energy of solvation -65.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds