Wall clock time and date at job start Wed Apr 1 2020 05:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46899 * 111.00054 * 2 1 4 4 C 1.46901 * 110.99672 * 123.95677 * 2 1 3 5 5 C 1.53002 * 109.47333 * 66.04585 * 4 2 1 6 6 N 1.46501 * 109.47058 * 180.02562 * 5 4 2 7 7 N 1.40066 * 126.04122 * 270.00131 * 6 5 4 8 8 C 1.30854 * 108.37129 * 180.02562 * 7 6 5 9 9 C 1.39766 * 108.31913 * 359.73657 * 8 7 6 10 10 C 1.35243 * 126.04481 * 89.99998 * 6 5 4 11 11 N 1.39489 * 126.21748 * 0.02562 * 10 6 5 12 12 C 1.34777 * 120.00209 * 179.97438 * 11 10 6 13 13 O 1.21593 * 119.99923 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00128 * 180.02562 * 12 11 10 15 15 C 1.40186 * 119.99745 * 180.27816 * 14 12 11 16 16 C 1.40400 * 125.97490 * 359.43676 * 15 14 12 17 17 C 1.35239 * 107.86807 * 179.82641 * 16 15 14 18 18 N 1.34968 * 107.85970 * 0.43344 * 17 16 15 19 19 C 1.46494 * 125.98042 * 179.72489 * 18 17 16 20 20 C 1.50700 * 109.47219 * 124.97322 * 19 18 17 21 21 H 1.07995 * 120.00401 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99853 * 180.02562 * 20 19 18 23 23 N 1.31509 * 120.00284 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99695 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47569 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47027 * 120.00242 * 24 22 20 27 27 H 1.48500 * 109.46907 * 239.99918 * 24 22 20 28 28 N 1.31208 * 125.96918 * 179.74638 * 15 14 12 29 29 H 1.08997 * 109.47624 * 296.04586 * 1 2 3 30 30 H 1.09007 * 109.47045 * 56.04856 * 1 2 3 31 31 H 1.09001 * 109.47594 * 176.04155 * 1 2 3 32 32 H 1.08996 * 109.47276 * 183.94802 * 3 2 1 33 33 H 1.08990 * 109.47412 * 303.95503 * 3 2 1 34 34 H 1.09009 * 109.46728 * 63.95631 * 3 2 1 35 35 H 1.09002 * 109.47076 * 306.04752 * 4 2 1 36 36 H 1.08995 * 109.46918 * 186.04730 * 4 2 1 37 37 H 1.09002 * 109.46903 * 60.00062 * 5 4 2 38 38 H 1.09000 * 109.46964 * 300.00331 * 5 4 2 39 39 H 1.08001 * 125.83965 * 180.02562 * 8 7 6 40 40 H 1.07992 * 126.08621 * 180.28382 * 9 8 7 41 41 H 0.97000 * 120.00241 * 0.02562 * 11 10 6 42 42 H 0.97001 * 119.99727 * 359.97438 * 14 12 11 43 43 H 1.08006 * 126.06415 * 359.97438 * 16 15 14 44 44 H 1.08007 * 126.07479 * 180.15698 * 17 16 15 45 45 H 1.09000 * 109.47514 * 244.97784 * 19 18 17 46 46 H 1.09012 * 109.47100 * 4.97296 * 19 18 17 47 47 H 0.97000 * 120.00322 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7661 1.1376 5 6 1.6313 -2.2427 0.9703 6 7 2.1558 -3.0065 2.1051 7 7 3.4173 -3.6105 2.1794 8 6 3.5245 -4.1999 3.3428 9 6 2.3396 -3.9882 4.0533 10 6 1.5074 -3.2531 3.2661 11 7 0.2213 -2.8274 3.5984 12 6 -0.3057 -3.1468 4.7970 13 8 0.3402 -3.8056 5.5890 14 7 -1.5485 -2.7359 5.1178 15 6 -2.0943 -3.0632 6.3669 16 6 -1.4652 -3.8182 7.3696 17 6 -2.3157 -3.9070 8.4174 18 7 -3.4450 -3.2436 8.0912 19 6 -4.6309 -3.0949 8.9383 20 6 -4.9568 -1.6318 9.0939 21 1 -4.3423 -0.8872 8.6099 22 6 -6.0396 -1.2438 9.8543 23 7 -6.7876 -2.1504 10.4441 24 14 -6.4431 0.5698 10.0477 25 1 -5.4548 1.3803 9.2917 26 1 -7.8063 0.8326 9.5206 27 1 -6.3887 0.9384 11.4852 28 7 -3.2846 -2.7222 6.8010 29 1 -0.3634 0.4512 0.9232 30 1 -0.3633 0.5740 -0.8525 31 1 -0.3634 -1.0252 -0.0709 32 1 3.0827 1.3432 -0.0708 33 1 1.5898 1.9163 -0.8523 34 1 1.7044 1.8723 0.9234 35 1 1.5609 -0.3874 2.0628 36 1 3.0796 -0.6612 1.1756 37 1 2.0657 -2.6214 0.0451 38 1 0.5471 -2.3475 0.9322 39 1 4.3835 -4.7513 3.6956 40 1 2.1223 -4.3461 5.0488 41 1 -0.2941 -2.3021 2.9665 42 1 -2.0636 -2.2100 4.4862 43 1 -0.4765 -4.2494 7.3149 44 1 -2.1268 -4.4215 9.3480 45 1 -5.4743 -3.6078 8.4761 46 1 -4.4342 -3.5296 9.9184 47 1 -7.5491 -1.8774 10.9793 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365060171.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:12 Heat of formation + Delta-G solvation = 162.604369 kcal Electronic energy + Delta-G solvation = -29528.874412 eV Core-core repulsion = 25365.831095 eV Total energy + Delta-G solvation = -4163.043318 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 347.181 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.80181 -40.75063 -39.62991 -38.19054 -35.32943 -34.95735 -33.69458 -33.39614 -31.06884 -29.48966 -29.27009 -28.82413 -28.14382 -26.70462 -24.99092 -23.71769 -22.58045 -21.99673 -21.54252 -20.80089 -20.05138 -19.92424 -18.50546 -17.69506 -16.64203 -16.60164 -16.34262 -16.13255 -15.84621 -15.60804 -15.25725 -14.99834 -14.73733 -14.57413 -14.25564 -13.96712 -13.90709 -13.72219 -13.12617 -12.96197 -12.84865 -12.51325 -12.43180 -12.32503 -12.24413 -12.17510 -11.90152 -11.60932 -11.34287 -11.07258 -10.95555 -10.82881 -10.54863 -10.31343 -10.14337 -9.78518 -9.55312 -9.25087 -8.98535 -8.68415 -8.33876 -8.15983 -7.53278 -6.28810 -4.33939 1.55838 1.61674 2.38537 2.49682 2.79210 3.03224 3.18646 3.26363 3.29354 3.34829 3.48784 3.68424 4.02932 4.07511 4.28705 4.31531 4.57932 4.70424 4.75502 4.84829 4.95558 5.02772 5.06517 5.07896 5.25597 5.30692 5.33621 5.37629 5.38991 5.47104 5.67178 5.75736 5.99164 6.06971 6.31943 6.35978 6.41239 6.43502 6.61815 6.69566 6.83561 6.93288 7.01843 7.31516 7.51402 7.63430 7.68738 7.84562 7.97953 8.24387 8.54697 8.75291 9.31911 10.79985 Molecular weight = 347.18amu Principal moments of inertia in cm(-1) A = 0.012083 B = 0.002188 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.779890 B =12795.933838 C =14689.588641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.543 5.543 3 C 0.025 3.975 4 C 0.037 3.963 5 C 0.136 3.864 6 N -0.389 5.389 7 N -0.293 5.293 8 C 0.062 3.938 9 C -0.277 4.277 10 C 0.328 3.672 11 N -0.660 5.660 12 C 0.722 3.278 13 O -0.532 6.532 14 N -0.634 5.634 15 C 0.272 3.728 16 C -0.285 4.285 17 C 0.054 3.946 18 N -0.317 5.317 19 C 0.257 3.743 20 C -0.528 4.528 21 H 0.069 0.931 22 C 0.062 3.938 23 N -0.894 5.894 24 Si 0.907 3.093 25 H -0.272 1.272 26 H -0.281 1.281 27 H -0.281 1.281 28 N -0.303 5.303 29 H 0.031 0.969 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.029 0.971 35 H 0.040 0.960 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.085 0.915 39 H 0.187 0.813 40 H 0.177 0.823 41 H 0.404 0.596 42 H 0.408 0.592 43 H 0.162 0.838 44 H 0.169 0.831 45 H 0.046 0.954 46 H 0.058 0.942 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.608 0.935 -19.362 25.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.267 5.267 3 C -0.124 4.124 4 C -0.092 4.092 5 C 0.014 3.986 6 N -0.177 5.177 7 N -0.115 5.115 8 C -0.124 4.124 9 C -0.309 4.309 10 C 0.108 3.892 11 N -0.310 5.310 12 C 0.421 3.579 13 O -0.404 6.404 14 N -0.284 5.284 15 C 0.018 3.982 16 C -0.316 4.316 17 C -0.096 4.096 18 N -0.099 5.099 19 C 0.140 3.860 20 C -0.567 4.567 21 H 0.087 0.913 22 C -0.141 4.141 23 N -0.533 5.533 24 Si 0.735 3.265 25 H -0.196 1.196 26 H -0.207 1.207 27 H -0.207 1.207 28 N -0.134 5.134 29 H 0.049 0.951 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.047 0.953 35 H 0.058 0.942 36 H 0.106 0.894 37 H 0.127 0.873 38 H 0.103 0.897 39 H 0.203 0.797 40 H 0.194 0.806 41 H 0.239 0.761 42 H 0.243 0.757 43 H 0.180 0.820 44 H 0.187 0.813 45 H 0.063 0.937 46 H 0.076 0.924 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 16.448 1.040 -20.302 26.149 hybrid contribution -0.993 1.453 1.159 2.108 sum 15.455 2.493 -19.142 24.729 Atomic orbital electron populations 1.22556 0.87078 1.02536 1.01340 1.61914 1.08228 1.14489 1.42113 1.22400 1.01029 0.87985 1.00939 1.22534 1.01936 0.92678 0.92073 1.21567 0.98676 0.90135 0.88245 1.48526 1.12368 1.44766 1.12089 1.77486 0.96084 1.16571 1.21332 1.23809 0.98893 0.98292 0.91418 1.21718 0.94071 1.10827 1.04286 1.17593 0.84696 0.98496 0.88444 1.41721 1.14041 1.57300 1.17979 1.15170 0.81175 0.80500 0.81065 1.90837 1.59678 1.41519 1.48368 1.41154 1.14564 1.56505 1.16156 1.18684 0.93340 1.00124 0.86050 1.21505 1.04012 1.12455 0.93642 1.22579 0.87756 0.98990 1.00296 1.49093 1.14108 1.36708 1.10024 1.19775 0.79299 0.99258 0.87656 1.21283 1.13025 0.90946 1.31434 0.91272 1.24947 0.95498 0.98649 0.95004 1.69920 1.17641 1.33363 1.32341 0.86278 0.78349 0.83979 0.77929 1.19607 1.20693 1.20728 1.77329 1.15584 1.23786 0.96725 0.95071 0.90701 0.91123 0.91048 0.90853 0.95285 0.94195 0.89386 0.87313 0.89706 0.79656 0.80577 0.76069 0.75660 0.82016 0.81330 0.93656 0.92407 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.32 60.06 0.56 0.63 16 2 N -0.54 -3.46 5.02 -251.26 -1.26 -4.72 16 3 C 0.02 0.14 9.57 60.06 0.57 0.71 16 4 C 0.04 0.26 5.28 -3.82 -0.02 0.24 16 5 C 0.14 0.98 6.18 -4.04 -0.02 0.95 16 6 N -0.39 -4.00 3.62 -60.39 -0.22 -4.22 16 7 N -0.29 -3.43 12.56 30.61 0.38 -3.04 16 8 C 0.06 0.67 12.01 -17.40 -0.21 0.46 16 9 C -0.28 -3.47 9.65 -39.77 -0.38 -3.86 16 10 C 0.33 3.77 7.66 -153.16 -1.17 2.60 16 11 N -0.66 -6.67 5.42 -15.85 -0.09 -6.76 16 12 C 0.72 9.80 8.50 -86.92 -0.74 9.06 16 13 O -0.53 -8.68 10.59 5.28 0.06 -8.62 16 14 N -0.63 -8.92 5.45 -15.51 -0.08 -9.01 16 15 C 0.27 5.12 8.11 -154.37 -1.25 3.86 16 16 C -0.28 -5.33 9.60 -39.84 -0.38 -5.71 16 17 C 0.05 1.02 11.44 -17.24 -0.20 0.83 16 18 N -0.32 -7.09 3.67 -62.56 -0.23 -7.32 16 19 C 0.26 6.35 6.26 -5.20 -0.03 6.32 16 20 C -0.53 -14.35 9.24 -34.44 -0.32 -14.67 16 21 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 22 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 23 N -0.89 -24.87 13.29 55.43 0.74 -24.13 16 24 Si 0.91 20.95 29.54 -169.99 -5.02 15.93 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 28 N -0.30 -6.64 12.42 31.44 0.39 -6.25 16 29 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 31 H 0.07 0.28 6.47 -51.93 -0.34 -0.05 16 32 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 33 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 34 H 0.03 0.17 8.14 -51.92 -0.42 -0.25 16 35 H 0.04 0.31 8.12 -51.93 -0.42 -0.11 16 36 H 0.09 0.72 8.06 -51.93 -0.42 0.30 16 37 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.45 5.91 -51.93 -0.31 0.14 16 39 H 0.19 1.38 8.06 -52.49 -0.42 0.96 16 40 H 0.18 2.45 5.82 -52.49 -0.31 2.15 16 41 H 0.40 2.70 7.98 -40.82 -0.33 2.37 16 42 H 0.41 4.44 8.84 -40.82 -0.36 4.08 16 43 H 0.16 2.92 5.91 -52.48 -0.31 2.61 16 44 H 0.17 2.60 8.06 -52.48 -0.42 2.18 16 45 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.06 1.40 8.07 -51.92 -0.42 0.98 16 47 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 395.53 15.07 5.96 5.96 Total: -1.00 -33.24 395.53 -9.62 -42.85 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -6.55 Total: 6.33 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -3.69 Total: 3.00 kcal Atomic # 7 Polarization: -65.08 SS G_CDS: -0.37 Total: -65.45 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.06 Total: -8.62 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.24 -9.62 -42.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365060171.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.458 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 172.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds